Protein–RNA interactions for Protein: O88696

Clpp, ATP-dependent Clp protease proteolytic subunit, mitochondrial, mousemouse

Predictions only

Length 272 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ClppO88696 Gk-201ENSMUST00000026039 4340 ntAPPRIS ALT1 TSL 1 (best) BASIC15.28■□□□□ 0.04
ClppO88696 Apba3-201ENSMUST00000057798 2106 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
ClppO88696 Dbx1-201ENSMUST00000032717 2091 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
ClppO88696 Snupn-201ENSMUST00000068856 1391 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
ClppO88696 Alcam-201ENSMUST00000023312 6036 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
ClppO88696 Acp7-201ENSMUST00000040112 1978 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
ClppO88696 Kbtbd2-201ENSMUST00000114321 3868 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
ClppO88696 AK157302-201ENSMUST00000104942 1924 ntAPPRIS P1 BASIC15.28■□□□□ 0.04
ClppO88696 Fam107b-203ENSMUST00000115053 688 ntAPPRIS P1 TSL 3 BASIC15.28■□□□□ 0.04
ClppO88696 Gm21887-203ENSMUST00000180251 531 ntAPPRIS P5 TSL 5 BASIC15.28■□□□□ 0.04
ClppO88696 A830052D11Rik-201ENSMUST00000181729 1130 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
ClppO88696 3830406C13Rik-207ENSMUST00000223927 1010 ntBASIC15.28■□□□□ 0.04
ClppO88696 Gm10190-201ENSMUST00000086549 324 ntAPPRIS P1 BASIC15.28■□□□□ 0.04
ClppO88696 Hnrnpl-202ENSMUST00000172529 1898 ntTSL 5 BASIC15.28■□□□□ 0.04
ClppO88696 Lrrc14-202ENSMUST00000127208 4849 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
ClppO88696 Mtcl1-201ENSMUST00000086693 7221 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
ClppO88696 Wt1-201ENSMUST00000111098 2395 ntTSL 5 BASIC15.28■□□□□ 0.04
ClppO88696 E330011M16Rik-201ENSMUST00000193614 1794 ntBASIC15.28■□□□□ 0.04
ClppO88696 Txnrd2-215ENSMUST00000206151 2874 ntAPPRIS P2 TSL 5 BASIC15.28■□□□□ 0.04
ClppO88696 Rmdn1-201ENSMUST00000029888 1734 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
ClppO88696 Cmtm3-201ENSMUST00000034343 1616 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
ClppO88696 Rnf38-203ENSMUST00000102934 5240 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
ClppO88696 Shcbp1l-201ENSMUST00000042373 2092 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
ClppO88696 Tbc1d9-201ENSMUST00000034145 4631 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
ClppO88696 Nfkb1-206ENSMUST00000164430 3007 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
ClppO88696 Bcor-206ENSMUST00000124033 6785 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
ClppO88696 Gjd2-201ENSMUST00000090275 2879 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
ClppO88696 Flot1-209ENSMUST00000174080 1383 ntTSL 5 BASIC15.27■□□□□ 0.04
ClppO88696 Rnf220-203ENSMUST00000102690 1842 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
ClppO88696 Acd-201ENSMUST00000042608 3154 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
ClppO88696 AU022751-202ENSMUST00000117544 2201 ntAPPRIS P4 BASIC15.27■□□□□ 0.04
ClppO88696 Mindy4-203ENSMUST00000204842 2211 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
ClppO88696 Btbd11-203ENSMUST00000105307 5788 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
ClppO88696 Afg3l2-201ENSMUST00000025408 3085 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
ClppO88696 Gypc-203ENSMUST00000174459 2180 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
ClppO88696 Scrt1-202ENSMUST00000164703 3478 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.04
ClppO88696 Mff-211ENSMUST00000161648 1715 ntTSL 5 BASIC15.27■□□□□ 0.04
ClppO88696 2810030D12Rik-203ENSMUST00000190461 1039 ntBASIC15.27■□□□□ 0.04
ClppO88696 Dnmt3a-ps1-201ENSMUST00000192011 1271 ntBASIC15.27■□□□□ 0.04
ClppO88696 Ogfod2-207ENSMUST00000196627 532 ntTSL 3 BASIC15.27■□□□□ 0.04
ClppO88696 Gm18206-201ENSMUST00000207027 926 ntBASIC15.27■□□□□ 0.04
ClppO88696 AW822252-206ENSMUST00000208904 237 ntBASIC15.27■□□□□ 0.04
ClppO88696 AC148328.1-201ENSMUST00000216448 920 ntTSL 5 BASIC15.27■□□□□ 0.04
ClppO88696 Coq6-201ENSMUST00000021661 1602 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.03
ClppO88696 Spag1-202ENSMUST00000171205 3219 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
ClppO88696 Sfrp1-201ENSMUST00000033952 4372 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
ClppO88696 Slc39a1-201ENSMUST00000015467 2364 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
ClppO88696 Cask-203ENSMUST00000115436 8260 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.03
ClppO88696 Dennd1a-201ENSMUST00000102787 4342 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
ClppO88696 Klc4-201ENSMUST00000003642 2322 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
