Protein–RNA interactions for Protein: O54990

Prom1, Prominin-1, mousemouse

Predictions only

Length 867 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prom1O54990 Msx2-201ENSMUST00000021922 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Prom1O54990 Dock9-202ENSMUST00000100299 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Prom1O54990 Rabl6-201ENSMUST00000058137 3230 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Prom1O54990 Psmb10-201ENSMUST00000034369 1311 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Prom1O54990 Dhx32-201ENSMUST00000033290 2955 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Prom1O54990 Hsd17b7-202ENSMUST00000111353 1446 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Prom1O54990 Rps6kb2-202ENSMUST00000118483 1409 ntTSL 5 BASIC17.22■□□□□ 0.35
Prom1O54990 Hmgcl-201ENSMUST00000030432 1418 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Prom1O54990 Zfp821-203ENSMUST00000212000 2081 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Prom1O54990 Trmu-201ENSMUST00000023019 1526 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Prom1O54990 Taf6l-212ENSMUST00000177216 2167 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
Prom1O54990 Agfg1-206ENSMUST00000189220 8044 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
Prom1O54990 Atp6v0d1-201ENSMUST00000013304 1629 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Prom1O54990 Il6st-206ENSMUST00000183886 3004 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Prom1O54990 Gps1-208ENSMUST00000208737 1843 ntAPPRIS ALT1 TSL 5 BASIC17.22■□□□□ 0.35
Prom1O54990 Gm13616-201ENSMUST00000120600 222 ntBASIC17.22■□□□□ 0.35
Prom1O54990 Slc39a1-ps-201ENSMUST00000120862 969 ntBASIC17.22■□□□□ 0.35
Prom1O54990 Lrrc3c-201ENSMUST00000142268 902 ntAPPRIS P1 TSL 3 BASIC17.22■□□□□ 0.35
Prom1O54990 Erdr1-202ENSMUST00000177671 708 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
Prom1O54990 Cldn25-ps-201ENSMUST00000197641 693 ntBASIC17.22■□□□□ 0.35
Prom1O54990 Arf5-201ENSMUST00000020717 1116 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Prom1O54990 March3-201ENSMUST00000035278 860 ntAPPRIS P1 TSL 3 BASIC17.22■□□□□ 0.35
Prom1O54990 Sarm1-202ENSMUST00000108287 4868 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Prom1O54990 Vldlr-202ENSMUST00000047645 3260 ntTSL 5 BASIC17.22■□□□□ 0.35
Prom1O54990 Arrdc1-202ENSMUST00000102935 1574 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
Prom1O54990 Dlgap3-202ENSMUST00000106092 2901 ntTSL 5 BASIC17.22■□□□□ 0.35
Prom1O54990 Map6-207ENSMUST00000208924 2906 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
Prom1O54990 Rint1-205ENSMUST00000120869 1886 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Prom1O54990 Lcorl-202ENSMUST00000045586 5708 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Prom1O54990 Taok3-202ENSMUST00000111975 2172 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Prom1O54990 Nek9-201ENSMUST00000040992 5386 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Prom1O54990 Myh7b-201ENSMUST00000092995 6163 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
Prom1O54990 Slc9a6-202ENSMUST00000114784 4449 ntTSL 5 BASIC17.22■□□□□ 0.35
Prom1O54990 Cd2bp2-201ENSMUST00000035771 1309 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Prom1O54990 Klrg1-201ENSMUST00000032207 1414 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Prom1O54990 Tmem132e-201ENSMUST00000054245 4386 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
Prom1O54990 4933426K07Rik-201ENSMUST00000143009 1548 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Prom1O54990 Gm29361-201ENSMUST00000183323 2000 ntBASIC17.21■□□□□ 0.35
Prom1O54990 Mob2-206ENSMUST00000211206 2140 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Prom1O54990 Ddx49-201ENSMUST00000008004 2137 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Prom1O54990 Tmem50b-201ENSMUST00000023686 2347 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Prom1O54990 Gprc5b-201ENSMUST00000008878 4518 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
Prom1O54990 Lhfpl4-201ENSMUST00000162280 4762 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Prom1O54990 Snx11-202ENSMUST00000107661 2197 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Prom1O54990 Chst3-203ENSMUST00000167915 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
Prom1O54990 Bend4-204ENSMUST00000201972 8268 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
Prom1O54990 Ttc9c-201ENSMUST00000088092 1585 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Prom1O54990 Mettl27-203ENSMUST00000111218 1387 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Prom1O54990 Olfr55-201ENSMUST00000112168 948 ntAPPRIS P1 BASIC17.21■□□□□ 0.35
