Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 AC107711.5-202ENSMUST00000226429 702 ntBASIC17.56■□□□□ 0.4
Smc1aQ9CU62 Nudt16l1-201ENSMUST00000050881 1269 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Smc1aQ9CU62 Angptl8-201ENSMUST00000058777 865 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Smc1aQ9CU62 Tmem128-201ENSMUST00000087511 1291 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Smc1aQ9CU62 0610010F05Rik-203ENSMUST00000109532 4106 ntAPPRIS P2 TSL 5 BASIC17.56■□□□□ 0.4
Smc1aQ9CU62 Wnk2-207ENSMUST00000159559 6584 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
Smc1aQ9CU62 Sirt6-201ENSMUST00000042923 1891 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
Smc1aQ9CU62 Men1-205ENSMUST00000113501 2508 ntTSL 5 BASIC17.56■□□□□ 0.4
Smc1aQ9CU62 Cep57-201ENSMUST00000034398 2523 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
Smc1aQ9CU62 Taok3-202ENSMUST00000111975 2172 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Smc1aQ9CU62 Gm9917-202ENSMUST00000181099 1499 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Smc1aQ9CU62 Ndufaf3-201ENSMUST00000074208 1487 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Smc1aQ9CU62 Tdrd7-201ENSMUST00000102929 3716 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
Smc1aQ9CU62 Mvd-201ENSMUST00000006692 1756 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Smc1aQ9CU62 Mon1b-201ENSMUST00000035777 4998 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Smc1aQ9CU62 Cask-204ENSMUST00000115438 8366 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Smc1aQ9CU62 Sctr-201ENSMUST00000072886 2012 ntAPPRIS P3 TSL 2 BASIC17.55■□□□□ 0.4
Smc1aQ9CU62 Ap1s1-201ENSMUST00000111080 1353 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Smc1aQ9CU62 Psmd12-203ENSMUST00000106752 1955 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Smc1aQ9CU62 Dtx3-202ENSMUST00000116229 1994 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Smc1aQ9CU62 Mark2-209ENSMUST00000165965 2874 ntAPPRIS P4 TSL 1 (best) BASIC17.55■□□□□ 0.4
Smc1aQ9CU62 Naa50-203ENSMUST00000159514 3756 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Smc1aQ9CU62 Ppp1r12b-202ENSMUST00000086444 3137 ntAPPRIS P2 TSL 5 BASIC17.55■□□□□ 0.4
Smc1aQ9CU62 Krt6b-201ENSMUST00000023786 2226 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Smc1aQ9CU62 Slc38a10-202ENSMUST00000053692 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
Smc1aQ9CU62 Zdhhc8-201ENSMUST00000076957 4867 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Smc1aQ9CU62 Zfp451-201ENSMUST00000019861 3958 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
Smc1aQ9CU62 Lrrc25-201ENSMUST00000052437 1313 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Smc1aQ9CU62 Gpc5-202ENSMUST00000175665 2187 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Smc1aQ9CU62 Rnls-201ENSMUST00000096114 1597 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Smc1aQ9CU62 Nfkbie-201ENSMUST00000024742 2422 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Smc1aQ9CU62 Nfs1-202ENSMUST00000109600 709 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Smc1aQ9CU62 Drap1-202ENSMUST00000113673 744 ntTSL 2 BASIC17.55■□□□□ 0.4
Smc1aQ9CU62 Gm16272-201ENSMUST00000128218 388 ntTSL 2 BASIC17.55■□□□□ 0.4
Smc1aQ9CU62 Zfp747-202ENSMUST00000205832 618 ntTSL 3 BASIC17.55■□□□□ 0.4
Smc1aQ9CU62 Gm32031-203ENSMUST00000208993 649 ntTSL 2 BASIC17.55■□□□□ 0.4
Smc1aQ9CU62 Vegfc-203ENSMUST00000210831 555 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Smc1aQ9CU62 Gm5867-201ENSMUST00000063197 592 ntBASIC17.55■□□□□ 0.4
Smc1aQ9CU62 Tmem50b-201ENSMUST00000023686 2347 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Smc1aQ9CU62 Lmnb1-201ENSMUST00000025486 2843 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Smc1aQ9CU62 Wdr55-201ENSMUST00000049323 1498 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Smc1aQ9CU62 Ntrk2-205ENSMUST00000224402 2284 ntBASIC17.55■□□□□ 0.4
Smc1aQ9CU62 Rasgef1b-206ENSMUST00000161516 2523 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Smc1aQ9CU62 Coro1a-202ENSMUST00000106364 1747 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Smc1aQ9CU62 Rfc5-201ENSMUST00000086461 2796 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Smc1aQ9CU62 Tle3-205ENSMUST00000159630 4065 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Smc1aQ9CU62 Fgf13-201ENSMUST00000033473 2499 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Smc1aQ9CU62 Wt1-201ENSMUST00000111098 2395 ntTSL 5 BASIC17.54■□□□□ 0.4
Smc1aQ9CU62 Rint1-205ENSMUST00000120869 1886 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Smc1aQ9CU62 Tnfrsf25-202ENSMUST00000035275 1603 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
