Protein–RNA interactions for Protein: P39061

Col18a1, Collagen alpha-1(XVIII) chain, mousemouse

Predictions only

Length 1,774 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col18a1P39061 Rbpms2-202ENSMUST00000169003 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
Col18a1P39061 Cpne6-207ENSMUST00000171643 2016 ntAPPRIS P3 TSL 5 BASIC20.66■□□□□ 0.9
Col18a1P39061 Rnf13-205ENSMUST00000198214 2027 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Col18a1P39061 Gm29208-203ENSMUST00000213687 2219 ntTSL 5 BASIC20.65■□□□□ 0.9
Col18a1P39061 Fam131a-202ENSMUST00000118919 2262 ntTSL 5 BASIC20.65■□□□□ 0.9
Col18a1P39061 Dffb-201ENSMUST00000030893 2093 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Col18a1P39061 Gm17150-201ENSMUST00000165577 381 ntBASIC20.65■□□□□ 0.9
Col18a1P39061 Prss48-201ENSMUST00000061343 949 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Col18a1P39061 Ifnl2-201ENSMUST00000081684 702 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Col18a1P39061 Dmrtc1c1-201ENSMUST00000118218 1611 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Col18a1P39061 Dmrtc1c2-203ENSMUST00000120314 1611 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
Col18a1P39061 Zfp647-201ENSMUST00000048854 1608 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Col18a1P39061 Btbd10-203ENSMUST00000119278 2394 ntTSL 5 BASIC20.65■□□□□ 0.9
Col18a1P39061 Nup98-205ENSMUST00000211022 3132 ntTSL 2 BASIC20.65■□□□□ 0.9
Col18a1P39061 Arrdc1-202ENSMUST00000102935 1574 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
Col18a1P39061 Dcaf13-201ENSMUST00000022909 1551 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Col18a1P39061 Tigd3-201ENSMUST00000055911 2114 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Col18a1P39061 Sri-205ENSMUST00000148633 2251 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Col18a1P39061 F830208F22Rik-202ENSMUST00000143732 2891 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Col18a1P39061 Prdm11-201ENSMUST00000111272 3012 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
Col18a1P39061 Htr3a-202ENSMUST00000217289 1987 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.9
Col18a1P39061 Tnip2-203ENSMUST00000114359 1642 ntTSL 5 BASIC20.64■□□□□ 0.9
Col18a1P39061 Tmem219-204ENSMUST00000121532 915 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
Col18a1P39061 Gm13134-202ENSMUST00000144347 387 ntTSL 2 BASIC20.64■□□□□ 0.9
Col18a1P39061 Dupd1-202ENSMUST00000224735 548 ntBASIC20.64■□□□□ 0.9
Col18a1P39061 Etnk1-204ENSMUST00000205256 2647 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
Col18a1P39061 Phtf1-203ENSMUST00000090685 3006 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
Col18a1P39061 Prrx2-202ENSMUST00000113592 1070 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
Col18a1P39061 Gm18624-201ENSMUST00000220966 658 ntBASIC20.64■□□□□ 0.89
Col18a1P39061 Gm15823-201ENSMUST00000064305 670 ntBASIC20.64■□□□□ 0.89
Col18a1P39061 Cog2-201ENSMUST00000034460 2825 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Col18a1P39061 Eml4-202ENSMUST00000096766 5445 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
Col18a1P39061 Elf3-201ENSMUST00000003135 2095 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
Col18a1P39061 Klhl40-201ENSMUST00000098272 2370 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Col18a1P39061 Zfp74-203ENSMUST00000108211 1278 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Col18a1P39061 H13-203ENSMUST00000109825 1063 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Col18a1P39061 1700007J10Rik-202ENSMUST00000153431 1111 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Col18a1P39061 CT010506.4-201ENSMUST00000225457 351 ntBASIC20.63■□□□□ 0.89
Col18a1P39061 Vps25-202ENSMUST00000042477 1106 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Col18a1P39061 Swi5-201ENSMUST00000050410 775 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
Col18a1P39061 Ndor1-202ENSMUST00000114349 2336 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Col18a1P39061 Sema6c-214ENSMUST00000202315 2843 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
Col18a1P39061 2810459M11Rik-202ENSMUST00000165824 3331 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
Col18a1P39061 Cd2bp2-201ENSMUST00000035771 1309 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Col18a1P39061 E230001N04Rik-202ENSMUST00000181029 2091 ntBASIC20.63■□□□□ 0.89
Col18a1P39061 Klk12-201ENSMUST00000014063 924 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Col18a1P39061 1700042O10Rik-201ENSMUST00000151032 1075 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Col18a1P39061 Gas5-210ENSMUST00000159706 557 ntTSL 2 BASIC20.62■□□□□ 0.89
Col18a1P39061 Snu13-203ENSMUST00000166578 1061 ntTSL 2 BASIC20.62■□□□□ 0.89