Prom1O54990 Bad-203ENSMUST00000113426 740 ntTSL 5 BASIC17.21■□□□□ 0.35
Prom1O54990 Adprm-201ENSMUST00000116363 1283 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Prom1O54990 Mir1895-201ENSMUST00000122615 79 ntBASIC17.21■□□□□ 0.35
Prom1O54990 Grip1os3-202ENSMUST00000146294 957 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Prom1O54990 AC159114.1-201ENSMUST00000220349 266 ntBASIC17.21■□□□□ 0.35
Prom1O54990 Rnf138rt1-201ENSMUST00000059320 1191 ntAPPRIS P1 BASIC17.21■□□□□ 0.35
Prom1O54990 Gm9945-201ENSMUST00000067523 932 ntAPPRIS P1 BASIC17.21■□□□□ 0.35
Prom1O54990 Kcnd3-202ENSMUST00000098761 7169 ntAPPRIS ALT1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Prom1O54990 Arhgap39-202ENSMUST00000077821 4494 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.34
Prom1O54990 Pola2-202ENSMUST00000165143 2397 ntTSL 1 (best) BASIC17.21■□□□□ 0.34
Prom1O54990 Snx16-201ENSMUST00000029047 2288 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.34
Prom1O54990 Gm5069-201ENSMUST00000050581 1328 ntTSL 1 (best) BASIC17.21■□□□□ 0.34
Prom1O54990 4933412A08Rik-201ENSMUST00000061046 1343 ntBASIC17.21■□□□□ 0.34
Prom1O54990 Ormdl3-201ENSMUST00000052919 2184 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
Prom1O54990 Sh2b1-201ENSMUST00000032978 3393 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
Prom1O54990 Rabggta-203ENSMUST00000169237 2547 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Prom1O54990 Pnliprp2-201ENSMUST00000026081 1567 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Prom1O54990 Wipf1-201ENSMUST00000094681 4728 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Prom1O54990 Arl4c-202ENSMUST00000159814 3997 ntAPPRIS P1 BASIC17.2■□□□□ 0.34
Prom1O54990 Snap91-202ENSMUST00000074468 4336 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
Prom1O54990 Rnf145-201ENSMUST00000019333 3570 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Prom1O54990 Gm15920-201ENSMUST00000118998 402 ntBASIC17.2■□□□□ 0.34
Prom1O54990 Haghl-206ENSMUST00000138759 1074 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Prom1O54990 Gm7286-201ENSMUST00000182691 1007 ntBASIC17.2■□□□□ 0.34
Prom1O54990 Cdipt-205ENSMUST00000206450 951 ntTSL 5 BASIC17.2■□□□□ 0.34
Prom1O54990 Pabpn1l-202ENSMUST00000212966 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Prom1O54990 9430081H08Rik-201ENSMUST00000217460 818 ntBASIC17.2■□□□□ 0.34
Prom1O54990 Thap2-203ENSMUST00000218989 527 ntBASIC17.2■□□□□ 0.34
Prom1O54990 Calcb-201ENSMUST00000032902 962 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Prom1O54990 Gdpd3-201ENSMUST00000032944 1148 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Prom1O54990 H2-K1-202ENSMUST00000087189 579 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Prom1O54990 Pcna-ps2-201ENSMUST00000088040 1257 ntAPPRIS P1 BASIC17.2■□□□□ 0.34
Prom1O54990 Krt73-201ENSMUST00000063292 2165 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Prom1O54990 Nodal-201ENSMUST00000049339 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Prom1O54990 Cygb-201ENSMUST00000021166 2331 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Prom1O54990 Brpf1-202ENSMUST00000113119 4826 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Prom1O54990 Ppil1-201ENSMUST00000024802 1434 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Prom1O54990 Epm2a-201ENSMUST00000069106 3287 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Prom1O54990 Xrcc1-205ENSMUST00000205573 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Prom1O54990 Gm44729-201ENSMUST00000206759 2052 ntBASIC17.19■□□□□ 0.34
Prom1O54990 Ggnbp2-203ENSMUST00000108081 3034 ntAPPRIS P2 TSL 5 BASIC17.19■□□□□ 0.34
Prom1O54990 Ccbe1-202ENSMUST00000130300 1631 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Prom1O54990 Crk-203ENSMUST00000108425 4290 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Prom1O54990 Hist1h4k-201ENSMUST00000102983 312 ntAPPRIS P1 BASIC17.19■□□□□ 0.34
Prom1O54990 Tmsb10-203ENSMUST00000114050 570 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Prom1O54990 Arid2-202ENSMUST00000134985 809 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Prom1O54990 Gm45612-201ENSMUST00000211320 160 ntBASIC17.19■□□□□ 0.34
Prom1O54990 Slc2a8-201ENSMUST00000028129 2108 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Prom1O54990 Cfdp1-201ENSMUST00000034432 1178 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Prom1O54990 Rnaseh2a-201ENSMUST00000065049 1006 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Prom1O54990 Nrn1-204ENSMUST00000224323 1779 ntBASIC17.19■□□□□ 0.34
Retrieved 100 of 76,532 protein–RNA pairs in 34.4 ms