Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 Blvrb-204ENSMUST00000133750 509 ntTSL 2 BASIC16.52■□□□□ 0.24
Ddx56Q9D0R4 Dnmt3a-ps1-201ENSMUST00000192011 1271 ntBASIC16.52■□□□□ 0.24
Ddx56Q9D0R4 Gm40457-201ENSMUST00000205319 1174 ntTSL 5 BASIC16.52■□□□□ 0.24
Ddx56Q9D0R4 Hs3st2-202ENSMUST00000206880 1149 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
Ddx56Q9D0R4 AC127302.2-201ENSMUST00000215212 268 ntBASIC16.52■□□□□ 0.24
Ddx56Q9D0R4 Gm18669-201ENSMUST00000216049 778 ntBASIC16.52■□□□□ 0.24
Ddx56Q9D0R4 Apof-201ENSMUST00000050901 1258 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Ddx56Q9D0R4 Lrch1-205ENSMUST00000228252 3125 ntAPPRIS ALT2 BASIC16.52■□□□□ 0.24
Ddx56Q9D0R4 Nyx-201ENSMUST00000050434 5183 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Ddx56Q9D0R4 Tnfrsf1a-201ENSMUST00000032491 2156 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Ddx56Q9D0R4 Kcnj6-202ENSMUST00000099508 3086 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Ddx56Q9D0R4 Fubp1-205ENSMUST00000196695 2374 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.23
Ddx56Q9D0R4 Gbe1-203ENSMUST00000163832 2984 ntAPPRIS P5 TSL 5 BASIC16.52■□□□□ 0.23
Ddx56Q9D0R4 Nrxn1-216ENSMUST00000174331 6282 ntAPPRIS ALT1 TSL 5 BASIC16.52■□□□□ 0.23
Ddx56Q9D0R4 Clvs2-201ENSMUST00000019920 2717 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Ddx56Q9D0R4 Sh2d4a-201ENSMUST00000066594 2718 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Ddx56Q9D0R4 Pde4d-207ENSMUST00000120664 4207 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
Ddx56Q9D0R4 Unc5a-201ENSMUST00000026994 3995 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.23
Ddx56Q9D0R4 Wdr91-201ENSMUST00000081214 2682 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Ddx56Q9D0R4 Col11a2-201ENSMUST00000087497 6048 ntAPPRIS P2 TSL 2 BASIC16.51■□□□□ 0.23
Ddx56Q9D0R4 Tfap2c-201ENSMUST00000030391 2838 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Ddx56Q9D0R4 Vangl2-202ENSMUST00000111263 6528 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
Ddx56Q9D0R4 Cog8-201ENSMUST00000034391 2954 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Ddx56Q9D0R4 Tdg-ps-201ENSMUST00000051363 2968 ntBASIC16.51■□□□□ 0.23
Ddx56Q9D0R4 Rbm42-202ENSMUST00000108141 1526 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
Ddx56Q9D0R4 Rsu1-201ENSMUST00000028059 1546 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Ddx56Q9D0R4 Sdc1-205ENSMUST00000171158 2311 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Ddx56Q9D0R4 Zbtb16-202ENSMUST00000216150 2505 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Ddx56Q9D0R4 Mapk8ip3-201ENSMUST00000088345 5543 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
Ddx56Q9D0R4 Nes-201ENSMUST00000090973 6126 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
Ddx56Q9D0R4 Edem2-201ENSMUST00000040833 2290 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Ddx56Q9D0R4 Tcta-201ENSMUST00000044725 1668 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Ddx56Q9D0R4 Ubb-201ENSMUST00000019649 1499 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Ddx56Q9D0R4 Thap3-202ENSMUST00000105665 832 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
Ddx56Q9D0R4 A730015C16Rik-201ENSMUST00000164855 1221 ntAPPRIS P1 BASIC16.51■□□□□ 0.23
Ddx56Q9D0R4 Washc3-203ENSMUST00000182183 838 ntAPPRIS ALT2 TSL 2 BASIC16.51■□□□□ 0.23
Ddx56Q9D0R4 Ank2-226ENSMUST00000189368 339 ntBASIC16.51■□□□□ 0.23
Ddx56Q9D0R4 Phf21b-203ENSMUST00000159939 3639 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
Ddx56Q9D0R4 Ace-201ENSMUST00000001963 4906 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Ddx56Q9D0R4 Snx17-201ENSMUST00000031029 2018 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Ddx56Q9D0R4 Spdef-201ENSMUST00000025054 1824 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Ddx56Q9D0R4 Brap-201ENSMUST00000031414 3744 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Ddx56Q9D0R4 B4galt3-201ENSMUST00000064272 1998 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Ddx56Q9D0R4 Cdkn1b-203ENSMUST00000204807 1757 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
Ddx56Q9D0R4 Sema6b-201ENSMUST00000001256 3736 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Ddx56Q9D0R4 Eda-205ENSMUST00000113778 4942 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
Ddx56Q9D0R4 Eda-207ENSMUST00000113780 4915 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Ddx56Q9D0R4 Eda-208ENSMUST00000113781 4915 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Ddx56Q9D0R4 Slc39a7-201ENSMUST00000025186 2244 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Ddx56Q9D0R4 Kctd12-202ENSMUST00000184744 6057 ntAPPRIS P1 BASIC16.5■□□□□ 0.23
