Protein–RNA interactions for Protein: Q99LM2

Cdk5rap3, CDK5 regulatory subunit-associated protein 3, mousemouse

Predictions only

Length 503 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdk5rap3Q99LM2 Hoxa10-201ENSMUST00000121043 1436 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
Cdk5rap3Q99LM2 Prkab1-202ENSMUST00000111999 2026 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
Cdk5rap3Q99LM2 Foxl2-201ENSMUST00000051312 3256 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
Cdk5rap3Q99LM2 Kmt5b-213ENSMUST00000176262 3933 ntAPPRIS P3 TSL 5 BASIC16.3■□□□□ 0.2
Cdk5rap3Q99LM2 Cpeb3-201ENSMUST00000079754 5899 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
Cdk5rap3Q99LM2 Gm10013-201ENSMUST00000106074 672 ntBASIC16.3■□□□□ 0.2
Cdk5rap3Q99LM2 Naa10-204ENSMUST00000114389 1031 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Cdk5rap3Q99LM2 Gssos2-201ENSMUST00000130859 727 ntTSL 3 BASIC16.3■□□□□ 0.2
Cdk5rap3Q99LM2 Gm9013-201ENSMUST00000132939 882 ntBASIC16.3■□□□□ 0.2
Cdk5rap3Q99LM2 Gm6257-201ENSMUST00000163864 910 ntBASIC16.3■□□□□ 0.2
Cdk5rap3Q99LM2 AC125350.1-201ENSMUST00000225115 903 ntBASIC16.3■□□□□ 0.2
Cdk5rap3Q99LM2 Fam213b-201ENSMUST00000030935 883 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Cdk5rap3Q99LM2 Nt5c1a-201ENSMUST00000068262 1220 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Cdk5rap3Q99LM2 Gm9987-201ENSMUST00000069768 567 ntBASIC16.3■□□□□ 0.2
Cdk5rap3Q99LM2 Tbpl1-201ENSMUST00000095794 1195 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Cdk5rap3Q99LM2 Malt1-201ENSMUST00000049248 5073 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Cdk5rap3Q99LM2 Slc35e4-202ENSMUST00000109995 3063 ntAPPRIS ALT1 TSL 5 BASIC16.3■□□□□ 0.2
Cdk5rap3Q99LM2 Slc35e4-201ENSMUST00000051207 3059 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Cdk5rap3Q99LM2 Fyn-202ENSMUST00000099967 3528 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Cdk5rap3Q99LM2 Rabggta-205ENSMUST00000227061 2882 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
Cdk5rap3Q99LM2 Lmnb2-202ENSMUST00000105332 1643 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Cdk5rap3Q99LM2 Pigb-207ENSMUST00000184389 2079 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Cdk5rap3Q99LM2 Rnf138-202ENSMUST00000072847 3002 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Cdk5rap3Q99LM2 Dhodh-209ENSMUST00000143900 1455 ntTSL 5 BASIC16.29■□□□□ 0.2
Cdk5rap3Q99LM2 Espnl-202ENSMUST00000176156 2886 ntTSL 5 BASIC16.29■□□□□ 0.2
Cdk5rap3Q99LM2 Tex264-201ENSMUST00000046735 1391 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Cdk5rap3Q99LM2 Hist1h2bf-201ENSMUST00000105106 461 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
Cdk5rap3Q99LM2 Gng2-202ENSMUST00000159028 458 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
Cdk5rap3Q99LM2 Gm17178-201ENSMUST00000163273 357 ntTSL 5 BASIC16.29■□□□□ 0.2
Cdk5rap3Q99LM2 Kiss1r-202ENSMUST00000219745 979 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Cdk5rap3Q99LM2 Kif22-201ENSMUST00000032915 2115 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Cdk5rap3Q99LM2 Spsb2-202ENSMUST00000052727 1219 ntAPPRIS P1 TSL 3 BASIC16.29■□□□□ 0.2
Cdk5rap3Q99LM2 Sgms1-201ENSMUST00000099514 3665 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Cdk5rap3Q99LM2 Ankle2-206ENSMUST00000197188 4077 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
Cdk5rap3Q99LM2 Hmbs-201ENSMUST00000077353 1605 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Cdk5rap3Q99LM2 Rfx5-202ENSMUST00000107253 4367 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Cdk5rap3Q99LM2 Pdia3-201ENSMUST00000028683 2770 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Cdk5rap3Q99LM2 Gm128-201ENSMUST00000090815 1959 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Cdk5rap3Q99LM2 Acot4-201ENSMUST00000021652 6203 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Cdk5rap3Q99LM2 Ube2d3-212ENSMUST00000197859 3833 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Cdk5rap3Q99LM2 Nap1l4-209ENSMUST00000209098 2281 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Cdk5rap3Q99LM2 Rnf121-202ENSMUST00000096639 2249 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Cdk5rap3Q99LM2 Snn-201ENSMUST00000089011 2902 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Cdk5rap3Q99LM2 Plscr3-202ENSMUST00000108632 1835 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Cdk5rap3Q99LM2 Fam78b-206ENSMUST00000190081 4666 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Cdk5rap3Q99LM2 Coq6-202ENSMUST00000110276 1776 ntAPPRIS P2 TSL 5 BASIC16.28■□□□□ 0.2
