Protein–RNA interactions for Protein: Q8CFK2

Brf1, Transcription factor IIIB 90 kDa subunit, mousemouse

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Brf1Q8CFK2 Fam110a-201ENSMUST00000062047 1754 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Brf1Q8CFK2 Tmem57-201ENSMUST00000030628 3826 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Brf1Q8CFK2 Galnt13-204ENSMUST00000112636 7530 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Brf1Q8CFK2 Nrbf2-201ENSMUST00000077839 1813 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Brf1Q8CFK2 Mansc4-201ENSMUST00000100780 1125 ntAPPRIS P2 TSL 1 (best) BASIC18.96■□□□□ 0.63
Brf1Q8CFK2 4933405L10Rik-201ENSMUST00000013302 1214 ntAPPRIS P2 TSL 1 (best) BASIC18.96■□□□□ 0.63
Brf1Q8CFK2 Ffar2-203ENSMUST00000168528 1210 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Brf1Q8CFK2 Pmf1-205ENSMUST00000193338 795 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
Brf1Q8CFK2 AC127302.2-201ENSMUST00000215212 268 ntBASIC18.96■□□□□ 0.63
Brf1Q8CFK2 Rfesd-203ENSMUST00000179078 1436 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Brf1Q8CFK2 Cd151-203ENSMUST00000177840 1708 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
Brf1Q8CFK2 Ccdc71l-201ENSMUST00000172332 4240 ntAPPRIS P1 BASIC18.96■□□□□ 0.63
Brf1Q8CFK2 Ubr3-202ENSMUST00000112251 8081 ntAPPRIS ALT2 TSL 5 BASIC18.96■□□□□ 0.63
Brf1Q8CFK2 Rabl2-201ENSMUST00000023294 1640 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Brf1Q8CFK2 Dhfr-201ENSMUST00000022218 5347 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Brf1Q8CFK2 Hbegf-201ENSMUST00000025363 2373 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Brf1Q8CFK2 Snx17-201ENSMUST00000031029 2018 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Brf1Q8CFK2 Lbp-201ENSMUST00000016168 2525 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Brf1Q8CFK2 Entpd6-201ENSMUST00000094467 2540 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Brf1Q8CFK2 Hist1h4k-201ENSMUST00000102983 312 ntAPPRIS P1 BASIC18.95■□□□□ 0.62
Brf1Q8CFK2 Gm20478-201ENSMUST00000173648 1031 ntTSL 3 BASIC18.95■□□□□ 0.62
Brf1Q8CFK2 AC159301.1-201ENSMUST00000225130 1182 ntBASIC18.95■□□□□ 0.62
Brf1Q8CFK2 Rnf14-203ENSMUST00000171461 3351 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Brf1Q8CFK2 Sema6b-201ENSMUST00000001256 3736 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Brf1Q8CFK2 Slc6a17-208ENSMUST00000169449 6322 ntAPPRIS ALT1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Brf1Q8CFK2 Slc6a17-201ENSMUST00000029499 6308 ntAPPRIS P3 TSL 1 (best) BASIC18.95■□□□□ 0.62
Brf1Q8CFK2 Cbx8-201ENSMUST00000026663 3580 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Brf1Q8CFK2 Grk6-207ENSMUST00000225925 2769 ntBASIC18.95■□□□□ 0.62
Brf1Q8CFK2 Fut7-203ENSMUST00000114278 1990 ntAPPRIS P3 TSL 1 (best) BASIC18.95■□□□□ 0.62
Brf1Q8CFK2 Fut7-201ENSMUST00000041654 1970 ntAPPRIS P3 TSL 5 BASIC18.95■□□□□ 0.62
Brf1Q8CFK2 Cyp26b1-203ENSMUST00000204109 1340 ntTSL 5 BASIC18.95■□□□□ 0.62
Brf1Q8CFK2 Itga5-201ENSMUST00000023128 4382 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Brf1Q8CFK2 Hoxb5-201ENSMUST00000049272 1895 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Brf1Q8CFK2 Tmem119-201ENSMUST00000067853 2242 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Brf1Q8CFK2 Emx2-201ENSMUST00000062216 2916 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Brf1Q8CFK2 Cnot10-206ENSMUST00000216785 1723 ntTSL 5 BASIC18.94■□□□□ 0.62
Brf1Q8CFK2 AC131104.1-201ENSMUST00000222118 1739 ntTSL 5 BASIC18.94■□□□□ 0.62
Brf1Q8CFK2 Cdyl2-201ENSMUST00000109102 2411 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Brf1Q8CFK2 Wipi1-201ENSMUST00000047186 3338 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
Brf1Q8CFK2 Fam222b-202ENSMUST00000100782 2473 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
Brf1Q8CFK2 Asf1b-201ENSMUST00000005607 1788 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Brf1Q8CFK2 Gm19684-201ENSMUST00000173128 1611 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Brf1Q8CFK2 Tcf24-202ENSMUST00000185184 4193 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
Brf1Q8CFK2 Ddit4l-201ENSMUST00000053855 2722 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Brf1Q8CFK2 Tsen15-201ENSMUST00000015124 1133 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Brf1Q8CFK2 Rbfox2-207ENSMUST00000227533 1041 ntBASIC18.94■□□□□ 0.62
Brf1Q8CFK2 Rhebl1-201ENSMUST00000024518 1185 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Brf1Q8CFK2 Acyp2-201ENSMUST00000074613 863 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Brf1Q8CFK2 Gps1-202ENSMUST00000116305 1827 ntAPPRIS P2 TSL 1 (best) BASIC18.94■□□□□ 0.62
