Protein–RNA interactions for Protein: Q6P9L4

Usp49, Ubiquitin carboxyl-terminal hydrolase 49, mousemouse

Predictions only

Length 685 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp49Q6P9L4 Dzip3-202ENSMUST00000121869 5820 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
Usp49Q6P9L4 Pitpna-206ENSMUST00000179521 3727 ntAPPRIS ALT1 TSL 5 BASIC17.6■□□□□ 0.41
Usp49Q6P9L4 BC048679-202ENSMUST00000144156 640 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
Usp49Q6P9L4 Gm28051-201ENSMUST00000179306 445 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
Usp49Q6P9L4 Samd13-205ENSMUST00000197989 591 ntTSL 5 BASIC17.6■□□□□ 0.41
Usp49Q6P9L4 Hs3st2-202ENSMUST00000206880 1149 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Usp49Q6P9L4 Ten1-201ENSMUST00000021130 902 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Usp49Q6P9L4 Bcl2l12-201ENSMUST00000003290 1075 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
Usp49Q6P9L4 Pmm1-201ENSMUST00000023112 1300 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Usp49Q6P9L4 Plpbp-202ENSMUST00000098851 1368 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Usp49Q6P9L4 Celf1-206ENSMUST00000111451 4678 ntAPPRIS ALT1 TSL 5 BASIC17.6■□□□□ 0.41
Usp49Q6P9L4 CT010456.1-201ENSMUST00000222465 1688 ntTSL 5 BASIC17.6■□□□□ 0.41
Usp49Q6P9L4 1810041L15Rik-203ENSMUST00000189248 5296 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Usp49Q6P9L4 Cacna2d2-203ENSMUST00000164988 5542 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
Usp49Q6P9L4 Sf3b4-201ENSMUST00000076372 1915 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Usp49Q6P9L4 BC037039-201ENSMUST00000192003 2205 ntBASIC17.6■□□□□ 0.41
Usp49Q6P9L4 Robo3-202ENSMUST00000115038 4797 ntAPPRIS P2 TSL 5 BASIC17.6■□□□□ 0.41
Usp49Q6P9L4 Lonrf2-202ENSMUST00000147695 6932 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
Usp49Q6P9L4 Cmtm4-201ENSMUST00000179802 7734 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Usp49Q6P9L4 Stam-202ENSMUST00000102960 5000 ntAPPRIS P2 TSL 1 (best) BASIC17.59■□□□□ 0.41
Usp49Q6P9L4 Rtn1-202ENSMUST00000078505 3629 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Usp49Q6P9L4 Capn1-201ENSMUST00000025891 3100 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Usp49Q6P9L4 Enah-204ENSMUST00000111030 2844 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
Usp49Q6P9L4 Khdc1c-201ENSMUST00000070223 1946 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Usp49Q6P9L4 Rnf220-203ENSMUST00000102690 1842 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Usp49Q6P9L4 Tnip2-203ENSMUST00000114359 1642 ntTSL 5 BASIC17.59■□□□□ 0.41
Usp49Q6P9L4 Rabl2-201ENSMUST00000023294 1640 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Usp49Q6P9L4 Cacna1a-202ENSMUST00000122053 7589 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
Usp49Q6P9L4 Rfx5-201ENSMUST00000029772 4189 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Usp49Q6P9L4 Gm12355-201ENSMUST00000104933 1311 ntAPPRIS P1 BASIC17.59■□□□□ 0.41
Usp49Q6P9L4 Gm15372-201ENSMUST00000120729 834 ntBASIC17.59■□□□□ 0.41
Usp49Q6P9L4 Ffar2-203ENSMUST00000168528 1210 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Usp49Q6P9L4 C130032M10Rik-201ENSMUST00000180393 728 ntAPPRIS P1 BASIC17.59■□□□□ 0.41
Usp49Q6P9L4 AL669916.2-201ENSMUST00000213219 358 ntTSL 2 BASIC17.59■□□□□ 0.41
Usp49Q6P9L4 Gm9857-201ENSMUST00000050914 393 ntAPPRIS P1 BASIC17.59■□□□□ 0.41
Usp49Q6P9L4 AC154412.1-201ENSMUST00000226540 2786 ntBASIC17.59■□□□□ 0.41
Usp49Q6P9L4 Pdia3-201ENSMUST00000028683 2770 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Usp49Q6P9L4 Cxxc5-201ENSMUST00000060722 2271 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Usp49Q6P9L4 Ddx49-201ENSMUST00000008004 2137 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Usp49Q6P9L4 Camk2b-205ENSMUST00000093355 1973 ntTSL 5 BASIC17.59■□□□□ 0.41
Usp49Q6P9L4 Miip-206ENSMUST00000172710 1769 ntAPPRIS P2 TSL 5 BASIC17.58■□□□□ 0.41
Usp49Q6P9L4 Mdp1-201ENSMUST00000002400 1733 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
Usp49Q6P9L4 Crebbp-201ENSMUST00000023165 10820 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.41
Usp49Q6P9L4 Inpp5f-201ENSMUST00000043138 4734 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
Usp49Q6P9L4 Cacna1c-216ENSMUST00000188522 7338 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.41
Usp49Q6P9L4 Pcdhgc4-203ENSMUST00000195239 2272 ntTSL 3 BASIC17.58■□□□□ 0.4
Usp49Q6P9L4 Ppp3cb-201ENSMUST00000022355 3074 ntAPPRIS ALT1 TSL 5 BASIC17.58■□□□□ 0.4
Usp49Q6P9L4 Kcnq4-201ENSMUST00000030376 3919 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.4
