Protein–RNA interactions for Protein: P53783

Sox1, Transcription factor SOX-1, mousemouse

Predictions only

Length 391 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox1P53783 Gm15321-201ENSMUST00000121290 288 ntBASIC15.96■□□□□ 0.15
Sox1P53783 Gm13066-201ENSMUST00000145263 884 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
Sox1P53783 Gm43397-201ENSMUST00000196422 481 ntTSL 3 BASIC15.96■□□□□ 0.15
Sox1P53783 Tmem136-202ENSMUST00000213544 2463 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
Sox1P53783 Ddx41-201ENSMUST00000021956 2205 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
Sox1P53783 Pde7b-206ENSMUST00000170265 1380 ntAPPRIS ALT2 TSL 5 BASIC15.96■□□□□ 0.15
Sox1P53783 Kdm5b-203ENSMUST00000112198 5413 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.15
Sox1P53783 Clasrp-201ENSMUST00000086041 2180 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.14
Sox1P53783 Zfp219-204ENSMUST00000226522 2804 ntAPPRIS P2 BASIC15.95■□□□□ 0.14
Sox1P53783 Ldlrad4-201ENSMUST00000063775 2493 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Sox1P53783 Snx21-201ENSMUST00000056181 2590 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Sox1P53783 Prdm6-203ENSMUST00000115399 2227 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
Sox1P53783 Gm26681-201ENSMUST00000180851 1440 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
Sox1P53783 Lmtk2-201ENSMUST00000041804 8114 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Sox1P53783 Eps8-201ENSMUST00000058210 4567 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Sox1P53783 Slc35g3-201ENSMUST00000102586 1618 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Sox1P53783 Arhgef9-208ENSMUST00000128565 2285 ntTSL 5 BASIC15.95■□□□□ 0.14
Sox1P53783 Fam129c-208ENSMUST00000143662 2267 ntAPPRIS P1 TSL 5 BASIC15.95■□□□□ 0.14
Sox1P53783 Gm15690-201ENSMUST00000128728 432 ntTSL 3 BASIC15.95■□□□□ 0.14
Sox1P53783 Otx2os1-202ENSMUST00000183803 743 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
Sox1P53783 Gm27838-201ENSMUST00000184829 128 ntBASIC15.95■□□□□ 0.14
Sox1P53783 Gm8515-201ENSMUST00000194852 576 ntBASIC15.95■□□□□ 0.14
Sox1P53783 AI467606-202ENSMUST00000206102 832 ntAPPRIS P1 TSL 5 BASIC15.95■□□□□ 0.14
Sox1P53783 Gm34964-201ENSMUST00000207398 417 ntTSL 5 BASIC15.95■□□□□ 0.14
Sox1P53783 5330438I03Rik-201ENSMUST00000168347 2845 ntBASIC15.95■□□□□ 0.14
Sox1P53783 Gm4219-201ENSMUST00000168140 2143 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
Sox1P53783 Agfg2-201ENSMUST00000031736 2893 ntAPPRIS P3 TSL 1 (best) BASIC15.95■□□□□ 0.14
Sox1P53783 Socs4-201ENSMUST00000065562 6877 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Sox1P53783 Rpf1-201ENSMUST00000029838 1661 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Sox1P53783 Ric1-201ENSMUST00000043610 7190 ntAPPRIS P1 TSL 5 BASIC15.94■□□□□ 0.14
Sox1P53783 Gm11620-201ENSMUST00000118770 1845 ntBASIC15.94■□□□□ 0.14
Sox1P53783 Osbpl1a-207ENSMUST00000121808 3030 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
Sox1P53783 Nxf1-202ENSMUST00000010248 748 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
Sox1P53783 Gm12008-201ENSMUST00000117791 755 ntBASIC15.94■□□□□ 0.14
Sox1P53783 Gm15824-201ENSMUST00000119516 955 ntBASIC15.94■□□□□ 0.14
Sox1P53783 Pomc-201ENSMUST00000020990 1031 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Sox1P53783 Gm9908-201ENSMUST00000211534 448 ntBASIC15.94■□□□□ 0.14
Sox1P53783 4933405L10Rik-202ENSMUST00000211852 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC15.94■□□□□ 0.14
Sox1P53783 Polr2h-201ENSMUST00000021405 950 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Sox1P53783 Tspan3-203ENSMUST00000215906 842 ntTSL 3 BASIC15.94■□□□□ 0.14
Sox1P53783 Mzt2-201ENSMUST00000023351 1035 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Sox1P53783 Lce1g-201ENSMUST00000029527 925 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Sox1P53783 Cited1-201ENSMUST00000050551 901 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Sox1P53783 Hfe-201ENSMUST00000006787 516 ntTSL 5 BASIC15.94■□□□□ 0.14
Sox1P53783 Hfe-203ENSMUST00000091707 816 ntTSL 5 BASIC15.94■□□□□ 0.14
Sox1P53783 Csnk1e-202ENSMUST00000120859 1391 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Sox1P53783 Gopc-202ENSMUST00000105475 4317 ntAPPRIS ALT2 TSL 5 BASIC15.94■□□□□ 0.14
Sox1P53783 Gm7901-201ENSMUST00000120430 1597 ntBASIC15.94■□□□□ 0.14
Sox1P53783 Ppp1r11-201ENSMUST00000040402 1599 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Sox1P53783 Ryr2-203ENSMUST00000220597 4924 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