Brf1Q8CFK2 Klf7-201ENSMUST00000055001 1477 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
Brf1Q8CFK2 Celf1-201ENSMUST00000005643 4830 ntAPPRIS P4 TSL 5 BASIC18.94■□□□□ 0.62
Brf1Q8CFK2 Dlgap1-201ENSMUST00000060072 5420 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
Brf1Q8CFK2 Pex5l-206ENSMUST00000108226 2632 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
Brf1Q8CFK2 I0C0044D17Rik-201ENSMUST00000097964 2264 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Brf1Q8CFK2 Gadd45gip1-201ENSMUST00000036734 2494 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Brf1Q8CFK2 Iqck-201ENSMUST00000098087 1503 ntAPPRIS ALT2 TSL 5 BASIC18.94■□□□□ 0.62
Brf1Q8CFK2 Mau2-204ENSMUST00000212308 2887 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
Brf1Q8CFK2 Flot1-209ENSMUST00000174080 1383 ntTSL 5 BASIC18.93■□□□□ 0.62
Brf1Q8CFK2 Gm5837-201ENSMUST00000191844 1369 ntBASIC18.93■□□□□ 0.62
Brf1Q8CFK2 Cdkn1b-203ENSMUST00000204807 1757 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
Brf1Q8CFK2 Gm36447-201ENSMUST00000201101 1978 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
Brf1Q8CFK2 4931440P22Rik-202ENSMUST00000147424 2430 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
Brf1Q8CFK2 Wac-215ENSMUST00000171042 2205 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
Brf1Q8CFK2 Smpd4-221ENSMUST00000170996 1619 ntTSL 5 BASIC18.93■□□□□ 0.62
Brf1Q8CFK2 Gm7669-201ENSMUST00000210184 1603 ntBASIC18.93■□□□□ 0.62
Brf1Q8CFK2 Terf1-203ENSMUST00000188371 2268 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Brf1Q8CFK2 Casp2-201ENSMUST00000031895 3529 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Brf1Q8CFK2 Adipor1-201ENSMUST00000027727 3123 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Brf1Q8CFK2 Cacna1b-204ENSMUST00000102939 9736 ntAPPRIS ALT2 TSL 5 BASIC18.93■□□□□ 0.62
Brf1Q8CFK2 Gm42901-201ENSMUST00000197735 3171 ntBASIC18.93■□□□□ 0.62
Brf1Q8CFK2 Gm7153-201ENSMUST00000117092 455 ntBASIC18.93■□□□□ 0.62
Brf1Q8CFK2 Gm12480-201ENSMUST00000129576 774 ntTSL 3 BASIC18.93■□□□□ 0.62
Brf1Q8CFK2 Nabp2-204ENSMUST00000166608 979 ntTSL 5 BASIC18.93■□□□□ 0.62
Brf1Q8CFK2 Med26-201ENSMUST00000058534 2997 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Brf1Q8CFK2 Cstf2-201ENSMUST00000033609 4502 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Brf1Q8CFK2 Ftsj1-202ENSMUST00000115594 1529 ntTSL 5 BASIC18.93■□□□□ 0.62
Brf1Q8CFK2 Aqp5-202ENSMUST00000169082 1551 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Brf1Q8CFK2 Rwdd2b-201ENSMUST00000039101 2009 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Brf1Q8CFK2 Sdc1-205ENSMUST00000171158 2311 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Brf1Q8CFK2 Mboat7-201ENSMUST00000038608 2878 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Brf1Q8CFK2 Tcp11-202ENSMUST00000043925 1746 ntAPPRIS ALT2 TSL 5 BASIC18.92■□□□□ 0.62
Brf1Q8CFK2 Dpagt1-201ENSMUST00000054708 2205 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Brf1Q8CFK2 Srpr-201ENSMUST00000034541 2993 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Brf1Q8CFK2 Ret-202ENSMUST00000088790 4497 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
Brf1Q8CFK2 Gata5-201ENSMUST00000015771 3277 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Brf1Q8CFK2 Fam185a-201ENSMUST00000056045 3027 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Brf1Q8CFK2 Bicd2-201ENSMUST00000048544 6309 ntAPPRIS P4 TSL 1 (best) BASIC18.92■□□□□ 0.62
Brf1Q8CFK2 Stard7-201ENSMUST00000110374 1530 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
Brf1Q8CFK2 Pdcd6-201ENSMUST00000022060 1131 ntAPPRIS P2 TSL 1 (best) BASIC18.92■□□□□ 0.62
Brf1Q8CFK2 Prdx6-201ENSMUST00000051925 959 ntTSL 2 BASIC18.92■□□□□ 0.62
Brf1Q8CFK2 Prr23a3-201ENSMUST00000167951 1817 ntAPPRIS P1 BASIC18.92■□□□□ 0.62
Brf1Q8CFK2 Ric1-201ENSMUST00000043610 7190 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
Brf1Q8CFK2 Spdya-204ENSMUST00000167641 1891 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
Brf1Q8CFK2 Ptprt-201ENSMUST00000109441 6623 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
Brf1Q8CFK2 Kcnj6-202ENSMUST00000099508 3086 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Brf1Q8CFK2 A830009L08Rik-201ENSMUST00000181054 2807 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
Brf1Q8CFK2 Vcan-201ENSMUST00000109543 2321 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Brf1Q8CFK2 Denr-201ENSMUST00000023869 2339 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Brf1Q8CFK2 Camsap3-201ENSMUST00000057028 4450 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
Brf1Q8CFK2 B4galt2-203ENSMUST00000106421 1801 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Retrieved 100 of 76,532 protein–RNA pairs in 21.8 ms