Protein–RNA interactions for Protein: Q5I043

Usp28, Ubiquitin carboxyl-terminal hydrolase 28, mousemouse

Predictions only

Length 1,051 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp28Q5I043 Ndufv2-203ENSMUST00000143987 1540 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Usp28Q5I043 Rab11b-203ENSMUST00000173860 1544 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
Usp28Q5I043 Gm23634-201ENSMUST00000175071 91 ntBASIC17.85■□□□□ 0.45
Usp28Q5I043 Hsd17b1-201ENSMUST00000019445 1339 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Usp28Q5I043 Prkcz2-201ENSMUST00000206136 1756 ntBASIC17.85■□□□□ 0.45
Usp28Q5I043 1700016B15Rik-201ENSMUST00000209027 733 ntBASIC17.85■□□□□ 0.45
Usp28Q5I043 3830406C13Rik-207ENSMUST00000223927 1010 ntBASIC17.85■□□□□ 0.45
Usp28Q5I043 Ifngr2-201ENSMUST00000023687 3254 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Usp28Q5I043 Rhd-201ENSMUST00000030627 1514 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Usp28Q5I043 Mgarp-201ENSMUST00000038154 1232 ntAPPRIS P2 TSL 1 (best) BASIC17.85■□□□□ 0.45
Usp28Q5I043 Fam131c-201ENSMUST00000006380 1433 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Usp28Q5I043 Fgfr1op2-203ENSMUST00000067404 2766 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Usp28Q5I043 Pofut1-203ENSMUST00000099192 1385 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
Usp28Q5I043 Tmpo-201ENSMUST00000020123 3772 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Usp28Q5I043 Anks1-202ENSMUST00000088027 6781 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
Usp28Q5I043 Dtx3-204ENSMUST00000130855 1925 ntAPPRIS ALT1 TSL 5 BASIC17.84■□□□□ 0.45
Usp28Q5I043 Supt5-208ENSMUST00000209141 3755 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Usp28Q5I043 Tacstd2-201ENSMUST00000058178 1735 ntAPPRIS P1 BASIC17.84■□□□□ 0.45
Usp28Q5I043 Hdac2-202ENSMUST00000105510 3250 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Usp28Q5I043 Stk11-202ENSMUST00000105370 1474 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Usp28Q5I043 Rab9-202ENSMUST00000112091 1447 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Usp28Q5I043 Gm8784-201ENSMUST00000222096 1435 ntBASIC17.84■□□□□ 0.45
Usp28Q5I043 Tle2-205ENSMUST00000135211 2746 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
Usp28Q5I043 Narfl-201ENSMUST00000002350 2555 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Usp28Q5I043 AC153794.1-201ENSMUST00000169148 126 ntBASIC17.84■□□□□ 0.45
Usp28Q5I043 Gm20033-201ENSMUST00000180470 572 ntTSL 3 BASIC17.84■□□□□ 0.45
Usp28Q5I043 AC121577.1-201ENSMUST00000227302 707 ntBASIC17.84■□□□□ 0.45
Usp28Q5I043 Bcl2l12-201ENSMUST00000003290 1075 ntAPPRIS P2 TSL 1 (best) BASIC17.84■□□□□ 0.45
Usp28Q5I043 Mmp28-203ENSMUST00000108137 2451 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
Usp28Q5I043 Pacs1-201ENSMUST00000025786 4339 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Usp28Q5I043 Sgpp1-202ENSMUST00000220285 3200 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Usp28Q5I043 Tmem108-204ENSMUST00000189588 2850 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Usp28Q5I043 Slc3a2-202ENSMUST00000170157 2813 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
Usp28Q5I043 Muc3a-201ENSMUST00000179412 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
Usp28Q5I043 Agbl3-205ENSMUST00000115017 3719 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
Usp28Q5I043 Chst13-201ENSMUST00000070890 1653 ntAPPRIS P1 TSL 3 BASIC17.83■□□□□ 0.45
Usp28Q5I043 Cpd-201ENSMUST00000021201 7946 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Usp28Q5I043 Tgfb2-201ENSMUST00000045288 5116 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Usp28Q5I043 Ncf1-205ENSMUST00000144086 2882 ntTSL 2 BASIC17.83■□□□□ 0.45
Usp28Q5I043 Ppil1-201ENSMUST00000024802 1434 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Usp28Q5I043 Gabrb3-201ENSMUST00000039697 5579 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Usp28Q5I043 Magix-201ENSMUST00000115695 1342 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Usp28Q5I043 Stxbp6-201ENSMUST00000053768 4553 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.44