Sox1P53783 Cacng6-202ENSMUST00000183200 1977 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Sox1P53783 Tom1l2-201ENSMUST00000064019 2151 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
Sox1P53783 1810013L24Rik-201ENSMUST00000023150 4066 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Sox1P53783 Rrbp1-202ENSMUST00000037875 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC15.94■□□□□ 0.14
Sox1P53783 Snip1-201ENSMUST00000052183 2345 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Sox1P53783 Lysmd4-209ENSMUST00000208998 2110 ntAPPRIS P2 TSL 1 (best) BASIC15.94■□□□□ 0.14
Sox1P53783 Parp16-205ENSMUST00000216702 1643 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Sox1P53783 Gpat3-203ENSMUST00000112887 3059 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Sox1P53783 Rnaseh2a-202ENSMUST00000109736 2981 ntAPPRIS P1 TSL 5 BASIC15.93■□□□□ 0.14
Sox1P53783 Sarm1-202ENSMUST00000108287 4868 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
Sox1P53783 Paqr4-201ENSMUST00000024702 2507 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Sox1P53783 Zbtb48-201ENSMUST00000066715 2218 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Sox1P53783 Pold4-201ENSMUST00000025773 910 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Sox1P53783 Gm13446-201ENSMUST00000124555 2033 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
Sox1P53783 Gfy-201ENSMUST00000179443 1849 ntAPPRIS P1 TSL 5 BASIC15.93■□□□□ 0.14
Sox1P53783 Cidec-202ENSMUST00000113089 1720 ntAPPRIS P2 TSL 1 (best) BASIC15.93■□□□□ 0.14
Sox1P53783 AC154231.1-201ENSMUST00000220564 2175 ntBASIC15.93■□□□□ 0.14
Sox1P53783 Twf2-204ENSMUST00000188650 1508 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
Sox1P53783 Ldhal6b-201ENSMUST00000189788 1445 ntAPPRIS P1 BASIC15.93■□□□□ 0.14
Sox1P53783 A230087F16Rik-202ENSMUST00000181561 1303 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
Sox1P53783 Hs3st1-201ENSMUST00000053116 1684 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Sox1P53783 Tubb4b-201ENSMUST00000043584 1598 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Sox1P53783 Fam69a-201ENSMUST00000031198 2721 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Sox1P53783 Hand1-203ENSMUST00000160392 1806 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Sox1P53783 Ubl4b-201ENSMUST00000052853 1387 ntAPPRIS P1 BASIC15.92■□□□□ 0.14
Sox1P53783 Wdyhv1-201ENSMUST00000067563 1383 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Sox1P53783 Il17rb-201ENSMUST00000016110 2061 ntAPPRIS P2 TSL 1 (best) BASIC15.92■□□□□ 0.14
Sox1P53783 Smim15-205ENSMUST00000225972 2097 ntAPPRIS P1 BASIC15.92■□□□□ 0.14
Sox1P53783 Gm15199-201ENSMUST00000129933 542 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
Sox1P53783 Gm15384-201ENSMUST00000138832 486 ntTSL 5 BASIC15.92■□□□□ 0.14
Sox1P53783 Klk11-202ENSMUST00000171458 1260 ntAPPRIS P3 TSL 2 BASIC15.92■□□□□ 0.14
Sox1P53783 Ighv5-13-201ENSMUST00000193550 290 ntBASIC15.92■□□□□ 0.14
Sox1P53783 Spata33-205ENSMUST00000212523 486 ntTSL 3 BASIC15.92■□□□□ 0.14
Sox1P53783 Trim67-202ENSMUST00000167588 8735 ntAPPRIS P1 TSL 5 BASIC15.92■□□□□ 0.14
Sox1P53783 Hikeshi-206ENSMUST00000153470 2224 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Sox1P53783 Arhgef7-205ENSMUST00000110909 4926 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
Sox1P53783 Rbm42-202ENSMUST00000108141 1526 ntAPPRIS ALT2 TSL 5 BASIC15.92■□□□□ 0.14
Sox1P53783 Tssc4-201ENSMUST00000060433 1519 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Sox1P53783 Gm45844-202ENSMUST00000209325 2450 ntAPPRIS ALT2 TSL 1 (best) BASIC15.92■□□□□ 0.14
Sox1P53783 Arid3c-201ENSMUST00000084698 1417 ntAPPRIS P3 TSL 1 (best) BASIC15.92■□□□□ 0.14
Sox1P53783 Cd82-205ENSMUST00000116457 1683 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Sox1P53783 Pitx2-207ENSMUST00000174661 1942 ntAPPRIS P3 TSL 1 (best) BASIC15.92■□□□□ 0.14
Sox1P53783 Camkk2-211ENSMUST00000200109 2751 ntAPPRIS P3 TSL 1 (best) BASIC15.92■□□□□ 0.14
Sox1P53783 Fgf22-202ENSMUST00000219228 2167 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Sox1P53783 Fam72a-201ENSMUST00000068613 2191 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Sox1P53783 Gm26669-201ENSMUST00000181323 1808 ntTSL 5 BASIC15.91■□□□□ 0.14
Sox1P53783 Tgfb1i1-207ENSMUST00000167965 1746 ntAPPRIS P2 TSL 1 (best) BASIC15.91■□□□□ 0.14
Sox1P53783 Cspg5-202ENSMUST00000196060 3790 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
Sox1P53783 Fam199x-201ENSMUST00000047852 8299 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Sox1P53783 Gm6973-201ENSMUST00000117080 721 ntBASIC15.91■□□□□ 0.14
Retrieved 100 of 76,532 protein–RNA pairs in 38.7 ms