Usp49Q6P9L4 Bend4-204ENSMUST00000201972 8268 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.4
Usp49Q6P9L4 Tpm3-202ENSMUST00000118566 2190 ntTSL 5 BASIC17.58■□□□□ 0.4
Usp49Q6P9L4 Krtap1-4-201ENSMUST00000100479 593 ntAPPRIS P1 BASIC17.58■□□□□ 0.4
Usp49Q6P9L4 Rasl2-9-201ENSMUST00000147835 1013 ntAPPRIS P1 BASIC17.58■□□□□ 0.4
Usp49Q6P9L4 Gm15246-201ENSMUST00000149873 540 ntTSL 3 BASIC17.58■□□□□ 0.4
Usp49Q6P9L4 Erdr1-203ENSMUST00000179077 887 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.4
Usp49Q6P9L4 0610025J13Rik-203ENSMUST00000180374 713 ntTSL 5 BASIC17.58■□□□□ 0.4
Usp49Q6P9L4 AC108846.1-201ENSMUST00000214531 513 ntBASIC17.58■□□□□ 0.4
Usp49Q6P9L4 Slc35d2-204ENSMUST00000222168 472 ntTSL 3 BASIC17.58■□□□□ 0.4
Usp49Q6P9L4 Exoc6-201ENSMUST00000066439 2729 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Usp49Q6P9L4 Zfp422-203ENSMUST00000112880 2523 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Usp49Q6P9L4 Ube3c-201ENSMUST00000049453 5048 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Usp49Q6P9L4 Ercc6l2-202ENSMUST00000021926 1592 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Usp49Q6P9L4 Gm15939-201ENSMUST00000160756 2147 ntTSL 5 BASIC17.57■□□□□ 0.4
Usp49Q6P9L4 Bambi-201ENSMUST00000025075 5040 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Usp49Q6P9L4 Sgpp1-202ENSMUST00000220285 3200 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Usp49Q6P9L4 Mis12-206ENSMUST00000164220 1416 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Usp49Q6P9L4 B3gnt4-201ENSMUST00000031384 1423 ntAPPRIS P1 BASIC17.57■□□□□ 0.4
Usp49Q6P9L4 Eda-202ENSMUST00000113775 5088 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Usp49Q6P9L4 Usp43-202ENSMUST00000108677 4447 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
Usp49Q6P9L4 Nat9-203ENSMUST00000103040 1204 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Usp49Q6P9L4 Nat9-204ENSMUST00000103041 953 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
Usp49Q6P9L4 Blvrb-204ENSMUST00000133750 509 ntTSL 2 BASIC17.57■□□□□ 0.4
Usp49Q6P9L4 1500009L16Rik-201ENSMUST00000150459 1194 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Usp49Q6P9L4 Mthfsl-204ENSMUST00000186863 725 ntTSL 2 BASIC17.57■□□□□ 0.4
Usp49Q6P9L4 Gm9172-201ENSMUST00000212092 954 ntBASIC17.57■□□□□ 0.4
Usp49Q6P9L4 AC133183.1-201ENSMUST00000221229 429 ntAPPRIS P1 TSL 3 BASIC17.57■□□□□ 0.4
Usp49Q6P9L4 AC117588.1-201ENSMUST00000228510 999 ntBASIC17.57■□□□□ 0.4
Usp49Q6P9L4 Pnkp-203ENSMUST00000107876 1770 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Usp49Q6P9L4 Prkcz2-201ENSMUST00000206136 1756 ntBASIC17.57■□□□□ 0.4
Usp49Q6P9L4 Papolb-201ENSMUST00000099400 4239 ntAPPRIS P1 BASIC17.57■□□□□ 0.4
Usp49Q6P9L4 Ttll5-204ENSMUST00000110220 2655 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Usp49Q6P9L4 Samm50-201ENSMUST00000023071 1673 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Usp49Q6P9L4 AL691505.1-201ENSMUST00000219965 1618 ntTSL 5 BASIC17.57■□□□□ 0.4
Usp49Q6P9L4 Hoxb1-201ENSMUST00000019117 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Usp49Q6P9L4 Gm45351-201ENSMUST00000210683 2545 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Usp49Q6P9L4 Dnajc3-201ENSMUST00000022734 5141 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Usp49Q6P9L4 Acp7-201ENSMUST00000040112 1978 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Usp49Q6P9L4 March8-201ENSMUST00000079012 4450 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Usp49Q6P9L4 Ubb-201ENSMUST00000019649 1499 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Usp49Q6P9L4 Sik2-201ENSMUST00000041375 3552 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
Usp49Q6P9L4 Pqlc2-205ENSMUST00000172747 1405 ntAPPRIS P2 TSL 5 BASIC17.56■□□□□ 0.4
Usp49Q6P9L4 Ppil1-201ENSMUST00000024802 1434 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Usp49Q6P9L4 Asl-205ENSMUST00000161094 1824 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Usp49Q6P9L4 Itpkb-201ENSMUST00000070181 6235 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Usp49Q6P9L4 Crhbp-202ENSMUST00000221025 1779 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Usp49Q6P9L4 Mvd-201ENSMUST00000006692 1756 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Usp49Q6P9L4 Ift74-202ENSMUST00000107104 1713 ntTSL 2 BASIC17.56■□□□□ 0.4
Usp49Q6P9L4 Cd151-203ENSMUST00000177840 1708 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
Usp49Q6P9L4 Snx1-201ENSMUST00000034946 2073 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Usp49Q6P9L4 Gm7935-201ENSMUST00000100555 1278 ntBASIC17.56■□□□□ 0.4
Usp49Q6P9L4 1810010H24Rik-201ENSMUST00000106767 1100 ntAPPRIS P2 TSL 2 BASIC17.56■□□□□ 0.4
Retrieved 100 of 76,532 protein–RNA pairs in 50.8 ms