Protein–RNA interactions for Protein: Q9EPU0

Upf1, Regulator of nonsense transcripts 1, mousemouse

Known RBP Predictions only

Length 1,124 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf1Q9EPU0 Hnrnpa2b1-210ENSMUST00000204188 1518 ntTSL 5 BASIC17.7■□□□□ 0.42
Upf1Q9EPU0 Tbc1d25-201ENSMUST00000039892 2648 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
Upf1Q9EPU0 Galnt3-201ENSMUST00000028378 3885 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Upf1Q9EPU0 Cfap69-205ENSMUST00000135252 2188 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Upf1Q9EPU0 Serpine2-201ENSMUST00000027467 2210 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Upf1Q9EPU0 Lrrc57-202ENSMUST00000102497 1962 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Upf1Q9EPU0 Ppp2r2a-204ENSMUST00000225380 1988 ntBASIC17.7■□□□□ 0.42
Upf1Q9EPU0 Gm7669-201ENSMUST00000210184 1603 ntBASIC17.69■□□□□ 0.42
Upf1Q9EPU0 Hnrnpa2b1-201ENSMUST00000069949 1647 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Upf1Q9EPU0 Zdhhc6-201ENSMUST00000076891 2263 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Upf1Q9EPU0 Olah-203ENSMUST00000194918 1764 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Upf1Q9EPU0 Cacul1-203ENSMUST00000166712 5700 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
Upf1Q9EPU0 Ndufv1-201ENSMUST00000042497 1661 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Upf1Q9EPU0 Tcta-201ENSMUST00000044725 1668 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Upf1Q9EPU0 1700042O10Rik-201ENSMUST00000151032 1075 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Upf1Q9EPU0 Gm33474-201ENSMUST00000199486 1231 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Upf1Q9EPU0 AC155286.1-201ENSMUST00000218632 448 ntBASIC17.69■□□□□ 0.42
Upf1Q9EPU0 AC159006.1-201ENSMUST00000226396 258 ntBASIC17.69■□□□□ 0.42
Upf1Q9EPU0 Pabpn1l-201ENSMUST00000093059 1148 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Upf1Q9EPU0 Ahr-202ENSMUST00000116436 5548 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Upf1Q9EPU0 Rita1-201ENSMUST00000031599 1573 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Upf1Q9EPU0 Ankle2-201ENSMUST00000031474 5215 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Upf1Q9EPU0 Arpc4-203ENSMUST00000203578 1323 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Upf1Q9EPU0 Rapsn-203ENSMUST00000111446 1458 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Upf1Q9EPU0 Zc3h14-202ENSMUST00000057000 3046 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Upf1Q9EPU0 Abhd16b-201ENSMUST00000069649 1775 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
Upf1Q9EPU0 Gja3-201ENSMUST00000061614 2766 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Upf1Q9EPU0 Scaf11-201ENSMUST00000047835 5766 ntTSL 5 BASIC17.68■□□□□ 0.42
Upf1Q9EPU0 Wdsub1-201ENSMUST00000028368 2072 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Upf1Q9EPU0 Gm42853-201ENSMUST00000201273 1387 ntBASIC17.68■□□□□ 0.42
Upf1Q9EPU0 Fbxl5-201ENSMUST00000047857 2858 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
Upf1Q9EPU0 Spry1-202ENSMUST00000108107 2773 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Upf1Q9EPU0 Gm26618-201ENSMUST00000181123 497 ntTSL 2 BASIC17.68■□□□□ 0.42
Upf1Q9EPU0 Gm44974-201ENSMUST00000206387 1279 ntBASIC17.68■□□□□ 0.42
Upf1Q9EPU0 CT485787.1-201ENSMUST00000225617 968 ntBASIC17.68■□□□□ 0.42
Upf1Q9EPU0 Rnf112-203ENSMUST00000102661 3118 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Upf1Q9EPU0 Dennd3-201ENSMUST00000043414 5299 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Upf1Q9EPU0 Gas2-203ENSMUST00000107591 2232 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Upf1Q9EPU0 Pnpla2-202ENSMUST00000064151 1799 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
Upf1Q9EPU0 Gm11661-201ENSMUST00000121761 1327 ntBASIC17.68■□□□□ 0.42
Upf1Q9EPU0 Gm13589-201ENSMUST00000146404 1675 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Upf1Q9EPU0 Rgs6-206ENSMUST00000186309 1693 ntAPPRIS P4 TSL 5 BASIC17.67■□□□□ 0.42
Upf1Q9EPU0 Fam117b-201ENSMUST00000036540 5532 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Upf1Q9EPU0 Krt42-201ENSMUST00000017270 1542 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Upf1Q9EPU0 Tox2-201ENSMUST00000099110 2166 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
Upf1Q9EPU0 Kmt2b-201ENSMUST00000006470 8469 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
Upf1Q9EPU0 Jpt1-201ENSMUST00000021083 1375 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Upf1Q9EPU0 Gse1-202ENSMUST00000118136 4492 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Upf1Q9EPU0 Pgf-204ENSMUST00000223220 2080 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Upf1Q9EPU0 Gm2885-201ENSMUST00000181895 1442 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Upf1Q9EPU0 Nfe2-207ENSMUST00000134554 1761 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