Ddx56Q9D0R4 Pspc1-202ENSMUST00000163924 2863 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
Ddx56Q9D0R4 Rasgef1b-206ENSMUST00000161516 2523 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Ddx56Q9D0R4 Gm13054-201ENSMUST00000154192 820 ntTSL 3 BASIC16.5■□□□□ 0.23
Ddx56Q9D0R4 AL669916.2-201ENSMUST00000213219 358 ntTSL 2 BASIC16.5■□□□□ 0.23
Ddx56Q9D0R4 AC153556.1-201ENSMUST00000215135 794 ntTSL 5 BASIC16.5■□□□□ 0.23
Ddx56Q9D0R4 AC133183.1-201ENSMUST00000221229 429 ntAPPRIS P1 TSL 3 BASIC16.5■□□□□ 0.23
Ddx56Q9D0R4 AC171004.1-201ENSMUST00000221723 664 ntTSL 3 BASIC16.5■□□□□ 0.23
Ddx56Q9D0R4 4930428E07Rik-201ENSMUST00000222132 920 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Ddx56Q9D0R4 Gm9857-201ENSMUST00000050914 393 ntAPPRIS P1 BASIC16.5■□□□□ 0.23
Ddx56Q9D0R4 Rai1-201ENSMUST00000064190 7348 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Ddx56Q9D0R4 Gata5-201ENSMUST00000015771 3277 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Ddx56Q9D0R4 Taf10-203ENSMUST00000141116 4281 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Ddx56Q9D0R4 B3gnt4-201ENSMUST00000031384 1423 ntAPPRIS P1 BASIC16.5■□□□□ 0.23
Ddx56Q9D0R4 A330040F15Rik-202ENSMUST00000224046 1918 ntBASIC16.5■□□□□ 0.23
Ddx56Q9D0R4 Zkscan3-201ENSMUST00000070785 2561 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Ddx56Q9D0R4 Zfx-201ENSMUST00000088102 7002 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Ddx56Q9D0R4 Hs3st5-203ENSMUST00000168572 2715 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Ddx56Q9D0R4 Gtf3c4-204ENSMUST00000171404 7127 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Ddx56Q9D0R4 Hbegf-201ENSMUST00000025363 2373 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Ddx56Q9D0R4 Elavl3-203ENSMUST00000215901 3037 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Ddx56Q9D0R4 Plpbp-202ENSMUST00000098851 1368 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Ddx56Q9D0R4 Srpr-201ENSMUST00000034541 2993 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Ddx56Q9D0R4 Zfp691-201ENSMUST00000052715 2341 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Ddx56Q9D0R4 Gimap3-201ENSMUST00000038811 1968 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
Ddx56Q9D0R4 Pmm1-201ENSMUST00000023112 1300 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Ddx56Q9D0R4 Prkag1-201ENSMUST00000168846 1638 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Ddx56Q9D0R4 Khdc1c-201ENSMUST00000070223 1946 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Ddx56Q9D0R4 Fam222b-202ENSMUST00000100782 2473 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
Ddx56Q9D0R4 Iqsec1-202ENSMUST00000101153 8036 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
Ddx56Q9D0R4 Gm15952-201ENSMUST00000122858 490 ntTSL 3 BASIC16.49■□□□□ 0.23
Ddx56Q9D0R4 Gm12497-201ENSMUST00000138778 237 ntBASIC16.49■□□□□ 0.23
Ddx56Q9D0R4 Gm26871-202ENSMUST00000180774 695 ntTSL 2 BASIC16.49■□□□□ 0.23
Ddx56Q9D0R4 Smim22-208ENSMUST00000185147 399 ntAPPRIS ALT2 TSL 2 BASIC16.49■□□□□ 0.23
Ddx56Q9D0R4 Gm21362-201ENSMUST00000194272 928 ntBASIC16.49■□□□□ 0.23
Ddx56Q9D0R4 Tmem241-205ENSMUST00000209859 1426 ntAPPRIS P4 TSL 1 (best) BASIC16.49■□□□□ 0.23
Ddx56Q9D0R4 CAAA01066804.1-201ENSMUST00000217800 611 ntTSL 3 BASIC16.49■□□□□ 0.23
Ddx56Q9D0R4 Nmu-201ENSMUST00000031146 828 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Ddx56Q9D0R4 Ppib-201ENSMUST00000034947 892 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Ddx56Q9D0R4 Hbb-bt-201ENSMUST00000098192 703 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Ddx56Q9D0R4 Rhog-201ENSMUST00000098230 1269 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Ddx56Q9D0R4 Hist3h2a-201ENSMUST00000108817 2146 ntAPPRIS P1 BASIC16.49■□□□□ 0.23
Ddx56Q9D0R4 Shank1-201ENSMUST00000107934 6477 ntAPPRIS ALT2 TSL 5 BASIC16.49■□□□□ 0.23
Ddx56Q9D0R4 Gm45844-204ENSMUST00000209833 1524 ntAPPRIS ALT2 TSL 5 BASIC16.49■□□□□ 0.23
Ddx56Q9D0R4 Cyp2w1-201ENSMUST00000031521 1512 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
Ddx56Q9D0R4 Ch25h-201ENSMUST00000050562 1350 ntAPPRIS P1 BASIC16.49■□□□□ 0.23
Ddx56Q9D0R4 Gm13425-201ENSMUST00000145389 5391 ntTSL 3 BASIC16.49■□□□□ 0.23
Ddx56Q9D0R4 Tmem5-205ENSMUST00000140299 4793 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Ddx56Q9D0R4 Gm7669-201ENSMUST00000210184 1603 ntBASIC16.48■□□□□ 0.23
Ddx56Q9D0R4 Rps6kl1-201ENSMUST00000019379 2304 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Ddx56Q9D0R4 Fam185a-201ENSMUST00000056045 3027 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Retrieved 100 of 76,532 protein–RNA pairs in 26 ms