Cdk5rap3Q99LM2 Gnas-211ENSMUST00000109096 2465 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Cdk5rap3Q99LM2 Sybu-202ENSMUST00000110267 3127 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Cdk5rap3Q99LM2 Mdp1-201ENSMUST00000002400 1733 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Cdk5rap3Q99LM2 Fam174b-201ENSMUST00000107456 2683 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Cdk5rap3Q99LM2 Kri1-201ENSMUST00000038671 2598 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Cdk5rap3Q99LM2 Arnt-204ENSMUST00000107160 783 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Cdk5rap3Q99LM2 Hotairm1-202ENSMUST00000132559 713 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Cdk5rap3Q99LM2 Gm6623-201ENSMUST00000173570 544 ntBASIC16.28■□□□□ 0.2
Cdk5rap3Q99LM2 Gm26879-201ENSMUST00000181127 1176 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Cdk5rap3Q99LM2 Gm37280-201ENSMUST00000194583 375 ntTSL 3 BASIC16.28■□□□□ 0.2
Cdk5rap3Q99LM2 Grtp1-204ENSMUST00000209691 1030 ntTSL 5 BASIC16.28■□□□□ 0.2
Cdk5rap3Q99LM2 Uchl3-201ENSMUST00000002289 903 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Cdk5rap3Q99LM2 Fbxo31-201ENSMUST00000059018 4358 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Cdk5rap3Q99LM2 Gadd45gip1-201ENSMUST00000036734 2494 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Cdk5rap3Q99LM2 Asl-205ENSMUST00000161094 1824 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Cdk5rap3Q99LM2 Mettl7a2-202ENSMUST00000176287 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Cdk5rap3Q99LM2 Mettl7a2-201ENSMUST00000088142 1800 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Cdk5rap3Q99LM2 Fbxo34-201ENSMUST00000043112 2937 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
Cdk5rap3Q99LM2 Slc5a5-201ENSMUST00000000809 2928 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Cdk5rap3Q99LM2 Gna15-201ENSMUST00000043709 1962 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Cdk5rap3Q99LM2 Tyk2-205ENSMUST00000214864 1662 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
Cdk5rap3Q99LM2 Psmd6-201ENSMUST00000022256 1387 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Cdk5rap3Q99LM2 A330040F15Rik-202ENSMUST00000224046 1918 ntBASIC16.27■□□□□ 0.2
Cdk5rap3Q99LM2 Gprin1-201ENSMUST00000099506 4141 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Cdk5rap3Q99LM2 Esr1-202ENSMUST00000105588 2733 ntTSL 5 BASIC16.27■□□□□ 0.2
Cdk5rap3Q99LM2 Insc-201ENSMUST00000117543 2170 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.2
Cdk5rap3Q99LM2 Arhgef12-202ENSMUST00000165665 10752 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.2
Cdk5rap3Q99LM2 Mastl-201ENSMUST00000028119 5590 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Cdk5rap3Q99LM2 Hes6-201ENSMUST00000086851 1335 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Cdk5rap3Q99LM2 Sox13-205ENSMUST00000153799 3693 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.2
Cdk5rap3Q99LM2 Hmgn2-204ENSMUST00000105893 973 ntTSL 3 BASIC16.27■□□□□ 0.2
Cdk5rap3Q99LM2 2410004I01Rik-201ENSMUST00000138424 1187 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
Cdk5rap3Q99LM2 E2f7-205ENSMUST00000173634 827 ntTSL 2 BASIC16.27■□□□□ 0.2
Cdk5rap3Q99LM2 Krtap5-1-202ENSMUST00000188274 742 ntBASIC16.27■□□□□ 0.2
Cdk5rap3Q99LM2 Gm38282-201ENSMUST00000192751 695 ntTSL 5 BASIC16.27■□□□□ 0.2
Cdk5rap3Q99LM2 Dcxr-201ENSMUST00000026144 892 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Cdk5rap3Q99LM2 Kazn-201ENSMUST00000036476 3843 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.2
Cdk5rap3Q99LM2 Coa6-201ENSMUST00000059093 747 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Cdk5rap3Q99LM2 Olfr601-201ENSMUST00000080474 990 ntAPPRIS P1 BASIC16.27■□□□□ 0.2
Cdk5rap3Q99LM2 Usf3-201ENSMUST00000088356 757 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.2
Cdk5rap3Q99LM2 Gck-202ENSMUST00000109822 1786 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
Cdk5rap3Q99LM2 Aaed1-207ENSMUST00000222570 3011 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Cdk5rap3Q99LM2 Grin3b-201ENSMUST00000045085 3283 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Cdk5rap3Q99LM2 Dclk2-201ENSMUST00000029719 4012 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.2
Cdk5rap3Q99LM2 Tbx3-202ENSMUST00000079719 4982 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Cdk5rap3Q99LM2 Pth1r-204ENSMUST00000198865 2201 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Cdk5rap3Q99LM2 Tnfrsf13c-202ENSMUST00000109535 1983 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.19
Cdk5rap3Q99LM2 Matk-203ENSMUST00000119547 1916 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.19
Cdk5rap3Q99LM2 Thop1-201ENSMUST00000005057 2832 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Cdk5rap3Q99LM2 Selplg-201ENSMUST00000100874 1855 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Cdk5rap3Q99LM2 Msl2-201ENSMUST00000085177 4889 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Cdk5rap3Q99LM2 Utp3-201ENSMUST00000090413 1629 ntAPPRIS P1 BASIC16.27■□□□□ 0.19
Cdk5rap3Q99LM2 Ubl7-201ENSMUST00000163329 1364 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
Cdk5rap3Q99LM2 Dusp12-201ENSMUST00000027970 1374 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Retrieved 100 of 76,532 protein–RNA pairs in 21.7 ms