Protein–RNA interactions for Protein: Q05722

Col9a1, Collagen alpha-1(IX) chain, mousemouse

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col9a1Q05722 Gapdh-ps15-201ENSMUST00000180966 1002 ntBASIC15.31■□□□□ 0.04
Col9a1Q05722 Gm2574-201ENSMUST00000181051 1002 ntBASIC15.31■□□□□ 0.04
Col9a1Q05722 Gm3200-201ENSMUST00000181493 1002 ntBASIC15.31■□□□□ 0.04
Col9a1Q05722 Gm4518-201ENSMUST00000182638 718 ntBASIC15.31■□□□□ 0.04
Col9a1Q05722 Gm8330-201ENSMUST00000182754 1008 ntBASIC15.31■□□□□ 0.04
Col9a1Q05722 Gm4575-201ENSMUST00000182991 1002 ntBASIC15.31■□□□□ 0.04
Col9a1Q05722 Gm8709-201ENSMUST00000183230 1012 ntBASIC15.31■□□□□ 0.04
Col9a1Q05722 Gm37436-201ENSMUST00000193842 1085 ntBASIC15.31■□□□□ 0.04
Col9a1Q05722 Hddc3-206ENSMUST00000206074 565 ntTSL 2 BASIC15.31■□□□□ 0.04
Col9a1Q05722 2310016G11Rik-202ENSMUST00000209111 733 ntTSL 3 BASIC15.31■□□□□ 0.04
Col9a1Q05722 Pomc-201ENSMUST00000020990 1031 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Col9a1Q05722 CT025555.1-201ENSMUST00000225901 1217 ntBASIC15.31■□□□□ 0.04
Col9a1Q05722 Taf11-201ENSMUST00000025057 1220 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Col9a1Q05722 4933434E20Rik-202ENSMUST00000029552 1080 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Col9a1Q05722 Sit1-201ENSMUST00000030180 1228 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Col9a1Q05722 Gchfr-201ENSMUST00000057454 645 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Col9a1Q05722 Gm10293-201ENSMUST00000076317 1002 ntBASIC15.31■□□□□ 0.04
Col9a1Q05722 Gm6316-201ENSMUST00000082064 1020 ntBASIC15.31■□□□□ 0.04
Col9a1Q05722 Ppt1-202ENSMUST00000097902 1191 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Col9a1Q05722 Fbrsl1-206ENSMUST00000198834 2571 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Col9a1Q05722 Pgc-201ENSMUST00000024782 1388 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Col9a1Q05722 Syncrip-205ENSMUST00000173801 2944 ntAPPRIS ALT1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Col9a1Q05722 Sox30-201ENSMUST00000049038 2997 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Col9a1Q05722 Hsf4-201ENSMUST00000036127 1739 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Col9a1Q05722 Kcnab3-201ENSMUST00000018614 2538 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Col9a1Q05722 Hgsnat-201ENSMUST00000037609 2694 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Col9a1Q05722 Dbn1-202ENSMUST00000109921 2378 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Col9a1Q05722 Etfrf1-205ENSMUST00000111724 1618 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Col9a1Q05722 Gm14641-201ENSMUST00000136486 452 ntTSL 3 BASIC15.3■□□□□ 0.04
Col9a1Q05722 Tppp3-203ENSMUST00000177126 1396 ntAPPRIS P1 TSL 3 BASIC15.3■□□□□ 0.04
Col9a1Q05722 Foxf1-201ENSMUST00000181504 2415 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Col9a1Q05722 Ilkap-208ENSMUST00000187306 377 ntTSL 5 BASIC15.3■□□□□ 0.04
Col9a1Q05722 Dph5-204ENSMUST00000189799 1558 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
Col9a1Q05722 1700094J05Rik-202ENSMUST00000190491 997 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Col9a1Q05722 Gm38241-201ENSMUST00000192641 898 ntBASIC15.3■□□□□ 0.04
Col9a1Q05722 E330011M16Rik-201ENSMUST00000193614 1794 ntBASIC15.3■□□□□ 0.04
Col9a1Q05722 Gm35409-201ENSMUST00000196412 1102 ntTSL 5 BASIC15.3■□□□□ 0.04
Col9a1Q05722 Zfp821-203ENSMUST00000212000 2081 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Col9a1Q05722 AC117588.1-201ENSMUST00000228510 999 ntBASIC15.3■□□□□ 0.04
Col9a1Q05722 Clns1a-201ENSMUST00000026506 1504 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Col9a1Q05722 Adm-201ENSMUST00000033054 1390 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Col9a1Q05722 Eef1akmt2-201ENSMUST00000033257 1107 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Col9a1Q05722 Gstm1-201ENSMUST00000004140 1289 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Col9a1Q05722 Tex264-201ENSMUST00000046735 1391 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Col9a1Q05722 Ubl4b-201ENSMUST00000052853 1387 ntAPPRIS P1 BASIC15.3■□□□□ 0.04
Col9a1Q05722 Exoc3l2-202ENSMUST00000137613 4016 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
Col9a1Q05722 Hs6st1-201ENSMUST00000088174 3719 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Col9a1Q05722 Trim44-201ENSMUST00000102573 5612 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Col9a1Q05722 Fgfrl1-201ENSMUST00000013633 2329 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Col9a1Q05722 Mmp28-201ENSMUST00000021020 2311 ntAPPRIS P4 TSL 1 (best) BASIC15.29■□□□□ 0.04