Smc1aQ9CU62 Ttll3-202ENSMUST00000038889 3114 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
Smc1aQ9CU62 Bicd2-203ENSMUST00000110085 4588 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Smc1aQ9CU62 Ccdc166-201ENSMUST00000182172 2584 ntBASIC17.54■□□□□ 0.4
Smc1aQ9CU62 Kif1c-201ENSMUST00000072187 5046 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Smc1aQ9CU62 Rnf220-203ENSMUST00000102690 1842 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Smc1aQ9CU62 Asic1-205ENSMUST00000228185 1818 ntBASIC17.54■□□□□ 0.4
Smc1aQ9CU62 Casc4-201ENSMUST00000078752 4215 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Smc1aQ9CU62 Cyp26b1-203ENSMUST00000204109 1340 ntTSL 5 BASIC17.54■□□□□ 0.4
Smc1aQ9CU62 Stk40-201ENSMUST00000094761 3492 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Smc1aQ9CU62 Hip1r-201ENSMUST00000000939 6735 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Smc1aQ9CU62 Slc35c1-202ENSMUST00000125276 2668 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Smc1aQ9CU62 Dguok-202ENSMUST00000113888 1007 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Smc1aQ9CU62 Gm12644-201ENSMUST00000119935 606 ntBASIC17.54■□□□□ 0.4
Smc1aQ9CU62 Enkd1-201ENSMUST00000013299 1275 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Smc1aQ9CU62 Scpep1os-201ENSMUST00000139592 811 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Smc1aQ9CU62 Dguok-201ENSMUST00000014698 1107 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Smc1aQ9CU62 Faap20-210ENSMUST00000178473 1076 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
Smc1aQ9CU62 Gm29629-201ENSMUST00000187926 386 ntTSL 3 BASIC17.54■□□□□ 0.4
Smc1aQ9CU62 Gm44450-201ENSMUST00000199528 114 ntBASIC17.54■□□□□ 0.4
Smc1aQ9CU62 Hs3st2-202ENSMUST00000206880 1149 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Smc1aQ9CU62 Gm33054-201ENSMUST00000216588 313 ntTSL 5 BASIC17.54■□□□□ 0.4
Smc1aQ9CU62 Timm13-204ENSMUST00000219896 542 ntTSL 3 BASIC17.54■□□□□ 0.4
Smc1aQ9CU62 Npcd-201ENSMUST00000023060 1162 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Smc1aQ9CU62 Tulp1-202ENSMUST00000114794 1738 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Smc1aQ9CU62 3110002H16Rik-201ENSMUST00000025276 2170 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Smc1aQ9CU62 Axin1-201ENSMUST00000074370 3777 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
Smc1aQ9CU62 Matk-203ENSMUST00000119547 1916 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Smc1aQ9CU62 P2ry6-201ENSMUST00000060174 1946 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Smc1aQ9CU62 Ephb1-203ENSMUST00000149800 3471 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Smc1aQ9CU62 Mbp-206ENSMUST00000102812 2108 ntAPPRIS ALT2 TSL 2 BASIC17.54■□□□□ 0.4
Smc1aQ9CU62 Casp8ap2-201ENSMUST00000029950 6799 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Smc1aQ9CU62 Agk-201ENSMUST00000031977 2531 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Smc1aQ9CU62 B3gnt4-201ENSMUST00000031384 1423 ntAPPRIS P1 BASIC17.54■□□□□ 0.4
Smc1aQ9CU62 Dbnl-202ENSMUST00000102928 2295 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
Smc1aQ9CU62 Wdr45-201ENSMUST00000043045 1609 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Smc1aQ9CU62 Sppl2b-201ENSMUST00000035597 2869 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Smc1aQ9CU62 Epb41l1-204ENSMUST00000103137 6490 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Smc1aQ9CU62 Tes-202ENSMUST00000115467 2440 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Smc1aQ9CU62 Ocln-205ENSMUST00000160859 2443 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Smc1aQ9CU62 Pex5l-206ENSMUST00000108226 2632 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
Smc1aQ9CU62 Sox13-205ENSMUST00000153799 3693 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
Smc1aQ9CU62 Malsu1-203ENSMUST00000128616 2819 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Smc1aQ9CU62 Des-201ENSMUST00000027409 3028 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Smc1aQ9CU62 9130024F11Rik-201ENSMUST00000135238 1300 ntTSL 2 BASIC17.53■□□□□ 0.4
Smc1aQ9CU62 Hdhd2-202ENSMUST00000097521 1716 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Smc1aQ9CU62 Gpr3-202ENSMUST00000105911 2518 ntAPPRIS P1 BASIC17.53■□□□□ 0.4
Smc1aQ9CU62 Nek1-202ENSMUST00000120689 5478 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
Smc1aQ9CU62 Abhd15-201ENSMUST00000094004 2662 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Smc1aQ9CU62 Nap1l4-206ENSMUST00000208190 2259 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Smc1aQ9CU62 Cog6-204ENSMUST00000193432 2078 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Retrieved 100 of 76,532 protein–RNA pairs in 24.8 ms