Protein–RNA interactions for Protein: Q9ER60

Scn4a, Sodium channel protein type 4 subunit alpha, mousemouse

Predictions only

Length 1,841 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn4aQ9ER60 Cfap20-208ENSMUST00000213086 2544 ntTSL 2 BASIC21.27■■□□□ 1
Scn4aQ9ER60 6030419C18Rik-202ENSMUST00000216294 1601 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Scn4aQ9ER60 Acadvl-201ENSMUST00000018718 2020 ntAPPRIS ALT2 TSL 5 BASIC21.27■■□□□ 1
Scn4aQ9ER60 Plod1-202ENSMUST00000105712 1059 ntTSL 2 BASIC21.27■□□□□ 0.99
Scn4aQ9ER60 Cryzl1-204ENSMUST00000122254 845 ntTSL 3 BASIC21.27■□□□□ 0.99
Scn4aQ9ER60 E130218I03Rik-206ENSMUST00000135228 544 ntAPPRIS P1 TSL 3 BASIC21.27■□□□□ 0.99
Scn4aQ9ER60 Ube2i-211ENSMUST00000173713 890 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
Scn4aQ9ER60 Gm38182-203ENSMUST00000192984 993 ntTSL 1 (best) BASIC21.27■□□□□ 0.99
Scn4aQ9ER60 Pcdhgc5-204ENSMUST00000193941 593 ntTSL 1 (best) BASIC21.27■□□□□ 0.99
Scn4aQ9ER60 Ube2a-205ENSMUST00000201068 1298 ntTSL 5 BASIC21.27■□□□□ 0.99
Scn4aQ9ER60 Gm3654-202ENSMUST00000210597 472 ntTSL 3 BASIC21.27■□□□□ 0.99
Scn4aQ9ER60 Slc46a1-201ENSMUST00000001126 1978 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
Scn4aQ9ER60 Ssc4d-203ENSMUST00000111152 2745 ntAPPRIS P1 TSL 5 BASIC21.26■□□□□ 0.99
Scn4aQ9ER60 Fam104a-201ENSMUST00000120194 2619 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Scn4aQ9ER60 Hnrnpa2b1-210ENSMUST00000204188 1518 ntTSL 5 BASIC21.26■□□□□ 0.99
Scn4aQ9ER60 Wtap-205ENSMUST00000160781 2442 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
Scn4aQ9ER60 Park7-205ENSMUST00000105676 582 ntTSL 5 BASIC21.26■□□□□ 0.99
Scn4aQ9ER60 Gm5566-201ENSMUST00000116118 459 ntBASIC21.26■□□□□ 0.99
Scn4aQ9ER60 Pigyl-202ENSMUST00000148088 676 ntAPPRIS P1 TSL 2 BASIC21.26■□□□□ 0.99
Scn4aQ9ER60 Gm28760-201ENSMUST00000185995 736 ntBASIC21.26■□□□□ 0.99
Scn4aQ9ER60 H2-Bl-210ENSMUST00000195833 829 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
Scn4aQ9ER60 AC154171.1-201ENSMUST00000224610 643 ntBASIC21.26■□□□□ 0.99
Scn4aQ9ER60 Sit1-201ENSMUST00000030180 1228 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Scn4aQ9ER60 Gm13233-201ENSMUST00000118760 1443 ntBASIC21.26■□□□□ 0.99
Scn4aQ9ER60 Gm13244-201ENSMUST00000118855 1446 ntBASIC21.26■□□□□ 0.99
Scn4aQ9ER60 Opn1sw-203ENSMUST00000147483 1426 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
Scn4aQ9ER60 Wdsub1-201ENSMUST00000028368 2072 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Scn4aQ9ER60 Pcolce-201ENSMUST00000031731 1626 ntAPPRIS P2 TSL 1 (best) BASIC21.26■□□□□ 0.99
Scn4aQ9ER60 Gm26688-201ENSMUST00000181176 1568 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Scn4aQ9ER60 Cpq-201ENSMUST00000042167 1923 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Scn4aQ9ER60 Pnkp-203ENSMUST00000107876 1770 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Scn4aQ9ER60 Hus1b-201ENSMUST00000102943 1187 ntAPPRIS P1 BASIC21.25■□□□□ 0.99
Scn4aQ9ER60 Rpl17-ps10-201ENSMUST00000119383 555 ntBASIC21.25■□□□□ 0.99
