Protein–RNA interactions for Protein: P97386

Lig3, DNA ligase 3, mousemouse

Predictions only

Length 1,015 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lig3P97386 Nptn-211ENSMUST00000177064 582 ntTSL 5 BASIC17.09■□□□□ 0.33
Lig3P97386 Auts2-212ENSMUST00000178555 309 ntBASIC17.09■□□□□ 0.33
Lig3P97386 Gm29456-201ENSMUST00000189894 768 ntTSL 3 BASIC17.09■□□□□ 0.33
Lig3P97386 Ap2s1-204ENSMUST00000205607 372 ntTSL 3 BASIC17.09■□□□□ 0.33
Lig3P97386 AC225888.1-201ENSMUST00000227184 728 ntBASIC17.09■□□□□ 0.33
Lig3P97386 Apopt1-201ENSMUST00000040519 1065 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
Lig3P97386 Lce1l-201ENSMUST00000054426 670 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Lig3P97386 6030408B16Rik-201ENSMUST00000071328 1155 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
Lig3P97386 Psma5-201ENSMUST00000090569 1239 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Lig3P97386 Lgr6-201ENSMUST00000044828 6675 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Lig3P97386 Snupn-201ENSMUST00000068856 1391 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Lig3P97386 Nkapl-201ENSMUST00000068235 1463 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
Lig3P97386 1700025L06Rik-203ENSMUST00000211477 1623 ntTSL 5 BASIC17.09■□□□□ 0.33
Lig3P97386 Il11ra1-202ENSMUST00000108040 1837 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
Lig3P97386 Comtd1-202ENSMUST00000124549 2314 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Lig3P97386 Impdh1-205ENSMUST00000160878 2314 ntTSL 5 BASIC17.09■□□□□ 0.33
Lig3P97386 Rgl3-201ENSMUST00000045726 2543 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Lig3P97386 Wnt10b-206ENSMUST00000228546 2709 ntBASIC17.09■□□□□ 0.33
Lig3P97386 Tada3-201ENSMUST00000032410 2848 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Lig3P97386 Fus-203ENSMUST00000106251 5536 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
Lig3P97386 Bicd2-203ENSMUST00000110085 4588 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.33
Lig3P97386 Agbl3-204ENSMUST00000115016 3734 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.33
Lig3P97386 Gnb1-203ENSMUST00000165335 3143 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Lig3P97386 Elf2-202ENSMUST00000091144 2366 ntTSL 5 BASIC17.08■□□□□ 0.33
Lig3P97386 Evc-202ENSMUST00000114148 2119 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.33
Lig3P97386 Rhcg-201ENSMUST00000032766 2090 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Lig3P97386 AL590614.2-201ENSMUST00000225374 1937 ntBASIC17.08■□□□□ 0.33
Lig3P97386 Lrrfip2-207ENSMUST00000197256 1819 ntTSL 5 BASIC17.08■□□□□ 0.33
Lig3P97386 Rassf1-202ENSMUST00000093786 1787 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Lig3P97386 Crhbp-201ENSMUST00000045583 1701 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Lig3P97386 Bfsp2-201ENSMUST00000124310 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Lig3P97386 Pcolce-202ENSMUST00000054564 1585 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.32
Lig3P97386 Ppp1r2-201ENSMUST00000060188 4078 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Lig3P97386 Shank1-202ENSMUST00000107935 6649 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.32
Lig3P97386 Pde3b-201ENSMUST00000032909 6573 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Lig3P97386 Gm14494-201ENSMUST00000118786 435 ntBASIC17.08■□□□□ 0.32
Lig3P97386 Gm14822-201ENSMUST00000122247 291 ntBASIC17.08■□□□□ 0.32
Lig3P97386 Dbi-207ENSMUST00000151708 491 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Lig3P97386 Urah-204ENSMUST00000185612 716 ntAPPRIS P3 TSL 3 BASIC17.08■□□□□ 0.32
Lig3P97386 Ndufb9-201ENSMUST00000022980 704 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Lig3P97386 Gnmt-201ENSMUST00000002846 1035 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Lig3P97386 Fam26f-201ENSMUST00000062784 1094 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Lig3P97386 Gm10190-201ENSMUST00000086549 324 ntAPPRIS P1 BASIC17.08■□□□□ 0.32
Lig3P97386 Efcab14-202ENSMUST00000106522 2636 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Lig3P97386 Mccc1-201ENSMUST00000029259 2455 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Lig3P97386 Tef-201ENSMUST00000023024 4079 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Lig3P97386 Rptor-201ENSMUST00000026671 6594 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Lig3P97386 Gdf3-201ENSMUST00000032211 2125 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Lig3P97386 Slc38a10-202ENSMUST00000053692 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