Upf1Q9EPU0 Inca1-203ENSMUST00000108542 1080 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
Upf1Q9EPU0 E130218I03Rik-206ENSMUST00000135228 544 ntAPPRIS P1 TSL 3 BASIC17.67■□□□□ 0.42
Upf1Q9EPU0 Gm42791-202ENSMUST00000147473 727 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
Upf1Q9EPU0 1700007J10Rik-202ENSMUST00000153431 1111 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Upf1Q9EPU0 Vhl-ps1-201ENSMUST00000174813 597 ntBASIC17.67■□□□□ 0.42
Upf1Q9EPU0 Gm5108-201ENSMUST00000177891 543 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Upf1Q9EPU0 Rps19-ps13-201ENSMUST00000180504 441 ntBASIC17.67■□□□□ 0.42
Upf1Q9EPU0 Parp6-201ENSMUST00000026267 2709 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
Upf1Q9EPU0 Traf3-203ENSMUST00000117269 6972 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Upf1Q9EPU0 Gm42466-201ENSMUST00000202099 1301 ntBASIC17.67■□□□□ 0.42
Upf1Q9EPU0 Map4k4-201ENSMUST00000163854 5782 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
Upf1Q9EPU0 Trmt2a-202ENSMUST00000100099 2235 ntAPPRIS P5 TSL 1 (best) BASIC17.67■□□□□ 0.42
Upf1Q9EPU0 Nespas-203ENSMUST00000151472 2248 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Upf1Q9EPU0 Trmu-201ENSMUST00000023019 1526 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Upf1Q9EPU0 Tmem164-201ENSMUST00000087333 5149 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Upf1Q9EPU0 Syndig1-202ENSMUST00000109935 2050 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
Upf1Q9EPU0 Bmp2k-202ENSMUST00000112974 3244 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Upf1Q9EPU0 Fam241b-204ENSMUST00000125704 1769 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Upf1Q9EPU0 9530082P21Rik-202ENSMUST00000181291 1798 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Upf1Q9EPU0 Nfya-206ENSMUST00000160319 1407 ntTSL 5 BASIC17.66■□□□□ 0.42
Upf1Q9EPU0 BC026585-201ENSMUST00000046743 1618 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Upf1Q9EPU0 Nat8f1-201ENSMUST00000161198 1021 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Upf1Q9EPU0 B230217C12Rik-204ENSMUST00000170806 1118 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Upf1Q9EPU0 Gm8835-201ENSMUST00000173096 1169 ntBASIC17.66■□□□□ 0.42
Upf1Q9EPU0 Gm9522-201ENSMUST00000182394 926 ntBASIC17.66■□□□□ 0.42
Upf1Q9EPU0 AC158529.1-201ENSMUST00000223618 239 ntBASIC17.66■□□□□ 0.42
Upf1Q9EPU0 Sit1-201ENSMUST00000030180 1228 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Upf1Q9EPU0 Napa-201ENSMUST00000006181 2517 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Upf1Q9EPU0 Pfn2-201ENSMUST00000066882 2342 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Upf1Q9EPU0 R3hcc1-201ENSMUST00000118374 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Upf1Q9EPU0 Cxcr3-201ENSMUST00000056614 1731 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Upf1Q9EPU0 Hr-203ENSMUST00000161069 5607 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Upf1Q9EPU0 Il17re-203ENSMUST00000101065 1973 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Upf1Q9EPU0 Krt28-201ENSMUST00000006963 1624 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Upf1Q9EPU0 Opn1sw-203ENSMUST00000147483 1426 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Upf1Q9EPU0 Scarb1-201ENSMUST00000086075 2521 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Upf1Q9EPU0 Ahcyl2-204ENSMUST00000115242 5152 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
Upf1Q9EPU0 Gm5303-201ENSMUST00000117943 1252 ntBASIC17.65■□□□□ 0.42
Upf1Q9EPU0 Gm14508-201ENSMUST00000127049 901 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Upf1Q9EPU0 Ube2i-211ENSMUST00000173713 890 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Upf1Q9EPU0 Pyy-204ENSMUST00000177304 551 ntAPPRIS ALT2 TSL 2 BASIC17.65■□□□□ 0.42
Upf1Q9EPU0 Gm43703-201ENSMUST00000200523 763 ntBASIC17.65■□□□□ 0.42
Upf1Q9EPU0 Blvra-201ENSMUST00000002064 1160 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Upf1Q9EPU0 4930518P08Rik-201ENSMUST00000221281 1187 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Upf1Q9EPU0 AC090659.2-201ENSMUST00000225378 1186 ntBASIC17.65■□□□□ 0.42
Upf1Q9EPU0 Tmem54-202ENSMUST00000030577 988 ntAPPRIS ALT2 TSL 3 BASIC17.65■□□□□ 0.42
Upf1Q9EPU0 Nol4l-201ENSMUST00000035346 6399 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Upf1Q9EPU0 Hspa1l-201ENSMUST00000007248 2472 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Upf1Q9EPU0 Slc5a10-203ENSMUST00000148584 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Retrieved 100 of 76,532 protein–RNA pairs in 36.6 ms