Protein–RNA interactions for Protein: Q8BI79

Ccdc40, Coiled-coil domain-containing protein 40, mousemouse

Predictions only

Length 1,192 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc40Q8BI79 Snhg4-201ENSMUST00000181664 1190 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Ccdc40Q8BI79 Odf3b-201ENSMUST00000049968 1040 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Ccdc40Q8BI79 Rpl21-202ENSMUST00000075453 899 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Ccdc40Q8BI79 Hist1h3g-201ENSMUST00000080859 530 ntAPPRIS P1 BASIC16.42■□□□□ 0.22
Ccdc40Q8BI79 Fthl17f-201ENSMUST00000097029 847 ntAPPRIS P1 BASIC16.42■□□□□ 0.22
Ccdc40Q8BI79 Ralgapa1-201ENSMUST00000085385 7901 ntAPPRIS P2 TSL 1 (best) BASIC16.42■□□□□ 0.22
Ccdc40Q8BI79 Tyk2-205ENSMUST00000214864 1662 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Ccdc40Q8BI79 Sil1-201ENSMUST00000025215 1695 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Ccdc40Q8BI79 Mcc-202ENSMUST00000164666 3606 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Ccdc40Q8BI79 Snrpd2-201ENSMUST00000049294 1420 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Ccdc40Q8BI79 Pqlc1-205ENSMUST00000131780 2080 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
Ccdc40Q8BI79 Casq1-201ENSMUST00000003554 1847 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Ccdc40Q8BI79 Fip1l1-203ENSMUST00000113535 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
Ccdc40Q8BI79 Mta1-203ENSMUST00000109723 2790 ntAPPRIS ALT2 TSL 5 BASIC16.42■□□□□ 0.22
Ccdc40Q8BI79 Mta1-204ENSMUST00000109726 2775 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
Ccdc40Q8BI79 Mta1-205ENSMUST00000109727 2789 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
Ccdc40Q8BI79 Pfkfb4-201ENSMUST00000051873 3316 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Ccdc40Q8BI79 Golph3-201ENSMUST00000059680 2652 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Ccdc40Q8BI79 Tcf25-205ENSMUST00000212470 2572 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Ccdc40Q8BI79 Mfsd10-203ENSMUST00000114331 1754 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Ccdc40Q8BI79 Arhgef1-218ENSMUST00000206508 3195 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Ccdc40Q8BI79 Tmx4-203ENSMUST00000110120 2602 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Ccdc40Q8BI79 Tmem229b-201ENSMUST00000056660 3860 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Ccdc40Q8BI79 Ttc13-210ENSMUST00000214828 3301 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
Ccdc40Q8BI79 Bud23-202ENSMUST00000085984 1516 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Ccdc40Q8BI79 Pdia3-201ENSMUST00000028683 2770 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Ccdc40Q8BI79 Acss1-201ENSMUST00000028944 3618 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Ccdc40Q8BI79 Zc3h14-204ENSMUST00000110105 3514 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Ccdc40Q8BI79 Naa10-204ENSMUST00000114389 1031 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Ccdc40Q8BI79 Smim1-205ENSMUST00000131325 842 ntTSL 5 BASIC16.41■□□□□ 0.22
Ccdc40Q8BI79 Rerg-204ENSMUST00000149100 635 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Ccdc40Q8BI79 Gm29518-201ENSMUST00000190858 372 ntBASIC16.41■□□□□ 0.22
Ccdc40Q8BI79 Ighv6-1-201ENSMUST00000193612 343 ntBASIC16.41■□□□□ 0.22
Ccdc40Q8BI79 CT009713.7-201ENSMUST00000224689 571 ntBASIC16.41■□□□□ 0.22
Ccdc40Q8BI79 Nagpa-201ENSMUST00000023911 2143 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Ccdc40Q8BI79 Prima1-201ENSMUST00000074416 909 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Ccdc40Q8BI79 C1qbp-201ENSMUST00000078528 1175 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Ccdc40Q8BI79 Sf1-203ENSMUST00000113488 2282 ntTSL 5 BASIC16.41■□□□□ 0.22
Ccdc40Q8BI79 Psen2-203ENSMUST00000111105 1575 ntAPPRIS P2 TSL 5 BASIC16.41■□□□□ 0.22
Ccdc40Q8BI79 Plxnc1-201ENSMUST00000099337 7302 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Ccdc40Q8BI79 Chga-201ENSMUST00000021610 1883 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Ccdc40Q8BI79 Capn15-205ENSMUST00000212520 5216 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Ccdc40Q8BI79 Ckap4-201ENSMUST00000053871 3089 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Ccdc40Q8BI79 Derl3-201ENSMUST00000009236 1321 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Ccdc40Q8BI79 Sfmbt1-201ENSMUST00000054230 7837 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
Ccdc40Q8BI79 Slc4a5-203ENSMUST00000113900 3630 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
Ccdc40Q8BI79 Rab11b-203ENSMUST00000173860 1544 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Ccdc40Q8BI79 Gm13425-201ENSMUST00000145389 5391 ntTSL 3 BASIC16.4■□□□□ 0.22