Col18a1P39061 Gm3436-201ENSMUST00000179930 840 ntBASIC20.62■□□□□ 0.89
Col18a1P39061 Gm38182-203ENSMUST00000192984 993 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Col18a1P39061 Pcdhgc5-204ENSMUST00000193941 593 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Col18a1P39061 Cspg5-205ENSMUST00000199736 2107 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Col18a1P39061 Coq7-205ENSMUST00000209146 799 ntTSL 3 BASIC20.62■□□□□ 0.89
Col18a1P39061 Taf11-201ENSMUST00000025057 1220 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Col18a1P39061 Anp32a-201ENSMUST00000085519 2113 ntAPPRIS P2 TSL 1 (best) BASIC20.62■□□□□ 0.89
Col18a1P39061 Gbe1-206ENSMUST00000170464 2736 ntAPPRIS ALT2 TSL 5 BASIC20.62■□□□□ 0.89
Col18a1P39061 Mrps2-201ENSMUST00000038600 2080 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Col18a1P39061 Gfm2-211ENSMUST00000161913 1829 ntTSL 2 BASIC20.62■□□□□ 0.89
Col18a1P39061 Zfp446-204ENSMUST00000108537 2178 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
Col18a1P39061 Auh-202ENSMUST00000110031 3235 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Col18a1P39061 Gm8131-201ENSMUST00000213783 1570 ntBASIC20.62■□□□□ 0.89
Col18a1P39061 Gm13032-201ENSMUST00000151848 2001 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Col18a1P39061 Gm9115-201ENSMUST00000120192 1348 ntBASIC20.62■□□□□ 0.89
Col18a1P39061 Pde4d-208ENSMUST00000120671 2455 ntTSL 5 BASIC20.62■□□□□ 0.89
Col18a1P39061 Cd1d1-202ENSMUST00000063869 1421 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Col18a1P39061 Pigw-201ENSMUST00000067058 2675 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Col18a1P39061 2310016G11Rik-202ENSMUST00000209111 733 ntTSL 3 BASIC20.62■□□□□ 0.89
Col18a1P39061 AC090659.2-201ENSMUST00000225378 1186 ntBASIC20.62■□□□□ 0.89
Col18a1P39061 Gm20445-201ENSMUST00000061905 565 ntBASIC20.62■□□□□ 0.89
Col18a1P39061 Krtap19-3-201ENSMUST00000075284 526 ntAPPRIS P1 BASIC20.62■□□□□ 0.89
Col18a1P39061 Art3-205ENSMUST00000120193 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
Col18a1P39061 Ecsit-201ENSMUST00000098937 1673 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Col18a1P39061 Gm21854-201ENSMUST00000179901 471 ntBASIC20.61■□□□□ 0.89
Col18a1P39061 1700020A23Rik-201ENSMUST00000028898 712 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Col18a1P39061 Fggy-202ENSMUST00000079223 1891 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
Col18a1P39061 Exog-202ENSMUST00000164213 2627 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Col18a1P39061 Serpine3-201ENSMUST00000171692 1402 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Col18a1P39061 Zdhhc19-201ENSMUST00000064192 1323 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Col18a1P39061 Mpped2-202ENSMUST00000111063 2848 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Col18a1P39061 Mbl1-202ENSMUST00000225792 1563 ntAPPRIS P1 BASIC20.6■□□□□ 0.89
Col18a1P39061 Tatdn2-202ENSMUST00000113022 2416 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
Col18a1P39061 Selenoh-202ENSMUST00000102647 654 ntAPPRIS P2 TSL 1 (best) BASIC20.6■□□□□ 0.89
Col18a1P39061 Gm16175-201ENSMUST00000128181 248 ntTSL 3 BASIC20.6■□□□□ 0.89
Col18a1P39061 Amacr-201ENSMUST00000070877 2577 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Col18a1P39061 Ddx28-201ENSMUST00000058579 2262 ntAPPRIS P1 BASIC20.6■□□□□ 0.89
Col18a1P39061 AC115863.1-201ENSMUST00000214815 1813 ntBASIC20.6■□□□□ 0.89
Col18a1P39061 Ormdl3-201ENSMUST00000052919 2184 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Col18a1P39061 Ciz1-201ENSMUST00000048964 2771 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
Col18a1P39061 Tex22-203ENSMUST00000146107 1130 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
Col18a1P39061 1700028J19Rik-203ENSMUST00000206686 1166 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Col18a1P39061 Srd5a2-201ENSMUST00000043458 854 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Col18a1P39061 Schip1-201ENSMUST00000029346 2201 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Col18a1P39061 Plscr3-202ENSMUST00000108632 1835 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Col18a1P39061 Cnppd1-208ENSMUST00000190679 2062 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Col18a1P39061 Chst8-204ENSMUST00000205259 1980 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
Col18a1P39061 AC131743.5-201ENSMUST00000220775 1618 ntBASIC20.59■□□□□ 0.89
Col18a1P39061 Chsy3-201ENSMUST00000080721 2931 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Col18a1P39061 Cd63-ps-201ENSMUST00000145417 875 ntBASIC20.59■□□□□ 0.89
Col18a1P39061 Wdr74-201ENSMUST00000049424 1204 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Retrieved 100 of 76,532 protein–RNA pairs in 74.4 ms