Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 Gm2694-204ENSMUST00000181898 1303 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Prpf40aQ9R1C7 Gm5421-201ENSMUST00000181698 2354 ntBASIC17.29■□□□□ 0.36
Prpf40aQ9R1C7 Tmem183a-201ENSMUST00000049470 3149 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Prpf40aQ9R1C7 Klf5-201ENSMUST00000005279 3352 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Prpf40aQ9R1C7 Dctd-203ENSMUST00000170263 2096 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Prpf40aQ9R1C7 Ythdf3-202ENSMUST00000108346 4929 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Prpf40aQ9R1C7 Rnf145-201ENSMUST00000019333 3570 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Prpf40aQ9R1C7 Alkal1-201ENSMUST00000133144 971 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Prpf40aQ9R1C7 Flg-202ENSMUST00000178008 768 ntAPPRIS ALT2 BASIC17.29■□□□□ 0.36
Prpf40aQ9R1C7 Flg-205ENSMUST00000179250 765 ntAPPRIS ALT2 BASIC17.29■□□□□ 0.36
Prpf40aQ9R1C7 Gm28051-201ENSMUST00000179306 445 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
Prpf40aQ9R1C7 Flg-206ENSMUST00000179477 768 ntAPPRIS ALT2 BASIC17.29■□□□□ 0.36
Prpf40aQ9R1C7 Ank1-201ENSMUST00000033947 1030 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Prpf40aQ9R1C7 Dnajb8-201ENSMUST00000061866 990 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
Prpf40aQ9R1C7 Asb2-204ENSMUST00000149431 2283 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Prpf40aQ9R1C7 Ttc13-203ENSMUST00000118134 3277 ntTSL 5 BASIC17.29■□□□□ 0.36
Prpf40aQ9R1C7 Nrg1-218ENSMUST00000209107 2972 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
Prpf40aQ9R1C7 Serpine2-201ENSMUST00000027467 2210 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Prpf40aQ9R1C7 Prdm5-201ENSMUST00000031973 1488 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Prpf40aQ9R1C7 Rundc3b-201ENSMUST00000047485 3677 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
Prpf40aQ9R1C7 Kifc3-203ENSMUST00000169748 3384 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Prpf40aQ9R1C7 Tmem241-205ENSMUST00000209859 1426 ntAPPRIS P4 TSL 1 (best) BASIC17.29■□□□□ 0.36
Prpf40aQ9R1C7 Zfp36l3-201ENSMUST00000071711 2347 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
Prpf40aQ9R1C7 Trim39-203ENSMUST00000113706 3204 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Prpf40aQ9R1C7 Mir124-2hg-202ENSMUST00000186746 1368 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Prpf40aQ9R1C7 Rab23-201ENSMUST00000088287 4322 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Prpf40aQ9R1C7 Pnpla2-202ENSMUST00000064151 1799 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
Prpf40aQ9R1C7 Kcnj6-202ENSMUST00000099508 3086 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Prpf40aQ9R1C7 Pex5l-206ENSMUST00000108226 2632 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Prpf40aQ9R1C7 Kmt5b-208ENSMUST00000113977 6002 ntAPPRIS P3 TSL 5 BASIC17.28■□□□□ 0.36
Prpf40aQ9R1C7 Slc9a3r1-201ENSMUST00000021077 1925 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Prpf40aQ9R1C7 Gm12216-201ENSMUST00000117316 1152 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Prpf40aQ9R1C7 Gm9103-201ENSMUST00000119371 405 ntBASIC17.28■□□□□ 0.36
Prpf40aQ9R1C7 Gm26620-201ENSMUST00000180542 817 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
Prpf40aQ9R1C7 Gm10459-201ENSMUST00000202708 1155 ntBASIC17.28■□□□□ 0.36
Prpf40aQ9R1C7 Piga-208ENSMUST00000208697 947 ntTSL 5 BASIC17.28■□□□□ 0.36
Prpf40aQ9R1C7 AC108846.1-201ENSMUST00000214531 513 ntBASIC17.28■□□□□ 0.36
Prpf40aQ9R1C7 3830406C13Rik-207ENSMUST00000223927 1010 ntBASIC17.28■□□□□ 0.36
Prpf40aQ9R1C7 Xpo1-202ENSMUST00000102869 6004 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Prpf40aQ9R1C7 Kat5-201ENSMUST00000113641 2008 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Prpf40aQ9R1C7 Rnf13-205ENSMUST00000198214 2027 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Prpf40aQ9R1C7 Zbtb48-201ENSMUST00000066715 2218 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Prpf40aQ9R1C7 Snx8-201ENSMUST00000031539 2627 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Prpf40aQ9R1C7 Rsrc1-205ENSMUST00000161726 3213 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Prpf40aQ9R1C7 Cog8-201ENSMUST00000034391 2954 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Prpf40aQ9R1C7 Lrp8os3-201ENSMUST00000125464 1770 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Prpf40aQ9R1C7 Cpeb2-205ENSMUST00000169035 7050 ntAPPRIS P2 TSL 5 BASIC17.28■□□□□ 0.36
Prpf40aQ9R1C7 Wwox-207ENSMUST00000160862 1715 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Prpf40aQ9R1C7 Ndufv2-203ENSMUST00000143987 1540 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Prpf40aQ9R1C7 Lgr6-202ENSMUST00000137968 2820 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Prpf40aQ9R1C7 Gk5-201ENSMUST00000085217 2815 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