Col9a1Q05722 Dtx3-204ENSMUST00000130855 1925 ntAPPRIS ALT1 TSL 5 BASIC15.29■□□□□ 0.04
Col9a1Q05722 Smarcc1-207ENSMUST00000199896 5773 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Col9a1Q05722 Dtx3-201ENSMUST00000038217 1944 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Col9a1Q05722 Ccdc115-201ENSMUST00000042493 1705 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Col9a1Q05722 Ppif-201ENSMUST00000022419 1549 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Col9a1Q05722 Miga1-205ENSMUST00000199397 2842 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Col9a1Q05722 Slco3a1-202ENSMUST00000098371 2709 ntAPPRIS ALT1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Col9a1Q05722 Tssc4-202ENSMUST00000105920 895 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Col9a1Q05722 Hcrt-202ENSMUST00000107360 509 ntTSL 5 BASIC15.29■□□□□ 0.04
Col9a1Q05722 Gm14542-201ENSMUST00000118460 1248 ntBASIC15.29■□□□□ 0.04
Col9a1Q05722 Ankzf1-201ENSMUST00000127625 1167 ntTSL 5 BASIC15.29■□□□□ 0.04
Col9a1Q05722 Gm12454-201ENSMUST00000139119 978 ntTSL 2 BASIC15.29■□□□□ 0.04
Col9a1Q05722 Tex30-211ENSMUST00000150911 960 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
Col9a1Q05722 B230217C12Rik-204ENSMUST00000170806 1118 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Col9a1Q05722 Gm29667-201ENSMUST00000190817 490 ntBASIC15.29■□□□□ 0.04
Col9a1Q05722 Gm4756-204ENSMUST00000209038 990 ntTSL 5 BASIC15.29■□□□□ 0.04
Col9a1Q05722 Gm36634-201ENSMUST00000218356 1259 ntTSL 3 BASIC15.29■□□□□ 0.04
Col9a1Q05722 Myl3-201ENSMUST00000079784 937 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Col9a1Q05722 Larp6-201ENSMUST00000038407 2440 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Col9a1Q05722 Klc1-202ENSMUST00000118471 2272 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Col9a1Q05722 Igsf8-201ENSMUST00000039506 2278 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Col9a1Q05722 Tsnax-202ENSMUST00000212603 2169 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Col9a1Q05722 Sema6d-203ENSMUST00000077847 6444 ntTSL 5 BASIC15.29■□□□□ 0.04
Col9a1Q05722 Gm43808-201ENSMUST00000202534 2065 ntBASIC15.29■□□□□ 0.04
Col9a1Q05722 Gm16976-201ENSMUST00000099718 1894 ntTSL 5 BASIC15.29■□□□□ 0.04
Col9a1Q05722 Hmbox1-203ENSMUST00000175744 1771 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Col9a1Q05722 Alkbh5-201ENSMUST00000044250 5730 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Col9a1Q05722 Ilvbl-204ENSMUST00000218271 1606 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Col9a1Q05722 Dnajc9-201ENSMUST00000022345 1631 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Col9a1Q05722 Zfyve19-202ENSMUST00000102519 1505 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Col9a1Q05722 Tgfb1-201ENSMUST00000002678 2175 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Col9a1Q05722 Kmt2b-201ENSMUST00000006470 8469 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
Col9a1Q05722 Slain2-202ENSMUST00000144843 4833 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Col9a1Q05722 Rrbp1-202ENSMUST00000037875 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Col9a1Q05722 Ctnnbip1-201ENSMUST00000030839 2674 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Col9a1Q05722 Rps13-203ENSMUST00000205490 1317 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Col9a1Q05722 Notch4-201ENSMUST00000015612 6591 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Col9a1Q05722 Rab1a-203ENSMUST00000109602 2626 ntTSL 5 BASIC15.28■□□□□ 0.04
Col9a1Q05722 Gm14399-202ENSMUST00000108929 813 ntTSL 5 BASIC15.28■□□□□ 0.04
Col9a1Q05722 Gm12960-201ENSMUST00000120017 1066 ntBASIC15.28■□□□□ 0.04
Col9a1Q05722 Rps10-ps2-201ENSMUST00000127484 496 ntBASIC15.28■□□□□ 0.04
Col9a1Q05722 4833428L15Rik-201ENSMUST00000181230 1259 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Col9a1Q05722 Gm27680-201ENSMUST00000184192 160 ntBASIC15.28■□□□□ 0.04
Col9a1Q05722 Gm37917-201ENSMUST00000194711 392 ntBASIC15.28■□□□□ 0.04
Col9a1Q05722 Gm44344-201ENSMUST00000200287 129 ntBASIC15.28■□□□□ 0.04
Col9a1Q05722 Gm19265-201ENSMUST00000201818 894 ntTSL 3 BASIC15.28■□□□□ 0.04
Col9a1Q05722 AC159474.1-201ENSMUST00000218454 374 ntTSL 3 BASIC15.28■□□□□ 0.04
Col9a1Q05722 Atp6v1g1-201ENSMUST00000035301 1135 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Col9a1Q05722 Vps25-202ENSMUST00000042477 1106 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Col9a1Q05722 Rps21-201ENSMUST00000059080 394 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Retrieved 100 of 76,532 protein–RNA pairs in 29.9 ms