Lig3P97386 Ebf3-208ENSMUST00000210774 2994 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Lig3P97386 Krt83-201ENSMUST00000023718 1756 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Lig3P97386 Slc6a1-204ENSMUST00000204074 1740 ntTSL 5 BASIC17.07■□□□□ 0.32
Lig3P97386 Gja4-201ENSMUST00000053753 1685 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Lig3P97386 Wdr26-207ENSMUST00000162819 6619 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Lig3P97386 AC093043.3-201ENSMUST00000226531 2273 ntBASIC17.07■□□□□ 0.32
Lig3P97386 Arhgap44-201ENSMUST00000047463 4074 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Lig3P97386 Akirin1-201ENSMUST00000102636 3052 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Lig3P97386 Plk1-201ENSMUST00000033154 2199 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Lig3P97386 Tll1-201ENSMUST00000066166 4767 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Lig3P97386 Naa10-206ENSMUST00000114391 834 ntTSL 5 BASIC17.07■□□□□ 0.32
Lig3P97386 Gssos1-201ENSMUST00000142509 716 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Lig3P97386 Cabp2-205ENSMUST00000162908 911 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
Lig3P97386 1700025N23Rik-201ENSMUST00000186189 915 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Lig3P97386 Gm29707-201ENSMUST00000196325 491 ntBASIC17.07■□□□□ 0.32
Lig3P97386 Gm16845-202ENSMUST00000216270 567 ntTSL 2 BASIC17.07■□□□□ 0.32
Lig3P97386 AC164441.1-201ENSMUST00000221369 1004 ntTSL 5 BASIC17.07■□□□□ 0.32
Lig3P97386 Nudt14-203ENSMUST00000221497 355 ntTSL 2 BASIC17.07■□□□□ 0.32
Lig3P97386 Lrr1-203ENSMUST00000222520 767 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Lig3P97386 Gpank1-201ENSMUST00000052167 1295 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
Lig3P97386 Ydjc-201ENSMUST00000069064 1297 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Lig3P97386 Capn10-201ENSMUST00000027488 2902 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Lig3P97386 Ret-202ENSMUST00000088790 4497 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Lig3P97386 Slc35a1-201ENSMUST00000029970 2039 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Lig3P97386 Capn15-205ENSMUST00000212520 5216 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Lig3P97386 Hyls1-201ENSMUST00000115110 1973 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Lig3P97386 Adgrb2-205ENSMUST00000106017 5104 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
Lig3P97386 Abhd16a-201ENSMUST00000007251 1945 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Lig3P97386 Scrt1-201ENSMUST00000096365 4010 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Lig3P97386 Men1-205ENSMUST00000113501 2508 ntTSL 5 BASIC17.07■□□□□ 0.32
Lig3P97386 Spcs2-201ENSMUST00000036274 2909 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Lig3P97386 Efemp2-204ENSMUST00000165485 1557 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Lig3P97386 Gm10710-201ENSMUST00000047876 3971 ntBASIC17.06■□□□□ 0.32
Lig3P97386 Enoph1-201ENSMUST00000031268 1420 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Lig3P97386 Ankrd23-201ENSMUST00000054665 1964 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Lig3P97386 Ccdc24-201ENSMUST00000106422 1365 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Lig3P97386 Dnajc6-205ENSMUST00000106933 5191 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Lig3P97386 Sept11-205ENSMUST00000201700 3478 ntAPPRIS ALT1 TSL 2 BASIC17.06■□□□□ 0.32
Lig3P97386 Wnk2-207ENSMUST00000159559 6584 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
Lig3P97386 Fosl2-201ENSMUST00000031017 6537 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Lig3P97386 B9d2-201ENSMUST00000108403 1021 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Lig3P97386 Gdap1l1-203ENSMUST00000109421 1206 ntAPPRIS ALT1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Lig3P97386 Rbmx-206ENSMUST00000143310 1296 ntTSL 5 BASIC17.06■□□□□ 0.32
Lig3P97386 Tsfm-207ENSMUST00000152054 655 ntTSL 3 BASIC17.06■□□□□ 0.32
Lig3P97386 Thrsp-201ENSMUST00000043077 1277 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Lig3P97386 Angptl8-201ENSMUST00000058777 865 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Lig3P97386 Olfr601-201ENSMUST00000080474 990 ntAPPRIS P1 BASIC17.06■□□□□ 0.32
Lig3P97386 Taz-202ENSMUST00000114180 1786 ntAPPRIS ALT1 TSL 5 BASIC17.06■□□□□ 0.32
Lig3P97386 Sfrp4-201ENSMUST00000002883 1764 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Lig3P97386 Tulp1-202ENSMUST00000114794 1738 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Lig3P97386 Sox13-205ENSMUST00000153799 3693 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Retrieved 100 of 76,532 protein–RNA pairs in 28.5 ms