Scn4aQ9ER60 Rpl17-ps9-201ENSMUST00000119541 555 ntBASIC21.25■□□□□ 0.99
Scn4aQ9ER60 Rpl17-ps4-201ENSMUST00000120241 555 ntBASIC21.25■□□□□ 0.99
Scn4aQ9ER60 Spcs2-ps-201ENSMUST00000122326 682 ntBASIC21.25■□□□□ 0.99
Scn4aQ9ER60 Gm15869-201ENSMUST00000126427 734 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Scn4aQ9ER60 Gm46209-201ENSMUST00000217912 553 ntBASIC21.25■□□□□ 0.99
Scn4aQ9ER60 AC155286.1-201ENSMUST00000218632 448 ntBASIC21.25■□□□□ 0.99
Scn4aQ9ER60 Mrpl27-201ENSMUST00000025278 756 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Scn4aQ9ER60 Gm8399-201ENSMUST00000082300 1117 ntBASIC21.25■□□□□ 0.99
Scn4aQ9ER60 Matn4-201ENSMUST00000103103 2304 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Scn4aQ9ER60 Pid1-201ENSMUST00000168574 2664 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Scn4aQ9ER60 Tmem39b-201ENSMUST00000102588 1810 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Scn4aQ9ER60 Nosip-201ENSMUST00000003513 1814 ntAPPRIS P3 TSL 1 (best) BASIC21.25■□□□□ 0.99
Scn4aQ9ER60 Fn3k-202ENSMUST00000092302 1803 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Scn4aQ9ER60 Klhdc8b-201ENSMUST00000035232 1897 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Scn4aQ9ER60 Ndufs2-202ENSMUST00000111318 1545 ntTSL 5 BASIC21.25■□□□□ 0.99
Scn4aQ9ER60 Majin-202ENSMUST00000113528 1562 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Scn4aQ9ER60 Ppp2r5a-201ENSMUST00000067976 3088 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Scn4aQ9ER60 Mir1897-201ENSMUST00000122581 272 ntBASIC21.25■□□□□ 0.99
Scn4aQ9ER60 Rnaseh2a-206ENSMUST00000128972 1141 ntTSL 2 BASIC21.25■□□□□ 0.99
Scn4aQ9ER60 Mettl26-201ENSMUST00000026827 817 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Scn4aQ9ER60 Iqcf4-201ENSMUST00000085111 756 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Scn4aQ9ER60 A230060F14Rik-202ENSMUST00000190739 1889 ntBASIC21.25■□□□□ 0.99
Scn4aQ9ER60 Tnfrsf13c-202ENSMUST00000109535 1983 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
Scn4aQ9ER60 Ddit4l-201ENSMUST00000053855 2722 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Scn4aQ9ER60 Nckap1-201ENSMUST00000028386 4469 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Scn4aQ9ER60 Prss54-201ENSMUST00000052690 1438 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
Scn4aQ9ER60 Irx4-202ENSMUST00000176684 2384 ntAPPRIS P1 TSL 5 BASIC21.24■□□□□ 0.99
Scn4aQ9ER60 Eva1c-203ENSMUST00000099548 1948 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Scn4aQ9ER60 Tspan32-204ENSMUST00000105923 1499 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Scn4aQ9ER60 Inca1-203ENSMUST00000108542 1080 ntAPPRIS P3 TSL 1 (best) BASIC21.24■□□□□ 0.99
Scn4aQ9ER60 Htr2c-203ENSMUST00000112831 809 ntTSL 3 BASIC21.24■□□□□ 0.99
Scn4aQ9ER60 Ube2j2-206ENSMUST00000118192 922 ntTSL 5 BASIC21.24■□□□□ 0.99
Scn4aQ9ER60 4930449I04Rik-201ENSMUST00000198191 1123 ntBASIC21.24■□□□□ 0.99
Scn4aQ9ER60 AC238811.3-201ENSMUST00000225422 709 ntBASIC21.24■□□□□ 0.99
