Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Txndc11-201ENSMUST00000038424 3095 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Col1a1P11087 Rnf25-202ENSMUST00000113721 1451 ntAPPRIS ALT1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Col1a1P11087 Pcbp3-206ENSMUST00000168465 1748 ntAPPRIS P3 TSL 5 BASIC18.21■□□□□ 0.51
Col1a1P11087 Sucla2-203ENSMUST00000160507 2229 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Col1a1P11087 Cops7b-201ENSMUST00000027446 2231 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Col1a1P11087 Esrrb-206ENSMUST00000167891 1344 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Col1a1P11087 Majin-202ENSMUST00000113528 1562 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Col1a1P11087 Gnpda2-202ENSMUST00000120789 1594 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Col1a1P11087 Mvd-201ENSMUST00000006692 1756 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.5
Col1a1P11087 Krtap1-3-201ENSMUST00000104930 879 ntAPPRIS P1 BASIC18.2■□□□□ 0.5
Col1a1P11087 Anapc15-204ENSMUST00000106973 650 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
Col1a1P11087 Gm6415-201ENSMUST00000118488 348 ntBASIC18.2■□□□□ 0.5
Col1a1P11087 AC155937.1-202ENSMUST00000156229 621 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
Col1a1P11087 Tmprss5-204ENSMUST00000167095 1146 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
Col1a1P11087 H2-Pa-201ENSMUST00000182803 626 ntBASIC18.2■□□□□ 0.5
Col1a1P11087 Mir99ahg-211ENSMUST00000183099 1189 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Col1a1P11087 Cldn13-201ENSMUST00000008987 1067 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Col1a1P11087 Mcoln2-202ENSMUST00000098524 2492 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
Col1a1P11087 Hnrnpa2b1-201ENSMUST00000069949 1647 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Col1a1P11087 Matk-202ENSMUST00000117488 1980 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
Col1a1P11087 Dyx1c1-201ENSMUST00000034734 1975 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
Col1a1P11087 Cebpg-202ENSMUST00000130491 4709 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Col1a1P11087 Nrxn2-208ENSMUST00000137166 6314 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
Col1a1P11087 Lhfpl3-202ENSMUST00000197992 3115 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Col1a1P11087 Plekha4-202ENSMUST00000209517 2577 ntAPPRIS P2 TSL 5 BASIC18.2■□□□□ 0.5
Col1a1P11087 B4galt3-201ENSMUST00000064272 1998 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Col1a1P11087 Shc1-202ENSMUST00000094378 2617 ntAPPRIS ALT1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Col1a1P11087 Cryba4-202ENSMUST00000112383 754 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Col1a1P11087 1700108N11Rik-201ENSMUST00000153051 917 ntTSL 2 BASIC18.2■□□□□ 0.5
Col1a1P11087 Mir8102-201ENSMUST00000184148 139 ntBASIC18.2■□□□□ 0.5
Col1a1P11087 Gm15406-202ENSMUST00000202229 767 ntTSL 2 BASIC18.2■□□□□ 0.5
Col1a1P11087 Apobec2-201ENSMUST00000046549 1218 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Col1a1P11087 S100a13-201ENSMUST00000048138 715 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Col1a1P11087 9530018F02Rik-201ENSMUST00000219513 2599 ntBASIC18.19■□□□□ 0.5
Col1a1P11087 Pdk3-201ENSMUST00000045748 2115 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Col1a1P11087 Evx2-201ENSMUST00000001867 4191 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
Col1a1P11087 Rragd-201ENSMUST00000029946 5055 ntTSL 5 BASIC18.19■□□□□ 0.5
Col1a1P11087 Fbxo8-202ENSMUST00000110322 1709 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Col1a1P11087 Srgn-204ENSMUST00000160987 1727 ntAPPRIS P1 TSL 3 BASIC18.19■□□□□ 0.5
Col1a1P11087 Kctd6-202ENSMUST00000170111 3052 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Col1a1P11087 Cuedc2-202ENSMUST00000167861 1941 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
Col1a1P11087 Pou2f3-rs1-201ENSMUST00000120271 1046 ntBASIC18.19■□□□□ 0.5
Col1a1P11087 Gm27164-201ENSMUST00000184359 723 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Col1a1P11087 Tex12-202ENSMUST00000217236 1003 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Col1a1P11087 Rbfox2-208ENSMUST00000227930 1218 ntBASIC18.19■□□□□ 0.5
Col1a1P11087 Rcn3-208ENSMUST00000211352 1453 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Col1a1P11087 Ppp2r2a-204ENSMUST00000225380 1988 ntBASIC18.19■□□□□ 0.5
Col1a1P11087 Zfp385b-202ENSMUST00000111829 2073 ntTSL 5 BASIC18.19■□□□□ 0.5
Col1a1P11087 Gm8237-201ENSMUST00000164484 2051 ntAPPRIS P5 TSL 5 BASIC18.19■□□□□ 0.5