Ccdc40Q8BI79 Rspry1-202ENSMUST00000121101 3092 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Ccdc40Q8BI79 Top3b-201ENSMUST00000023465 3073 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Ccdc40Q8BI79 Gpd2-202ENSMUST00000112618 5759 ntTSL 5 BASIC16.4■□□□□ 0.22
Ccdc40Q8BI79 Lce1j-201ENSMUST00000107304 420 ntAPPRIS P1 BASIC16.4■□□□□ 0.22
Ccdc40Q8BI79 Mzt2-202ENSMUST00000117136 758 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Ccdc40Q8BI79 Lyzl4-202ENSMUST00000120918 959 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Ccdc40Q8BI79 Cdpf1-204ENSMUST00000144067 761 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
Ccdc40Q8BI79 Pqlc1-208ENSMUST00000144468 1050 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Ccdc40Q8BI79 A430033K04Rik-204ENSMUST00000200521 1110 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Ccdc40Q8BI79 F420014N23Rik-202ENSMUST00000219079 659 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Ccdc40Q8BI79 A430033K04Rik-201ENSMUST00000032590 1109 ntTSL 5 BASIC16.4■□□□□ 0.22
Ccdc40Q8BI79 Prss27-201ENSMUST00000059482 1253 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Ccdc40Q8BI79 Lrp11-201ENSMUST00000019931 3386 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
Ccdc40Q8BI79 Gm5934-201ENSMUST00000120734 2588 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
Ccdc40Q8BI79 Gm45723-201ENSMUST00000212135 1783 ntTSL 5 BASIC16.4■□□□□ 0.22
Ccdc40Q8BI79 Mamstr-201ENSMUST00000148532 1606 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Ccdc40Q8BI79 Slc7a7-206ENSMUST00000197440 2278 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Ccdc40Q8BI79 Prrg3-203ENSMUST00000170096 3408 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Ccdc40Q8BI79 Chd4-202ENSMUST00000112390 6537 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
Ccdc40Q8BI79 Ppp2r2a-204ENSMUST00000225380 1988 ntBASIC16.4■□□□□ 0.22
Ccdc40Q8BI79 1810041L15Rik-203ENSMUST00000189248 5296 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Ccdc40Q8BI79 1300014J16Rik-201ENSMUST00000219015 1337 ntBASIC16.4■□□□□ 0.22
Ccdc40Q8BI79 Dnajc7-201ENSMUST00000014339 2330 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Ccdc40Q8BI79 Ppp1r37-201ENSMUST00000058444 3816 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Ccdc40Q8BI79 Hnf1b-203ENSMUST00000108114 2659 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Ccdc40Q8BI79 AC132265.1-201ENSMUST00000219233 1665 ntBASIC16.4■□□□□ 0.22
Ccdc40Q8BI79 Tmem5-205ENSMUST00000140299 4793 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.22
Ccdc40Q8BI79 Lurap1l-201ENSMUST00000055922 3066 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.22
Ccdc40Q8BI79 Taf6l-206ENSMUST00000176610 2203 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.22
Ccdc40Q8BI79 Rhot1-203ENSMUST00000077451 3297 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
Ccdc40Q8BI79 Vmn1r17-204ENSMUST00000228294 2084 ntAPPRIS ALT2 BASIC16.39■□□□□ 0.21
Ccdc40Q8BI79 Ttll5-201ENSMUST00000040179 5081 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
Ccdc40Q8BI79 Acd-201ENSMUST00000042608 3154 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Ccdc40Q8BI79 Tm6sf2-202ENSMUST00000110160 1446 ntAPPRIS ALT1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Ccdc40Q8BI79 Bnipl-201ENSMUST00000098871 1414 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Ccdc40Q8BI79 Pgap2-203ENSMUST00000120119 1979 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Ccdc40Q8BI79 Ptprt-202ENSMUST00000109442 7719 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
Ccdc40Q8BI79 Adam15-204ENSMUST00000107448 2893 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
Ccdc40Q8BI79 Pskh1-201ENSMUST00000049699 3255 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Ccdc40Q8BI79 Nxt1-202ENSMUST00000109961 1116 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
Ccdc40Q8BI79 Bhlhe41-202ENSMUST00000111703 744 ntTSL 3 BASIC16.39■□□□□ 0.21
Ccdc40Q8BI79 Fgf8-205ENSMUST00000111927 843 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
Ccdc40Q8BI79 Lcn12-202ENSMUST00000114245 619 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
Ccdc40Q8BI79 Gm15138-201ENSMUST00000151778 379 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Ccdc40Q8BI79 Flg-207ENSMUST00000180293 768 ntAPPRIS ALT2 BASIC16.39■□□□□ 0.21
Ccdc40Q8BI79 AC114585.2-202ENSMUST00000228094 426 ntBASIC16.39■□□□□ 0.21
Ccdc40Q8BI79 Npcd-201ENSMUST00000023060 1162 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
Ccdc40Q8BI79 Nxt1-201ENSMUST00000047177 956 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Ccdc40Q8BI79 Gmnn-201ENSMUST00000006898 1127 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Ccdc40Q8BI79 Rplp2-201ENSMUST00000084434 964 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Ccdc40Q8BI79 Ptch1-201ENSMUST00000021921 7725 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
Ccdc40Q8BI79 Ogfrl1-201ENSMUST00000027343 4844 ntAPPRIS P1 TSL 3 BASIC16.39■□□□□ 0.21
Retrieved 100 of 76,532 protein–RNA pairs in 30.5 ms