Scn4aQ9ER60 Fars2-202ENSMUST00000099582 962 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Scn4aQ9ER60 Mef2d-203ENSMUST00000107559 1791 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Scn4aQ9ER60 Med9-201ENSMUST00000081980 1920 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Scn4aQ9ER60 Crem-234ENSMUST00000154470 1996 ntTSL 5 BASIC21.23■□□□□ 0.99
Scn4aQ9ER60 Mdm1-204ENSMUST00000169817 2022 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
Scn4aQ9ER60 Gm14026-201ENSMUST00000120625 1789 ntBASIC21.23■□□□□ 0.99
Scn4aQ9ER60 Lonp2-201ENSMUST00000034141 2860 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Scn4aQ9ER60 Mark2-203ENSMUST00000051711 2867 ntAPPRIS P4 TSL 1 (best) BASIC21.23■□□□□ 0.99
Scn4aQ9ER60 Gm7067-201ENSMUST00000207698 1249 ntBASIC21.23■□□□□ 0.99
Scn4aQ9ER60 AC131777.1-201ENSMUST00000214749 387 ntTSL 3 BASIC21.23■□□□□ 0.99
Scn4aQ9ER60 AC159896.2-201ENSMUST00000214753 269 ntBASIC21.23■□□□□ 0.99
Scn4aQ9ER60 AC154319.1-201ENSMUST00000216330 312 ntBASIC21.23■□□□□ 0.99
Scn4aQ9ER60 AL589735.1-201ENSMUST00000224353 270 ntBASIC21.23■□□□□ 0.99
Scn4aQ9ER60 Rhox2e-201ENSMUST00000072167 799 ntAPPRIS P1 TSL 5 BASIC21.23■□□□□ 0.99
Scn4aQ9ER60 Gm5356-201ENSMUST00000093326 615 ntBASIC21.23■□□□□ 0.99
Scn4aQ9ER60 Osbpl1a-207ENSMUST00000121808 3030 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Scn4aQ9ER60 Nfe2-208ENSMUST00000149111 1878 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Scn4aQ9ER60 Gm20646-201ENSMUST00000176807 1316 ntTSL 3 BASIC21.23■□□□□ 0.99
Scn4aQ9ER60 AC114008.2-201ENSMUST00000227699 1347 ntBASIC21.23■□□□□ 0.99
Scn4aQ9ER60 Max-202ENSMUST00000110395 1942 ntAPPRIS P3 TSL 1 (best) BASIC21.23■□□□□ 0.99
Scn4aQ9ER60 Picalm-205ENSMUST00000207225 3489 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Scn4aQ9ER60 Cradd-201ENSMUST00000053594 1661 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Scn4aQ9ER60 Sar1a-201ENSMUST00000020285 2613 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Scn4aQ9ER60 Sufu-202ENSMUST00000111867 1747 ntAPPRIS ALT1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Scn4aQ9ER60 BC051019-202ENSMUST00000106735 1957 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Scn4aQ9ER60 Ccdc68-201ENSMUST00000043929 1618 ntAPPRIS P2 TSL 1 (best) BASIC21.22■□□□□ 0.99
Scn4aQ9ER60 Gm27701-201ENSMUST00000184498 110 ntBASIC21.22■□□□□ 0.99
Scn4aQ9ER60 Gm43714-201ENSMUST00000198351 1204 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Scn4aQ9ER60 Gm40193-201ENSMUST00000209971 237 ntAPPRIS P1 TSL 5 BASIC21.22■□□□□ 0.99
Scn4aQ9ER60 Elf3-201ENSMUST00000003135 2095 ntAPPRIS P3 TSL 1 (best) BASIC21.22■□□□□ 0.99
Scn4aQ9ER60 Bmp2k-202ENSMUST00000112974 3244 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Scn4aQ9ER60 Prrxl1-203ENSMUST00000187377 1629 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Scn4aQ9ER60 Polr2m-202ENSMUST00000163972 2138 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Retrieved 100 of 76,532 protein–RNA pairs in 30.7 ms