Prpf40aQ9R1C7 Rnf139-201ENSMUST00000036904 4348 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Prpf40aQ9R1C7 Slc24a4-202ENSMUST00000159329 4465 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
Prpf40aQ9R1C7 Gm26578-201ENSMUST00000181702 4611 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Prpf40aQ9R1C7 Fam83g-202ENSMUST00000093019 4778 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Prpf40aQ9R1C7 Dok1-201ENSMUST00000089651 1807 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Prpf40aQ9R1C7 Ccl27a-202ENSMUST00000108032 350 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Prpf40aQ9R1C7 Pld6-202ENSMUST00000125307 948 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Prpf40aQ9R1C7 Gm26787-201ENSMUST00000180474 608 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Prpf40aQ9R1C7 Gm44264-201ENSMUST00000203049 742 ntTSL 3 BASIC17.27■□□□□ 0.36
Prpf40aQ9R1C7 Cldn19-201ENSMUST00000084309 924 ntAPPRIS P4 TSL 1 (best) BASIC17.27■□□□□ 0.36
Prpf40aQ9R1C7 Foxc2-201ENSMUST00000054691 2725 ntAPPRIS P1 BASIC17.27■□□□□ 0.36
Prpf40aQ9R1C7 Cog8-202ENSMUST00000095517 4476 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Prpf40aQ9R1C7 Zfp691-201ENSMUST00000052715 2341 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Prpf40aQ9R1C7 Uvrag-201ENSMUST00000037968 5157 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Prpf40aQ9R1C7 Trpc3-201ENSMUST00000029271 3694 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Prpf40aQ9R1C7 Nell1-201ENSMUST00000081872 6617 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Prpf40aQ9R1C7 Pxn-201ENSMUST00000067268 3706 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
Prpf40aQ9R1C7 Col13a1-203ENSMUST00000105452 3037 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
Prpf40aQ9R1C7 Tnfrsf1a-201ENSMUST00000032491 2156 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Prpf40aQ9R1C7 Chst14-202ENSMUST00000110837 1991 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Prpf40aQ9R1C7 Rbck1-201ENSMUST00000028964 2252 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Prpf40aQ9R1C7 Tmem65-201ENSMUST00000072113 3747 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Prpf40aQ9R1C7 Mlec-201ENSMUST00000112121 5955 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Prpf40aQ9R1C7 9530082P21Rik-202ENSMUST00000181291 1798 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Prpf40aQ9R1C7 Sntb2-201ENSMUST00000047425 3225 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Prpf40aQ9R1C7 Dynlt1c-201ENSMUST00000092966 2589 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Prpf40aQ9R1C7 Eda-206ENSMUST00000113779 4955 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
Prpf40aQ9R1C7 Sh2d4a-201ENSMUST00000066594 2718 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Prpf40aQ9R1C7 Cyp21a1-201ENSMUST00000025223 2058 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Prpf40aQ9R1C7 Nat9-203ENSMUST00000103040 1204 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Prpf40aQ9R1C7 Nat9-204ENSMUST00000103041 953 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
Prpf40aQ9R1C7 Gm12895-201ENSMUST00000122214 226 ntBASIC17.26■□□□□ 0.35
Prpf40aQ9R1C7 1500009L16Rik-201ENSMUST00000150459 1194 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Prpf40aQ9R1C7 Chd3os-202ENSMUST00000151617 389 ntTSL 3 BASIC17.26■□□□□ 0.35
Prpf40aQ9R1C7 Icam4-202ENSMUST00000215077 1028 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Prpf40aQ9R1C7 Lurap1-201ENSMUST00000030469 5742 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Prpf40aQ9R1C7 Mindy4-203ENSMUST00000204842 2211 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Prpf40aQ9R1C7 Fnbp1-208ENSMUST00000113560 4726 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Prpf40aQ9R1C7 Ip6k2-206ENSMUST00000193560 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Prpf40aQ9R1C7 Gata5-201ENSMUST00000015771 3277 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Prpf40aQ9R1C7 Med15-202ENSMUST00000080936 3263 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Prpf40aQ9R1C7 Gm9867-201ENSMUST00000192212 2647 ntBASIC17.26■□□□□ 0.35
Prpf40aQ9R1C7 Tmem201-201ENSMUST00000054459 4631 ntAPPRIS ALT2 TSL 2 BASIC17.26■□□□□ 0.35
Prpf40aQ9R1C7 Dlgap3-202ENSMUST00000106092 2901 ntTSL 5 BASIC17.26■□□□□ 0.35
Prpf40aQ9R1C7 Kit-204ENSMUST00000144270 5241 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Prpf40aQ9R1C7 Apba3-211ENSMUST00000220297 2268 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
Prpf40aQ9R1C7 Ankle2-206ENSMUST00000197188 4077 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
Prpf40aQ9R1C7 Fam214b-204ENSMUST00000107958 3280 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Prpf40aQ9R1C7 Golph3-201ENSMUST00000059680 2652 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Retrieved 100 of 76,532 protein–RNA pairs in 26.7 ms