Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 Zbtb2-201ENSMUST00000100077 3086 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Hoxd3P09027 Ttc13-202ENSMUST00000117624 3096 ntTSL 5 BASIC12.19□□□□□ -0.46
Hoxd3P09027 Plekha4-202ENSMUST00000209517 2577 ntAPPRIS P2 TSL 5 BASIC12.19□□□□□ -0.46
Hoxd3P09027 Lhpp-201ENSMUST00000033241 1612 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Hoxd3P09027 Adamts17-201ENSMUST00000098382 6025 ntAPPRIS P2 TSL 5 BASIC12.19□□□□□ -0.46
Hoxd3P09027 Pigs-201ENSMUST00000048073 2501 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Hoxd3P09027 Mettl7a2-202ENSMUST00000176287 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC12.18□□□□□ -0.46
Hoxd3P09027 Mettl7a2-201ENSMUST00000088142 1800 ntAPPRIS P2 TSL 1 (best) BASIC12.18□□□□□ -0.46
Hoxd3P09027 Sox13-201ENSMUST00000094551 1842 ntAPPRIS P2 TSL 1 (best) BASIC12.18□□□□□ -0.46
Hoxd3P09027 Ppm1h-206ENSMUST00000161487 2931 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Hoxd3P09027 Tacc1-202ENSMUST00000084512 6471 ntAPPRIS ALT2 TSL 1 (best) BASIC12.18□□□□□ -0.46
Hoxd3P09027 Slc9a6-202ENSMUST00000114784 4449 ntTSL 5 BASIC12.18□□□□□ -0.46
Hoxd3P09027 Gm3928-201ENSMUST00000121141 1307 ntBASIC12.18□□□□□ -0.46
Hoxd3P09027 Kcnh1-201ENSMUST00000078470 7242 ntAPPRIS P3 TSL 1 (best) BASIC12.18□□□□□ -0.46
Hoxd3P09027 Msl1-201ENSMUST00000037915 4593 ntAPPRIS P2 TSL 1 (best) BASIC12.18□□□□□ -0.46
Hoxd3P09027 Sept11-205ENSMUST00000201700 3478 ntAPPRIS ALT1 TSL 2 BASIC12.18□□□□□ -0.46
Hoxd3P09027 Tmtc2-201ENSMUST00000061506 5629 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Hoxd3P09027 Smtn-201ENSMUST00000020718 1747 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Hoxd3P09027 Spock3-204ENSMUST00000119068 3201 ntAPPRIS P3 TSL 5 BASIC12.18□□□□□ -0.46
Hoxd3P09027 Cobl-203ENSMUST00000109651 5541 ntAPPRIS ALT2 TSL 1 (best) BASIC12.18□□□□□ -0.46
Hoxd3P09027 Gm7222-201ENSMUST00000117512 906 ntBASIC12.18□□□□□ -0.46
Hoxd3P09027 Gm12350-201ENSMUST00000121208 462 ntBASIC12.18□□□□□ -0.46
Hoxd3P09027 Sec22b-202ENSMUST00000122288 1177 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Hoxd3P09027 Cox6c-205ENSMUST00000156915 606 ntAPPRIS P1 TSL 5 BASIC12.18□□□□□ -0.46
Hoxd3P09027 Timm23-206ENSMUST00000170331 777 ntTSL 3 BASIC12.18□□□□□ -0.46
Hoxd3P09027 Gm20324-201ENSMUST00000186291 1118 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Hoxd3P09027 Gm6550-201ENSMUST00000187574 993 ntBASIC12.18□□□□□ -0.46
Hoxd3P09027 1700028B04Rik-202ENSMUST00000190841 971 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Hoxd3P09027 4930428E07Rik-201ENSMUST00000222132 920 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Hoxd3P09027 Il3ra-205ENSMUST00000224877 1128 ntAPPRIS ALT2 BASIC12.18□□□□□ -0.46
Hoxd3P09027 Lce1l-201ENSMUST00000054426 670 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Hoxd3P09027 Wnk2-207ENSMUST00000159559 6584 ntAPPRIS ALT2 TSL 5 BASIC12.18□□□□□ -0.46
Hoxd3P09027 Gm26613-201ENSMUST00000180919 1457 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Hoxd3P09027 Naa15-201ENSMUST00000029303 6090 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Hoxd3P09027 Pde8b-214ENSMUST00000172104 2493 ntAPPRIS ALT2 TSL 5 BASIC12.18□□□□□ -0.46