Col1a1P11087 Fam83f-201ENSMUST00000023044 2988 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Col1a1P11087 Cul1-201ENSMUST00000031697 3161 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Col1a1P11087 Tmem269-202ENSMUST00000212054 1504 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Col1a1P11087 Fam172a-203ENSMUST00000163257 1436 ntAPPRIS P4 TSL 5 BASIC18.18■□□□□ 0.5
Col1a1P11087 Acbd3-201ENSMUST00000027780 3471 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Col1a1P11087 Rala-201ENSMUST00000009003 2688 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Col1a1P11087 Brpf3-201ENSMUST00000004985 5766 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Col1a1P11087 Klhdc4-201ENSMUST00000045884 2078 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Col1a1P11087 Gmcl1-201ENSMUST00000001185 2949 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Col1a1P11087 Crtac1-201ENSMUST00000048630 2616 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Col1a1P11087 Tbrg4-212ENSMUST00000189268 2347 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Col1a1P11087 Sept1-201ENSMUST00000106313 1285 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
Col1a1P11087 Clnkos-201ENSMUST00000114080 439 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Col1a1P11087 Ndufs6-203ENSMUST00000222930 512 ntTSL 3 BASIC18.18■□□□□ 0.5
Col1a1P11087 Gm33785-201ENSMUST00000222961 886 ntTSL 5 BASIC18.18■□□□□ 0.5
Col1a1P11087 Reep6-201ENSMUST00000040081 850 ntTSL 5 BASIC18.18■□□□□ 0.5
Col1a1P11087 Hes5-201ENSMUST00000049621 1273 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Col1a1P11087 Capn1-201ENSMUST00000025891 3100 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Col1a1P11087 Pqlc3-208ENSMUST00000222203 1706 ntTSL 5 BASIC18.18■□□□□ 0.5
Col1a1P11087 Sh3gl2-203ENSMUST00000107188 2286 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Col1a1P11087 Rsu1-202ENSMUST00000114791 1604 ntTSL 5 BASIC18.18■□□□□ 0.5
Col1a1P11087 Maml1-201ENSMUST00000059458 5528 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Col1a1P11087 Cr1l-208ENSMUST00000194111 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Col1a1P11087 Alx1-204ENSMUST00000217946 1542 ntTSL 5 BASIC18.18■□□□□ 0.5
Col1a1P11087 Nrxn2-205ENSMUST00000113462 6667 ntAPPRIS P4 TSL 1 (best) BASIC18.18■□□□□ 0.5
Col1a1P11087 Mettl7a1-201ENSMUST00000067752 1883 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Col1a1P11087 Hps6-201ENSMUST00000099393 2696 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
Col1a1P11087 Gm7901-201ENSMUST00000120430 1597 ntBASIC18.17■□□□□ 0.5
Col1a1P11087 Vim-201ENSMUST00000028062 2193 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Col1a1P11087 Nsmf-207ENSMUST00000116574 2863 ntTSL 5 BASIC18.17■□□□□ 0.5
Col1a1P11087 Pard6g-201ENSMUST00000070219 3143 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Col1a1P11087 Gm13453-201ENSMUST00000118708 357 ntBASIC18.17■□□□□ 0.5
Col1a1P11087 Nr2f1-202ENSMUST00000125176 841 ntTSL 5 BASIC18.17■□□□□ 0.5
Col1a1P11087 AI413582-204ENSMUST00000154473 836 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Col1a1P11087 1700028E10Rik-205ENSMUST00000202024 924 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Col1a1P11087 Bean1-204ENSMUST00000171018 3386 ntAPPRIS P4 TSL 1 (best) BASIC18.17■□□□□ 0.5
Col1a1P11087 Pimreg-201ENSMUST00000021164 1513 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Col1a1P11087 Atg4c-201ENSMUST00000030279 3178 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Col1a1P11087 Pcmt1-202ENSMUST00000159917 2491 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
Col1a1P11087 Miip-206ENSMUST00000172710 1769 ntAPPRIS P2 TSL 5 BASIC18.17■□□□□ 0.5
Col1a1P11087 1700022A21Rik-202ENSMUST00000182910 1448 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Col1a1P11087 Vav2-201ENSMUST00000056176 5221 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Col1a1P11087 Cadm1-204ENSMUST00000114548 4482 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Col1a1P11087 Zfp622-201ENSMUST00000061875 2802 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Col1a1P11087 Stra8-203ENSMUST00000114999 1455 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
Col1a1P11087 Anks6-202ENSMUST00000107747 3980 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Col1a1P11087 Gm7669-201ENSMUST00000210184 1603 ntBASIC18.16■□□□□ 0.5
Col1a1P11087 Atp10a-201ENSMUST00000168747 5419 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Col1a1P11087 Krt6a-201ENSMUST00000023788 2256 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Col1a1P11087 Rps10-ps2-201ENSMUST00000127484 496 ntBASIC18.16■□□□□ 0.5
Col1a1P11087 Gm11773-201ENSMUST00000138256 497 ntTSL 2 BASIC18.16■□□□□ 0.5
Retrieved 100 of 76,532 protein–RNA pairs in 45.7 ms