ClppO88696 Grik5-201ENSMUST00000003468 3763 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
ClppO88696 Il10rb-201ENSMUST00000023691 1850 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
ClppO88696 Cyp4f37-201ENSMUST00000077639 2642 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
ClppO88696 Cadps2-205ENSMUST00000115358 4848 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.03
ClppO88696 Dnajc6-202ENSMUST00000094953 5322 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
ClppO88696 Tprn-201ENSMUST00000114336 2787 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
ClppO88696 Slc27a1-201ENSMUST00000034267 2795 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
ClppO88696 Gm44616-201ENSMUST00000206417 1732 ntBASIC15.26■□□□□ 0.03
ClppO88696 Tmprss5-201ENSMUST00000070390 2047 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
ClppO88696 Pick1-206ENSMUST00000166155 1699 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
ClppO88696 Itgb7-201ENSMUST00000001327 2674 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
ClppO88696 Saysd1-201ENSMUST00000059666 2315 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
ClppO88696 Sema3b-204ENSMUST00000102531 2958 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
ClppO88696 Trpc1-204ENSMUST00000189137 4559 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
ClppO88696 Gm8839-201ENSMUST00000121279 1645 ntBASIC15.26■□□□□ 0.03
ClppO88696 Rplp2-203ENSMUST00000106004 421 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
ClppO88696 B9d2-201ENSMUST00000108403 1021 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
ClppO88696 H2-Bl-201ENSMUST00000173080 1138 ntAPPRIS P5 TSL 1 (best) BASIC15.26■□□□□ 0.03
ClppO88696 Gm4535-201ENSMUST00000182274 558 ntBASIC15.26■□□□□ 0.03
ClppO88696 H2-Bl-204ENSMUST00000184502 862 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
ClppO88696 AC171004.1-201ENSMUST00000221723 664 ntTSL 3 BASIC15.26■□□□□ 0.03
ClppO88696 Mrpl17-201ENSMUST00000033170 1028 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
ClppO88696 Rangrf-201ENSMUST00000038644 820 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
ClppO88696 Tbcc-201ENSMUST00000040434 1164 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
ClppO88696 Mrpl34-201ENSMUST00000048914 607 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
ClppO88696 Tmem242-201ENSMUST00000005053 948 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
ClppO88696 Gm10355-201ENSMUST00000097146 517 ntBASIC15.26■□□□□ 0.03
ClppO88696 Polr3e-203ENSMUST00000207481 2545 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
ClppO88696 Asph-210ENSMUST00000108337 2836 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
ClppO88696 Tedc2-201ENSMUST00000024930 2166 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
ClppO88696 Rfc5-201ENSMUST00000086461 2796 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
ClppO88696 Rtn1-201ENSMUST00000021497 1544 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
ClppO88696 Cdc37l1-204ENSMUST00000224511 2944 ntAPPRIS ALT2 BASIC15.26■□□□□ 0.03
ClppO88696 Rffl-206ENSMUST00000108173 3489 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
ClppO88696 Cnot11-203ENSMUST00000161515 3482 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
ClppO88696 Spdef-205ENSMUST00000167489 1708 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
ClppO88696 Cux1-206ENSMUST00000176172 4882 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
ClppO88696 Stxbp6-201ENSMUST00000053768 4553 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
ClppO88696 Gm11841-201ENSMUST00000117060 1963 ntBASIC15.25■□□□□ 0.03
ClppO88696 9630013D21Rik-204ENSMUST00000156790 3096 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
ClppO88696 Rexo1-201ENSMUST00000057910 5250 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
ClppO88696 Pgc-201ENSMUST00000024782 1388 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
ClppO88696 Fa2h-201ENSMUST00000038475 2492 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
ClppO88696 1700066M21Rik-201ENSMUST00000042734 3008 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
ClppO88696 Mzf1-202ENSMUST00000182087 2197 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
ClppO88696 Nhs-201ENSMUST00000081569 4881 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
ClppO88696 Blzf1-203ENSMUST00000120447 2430 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
ClppO88696 Hist1h1c-201ENSMUST00000040914 1560 ntAPPRIS P1 BASIC15.25■□□□□ 0.03
ClppO88696 Nosip-201ENSMUST00000003513 1814 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
ClppO88696 Hira-202ENSMUST00000120532 2063 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Retrieved 100 of 76,532 protein–RNA pairs in 22.5 ms