Hoxd3P09027 Usp53-201ENSMUST00000090379 6185 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Hoxd3P09027 Atp1a1-201ENSMUST00000036493 3679 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Hoxd3P09027 Gm8784-201ENSMUST00000222096 1435 ntBASIC12.18□□□□□ -0.46
Hoxd3P09027 Bpifb5-201ENSMUST00000045959 1637 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Hoxd3P09027 Bpifb3-201ENSMUST00000088950 1821 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Hoxd3P09027 Usp43-202ENSMUST00000108677 4447 ntAPPRIS ALT2 TSL 1 (best) BASIC12.18□□□□□ -0.46
Hoxd3P09027 Kif7-201ENSMUST00000059836 4521 ntAPPRIS P3 TSL 1 (best) BASIC12.18□□□□□ -0.46
Hoxd3P09027 Rab34-201ENSMUST00000002128 1368 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Hoxd3P09027 4930474N05Rik-203ENSMUST00000226305 2313 ntAPPRIS P1 BASIC12.17□□□□□ -0.46
Hoxd3P09027 Tmem229b-206ENSMUST00000174697 3697 ntAPPRIS P1 TSL 5 BASIC12.17□□□□□ -0.46
Hoxd3P09027 Ripk1-201ENSMUST00000021844 3266 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Hoxd3P09027 9130019P16Rik-202ENSMUST00000145111 4486 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Hoxd3P09027 Gmppa-202ENSMUST00000113584 1692 ntAPPRIS P1 TSL 5 BASIC12.17□□□□□ -0.46
Hoxd3P09027 Lias-202ENSMUST00000122026 1668 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Hoxd3P09027 Lurap1-201ENSMUST00000030469 5742 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Hoxd3P09027 Zpbp-201ENSMUST00000020413 4248 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Hoxd3P09027 Ube2j2-201ENSMUST00000024056 3483 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Hoxd3P09027 Dnajc2-202ENSMUST00000115192 1132 ntTSL 2 BASIC12.17□□□□□ -0.46
Hoxd3P09027 Sssca1-203ENSMUST00000159693 705 ntTSL 3 BASIC12.17□□□□□ -0.46
Hoxd3P09027 Gm6257-201ENSMUST00000163864 910 ntBASIC12.17□□□□□ -0.46
Hoxd3P09027 Csrp3-202ENSMUST00000167786 899 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Hoxd3P09027 1700039E22Rik-201ENSMUST00000174082 770 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Hoxd3P09027 Rbm14-203ENSMUST00000180008 370 ntTSL 5 BASIC12.17□□□□□ -0.46
Hoxd3P09027 Pantr2-201ENSMUST00000180589 463 ntTSL 3 BASIC12.17□□□□□ -0.46
Hoxd3P09027 Urah-204ENSMUST00000185612 716 ntAPPRIS P3 TSL 3 BASIC12.17□□□□□ -0.46
Hoxd3P09027 AW822252-206ENSMUST00000208904 237 ntBASIC12.17□□□□□ -0.46
Hoxd3P09027 Urah-207ENSMUST00000211372 688 ntAPPRIS P3 TSL 2 BASIC12.17□□□□□ -0.46
Hoxd3P09027 Cfd-202ENSMUST00000217837 871 ntAPPRIS ALT2 TSL 1 (best) BASIC12.17□□□□□ -0.46
Hoxd3P09027 Urah-201ENSMUST00000026554 890 ntAPPRIS P3 TSL 1 (best) BASIC12.17□□□□□ -0.46
Hoxd3P09027 Izumo1r-201ENSMUST00000034409 1291 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Hoxd3P09027 Lhb-201ENSMUST00000072453 678 ntAPPRIS P1 TSL 2 BASIC12.17□□□□□ -0.46
Hoxd3P09027 Rps6ka1-201ENSMUST00000003741 3085 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Hoxd3P09027 Golim4-201ENSMUST00000038563 5546 ntAPPRIS P3 TSL 1 (best) BASIC12.17□□□□□ -0.46
Hoxd3P09027 Mapk7-201ENSMUST00000079080 3019 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Hoxd3P09027 Zfp862-ps-203ENSMUST00000203848 1776 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Hoxd3P09027 Pcsk6-201ENSMUST00000055576 4405 ntAPPRIS P3 TSL 5 BASIC12.17□□□□□ -0.46
Hoxd3P09027 Bicdl1-204ENSMUST00000121746 1568 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Hoxd3P09027 Tstd3-201ENSMUST00000029915 1588 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Hoxd3P09027 Gipc2-201ENSMUST00000046614 1596 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Hoxd3P09027 B230219D22Rik-201ENSMUST00000057844 4652 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Hoxd3P09027 Trappc11-202ENSMUST00000120987 2060 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Hoxd3P09027 Pde8b-202ENSMUST00000067082 2598 ntAPPRIS ALT2 TSL 5 BASIC12.17□□□□□ -0.46
Hoxd3P09027 Klhl40-201ENSMUST00000098272 2370 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Hoxd3P09027 Nepro-201ENSMUST00000048788 2866 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Hoxd3P09027 Traf2-202ENSMUST00000114234 2151 ntAPPRIS ALT2 TSL 5 BASIC12.16□□□□□ -0.46
Hoxd3P09027 Sfmbt1-201ENSMUST00000054230 7837 ntAPPRIS P1 TSL 5 BASIC12.16□□□□□ -0.46
Hoxd3P09027 Dab2ip-202ENSMUST00000091010 6455 ntAPPRIS ALT2 TSL 1 (best) BASIC12.16□□□□□ -0.46
Hoxd3P09027 Gm26669-201ENSMUST00000181323 1808 ntTSL 5 BASIC12.16□□□□□ -0.46
Hoxd3P09027 Cd2bp2-201ENSMUST00000035771 1309 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Hoxd3P09027 Lcat-201ENSMUST00000038896 1342 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Hoxd3P09027 Alx4-201ENSMUST00000042078 5253 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Hoxd3P09027 Gm26608-201ENSMUST00000180740 1954 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Hoxd3P09027 Sec24a-204ENSMUST00000109097 6581 ntAPPRIS P3 TSL 1 (best) BASIC12.16□□□□□ -0.46
Hoxd3P09027 Rcc2-201ENSMUST00000038893 3767 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Hoxd3P09027 Acot4-201ENSMUST00000021652 6203 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Hoxd3P09027 2210016F16Rik-201ENSMUST00000022032 3051 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Hoxd3P09027 Bcam-201ENSMUST00000003061 2429 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Hoxd3P09027 Fbxl3-206ENSMUST00000145693 3352 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Hoxd3P09027 Gm17193-201ENSMUST00000116345 691 ntTSL 5 BASIC12.16□□□□□ -0.46
Hoxd3P09027 Uqcc2-203ENSMUST00000119227 452 ntTSL 3 BASIC12.16□□□□□ -0.46
Hoxd3P09027 Cdpf1-203ENSMUST00000134631 786 ntAPPRIS P1 TSL 5 BASIC12.16□□□□□ -0.46
Hoxd3P09027 BC051226-201ENSMUST00000172526 837 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Hoxd3P09027 Gm26695-201ENSMUST00000180920 1251 ntTSL 5 BASIC12.16□□□□□ -0.46
Hoxd3P09027 Gm43661-201ENSMUST00000199099 687 ntTSL 3 BASIC12.16□□□□□ -0.46
Hoxd3P09027 Gm38575-201ENSMUST00000213881 652 ntTSL 2 BASIC12.16□□□□□ -0.46
Retrieved 100 of 76,532 protein–RNA pairs in 37.1 ms