Usp28Q5I043 Hist1h2bj-201ENSMUST00000110452 463 ntAPPRIS P1 BASIC17.83■□□□□ 0.44
Usp28Q5I043 Hist1h2bp-202ENSMUST00000110473 621 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
Usp28Q5I043 Olfr129-201ENSMUST00000122318 993 ntBASIC17.83■□□□□ 0.44
Usp28Q5I043 Hist1h2bm-201ENSMUST00000224651 524 ntAPPRIS P1 BASIC17.83■□□□□ 0.44
Usp28Q5I043 Nudt16l1-201ENSMUST00000050881 1269 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Usp28Q5I043 Ldb3-208ENSMUST00000228044 1883 ntAPPRIS ALT2 BASIC17.83■□□□□ 0.44
Usp28Q5I043 Il10rb-201ENSMUST00000023691 1850 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Usp28Q5I043 Acbd5-203ENSMUST00000114526 3725 ntAPPRIS P4 TSL 1 (best) BASIC17.83■□□□□ 0.44
Usp28Q5I043 Uhmk1-201ENSMUST00000027979 7864 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Usp28Q5I043 Cep152-201ENSMUST00000089776 5768 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Usp28Q5I043 Itpripl2-201ENSMUST00000178344 6865 ntAPPRIS P1 BASIC17.83■□□□□ 0.44
Usp28Q5I043 Dock3-201ENSMUST00000044532 9063 ntAPPRIS P1 TSL 2 BASIC17.83■□□□□ 0.44
Usp28Q5I043 Myo5b-201ENSMUST00000074157 6745 ntAPPRIS P2 TSL 1 (best) BASIC17.83■□□□□ 0.44
Usp28Q5I043 Fam199x-201ENSMUST00000047852 8299 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Usp28Q5I043 Ddit4l-201ENSMUST00000053855 2722 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Usp28Q5I043 Cndp2-201ENSMUST00000025546 2050 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Usp28Q5I043 Jade1-203ENSMUST00000168086 4790 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Usp28Q5I043 Tmed9-201ENSMUST00000109905 1420 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Usp28Q5I043 Itpripl1-201ENSMUST00000110386 1898 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Usp28Q5I043 Slc25a2-201ENSMUST00000058635 1369 ntAPPRIS P1 BASIC17.82■□□□□ 0.44
Usp28Q5I043 Gm6728-201ENSMUST00000178117 1065 ntBASIC17.82■□□□□ 0.44
Usp28Q5I043 Vegfc-203ENSMUST00000210831 555 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Usp28Q5I043 AC127302.2-201ENSMUST00000215212 268 ntBASIC17.82■□□□□ 0.44
Usp28Q5I043 Atp8b1-201ENSMUST00000025482 6440 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Usp28Q5I043 AC174678.1-201ENSMUST00000228007 2749 ntBASIC17.82■□□□□ 0.44
Usp28Q5I043 Cmc2-205ENSMUST00000148235 1459 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Usp28Q5I043 Slc4a5-203ENSMUST00000113900 3630 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
Usp28Q5I043 Zfp703-202ENSMUST00000154256 3152 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Usp28Q5I043 Trpc1-204ENSMUST00000189137 4559 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
Usp28Q5I043 Tesk2-203ENSMUST00000106459 2444 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Usp28Q5I043 Akt2-202ENSMUST00000085917 1392 ntTSL 5 BASIC17.81■□□□□ 0.44
Usp28Q5I043 Fscn1-201ENSMUST00000031565 2675 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Usp28Q5I043 Skor1-201ENSMUST00000055281 3657 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
Usp28Q5I043 Gnat1-201ENSMUST00000010205 2328 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Usp28Q5I043 Pik3ap1-201ENSMUST00000059672 2615 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Usp28Q5I043 Tfeb-201ENSMUST00000024786 2296 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
Usp28Q5I043 Sec61g-206ENSMUST00000166950 754 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Usp28Q5I043 Gm6659-201ENSMUST00000174752 547 ntBASIC17.81■□□□□ 0.44
Usp28Q5I043 Sec61g-207ENSMUST00000178855 779 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Usp28Q5I043 Gm29246-201ENSMUST00000189221 349 ntTSL 3 BASIC17.81■□□□□ 0.44
Usp28Q5I043 Hmgn1-201ENSMUST00000050884 2174 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Usp28Q5I043 Slc45a4-204ENSMUST00000132607 2457 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Usp28Q5I043 Pprc1-203ENSMUST00000111899 5246 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
Usp28Q5I043 Sybu-201ENSMUST00000090057 3230 ntAPPRIS P4 TSL 1 (best) BASIC17.81■□□□□ 0.44
Usp28Q5I043 Kif5b-201ENSMUST00000025083 6032 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Usp28Q5I043 Gm28756-202ENSMUST00000209405 2461 ntTSL 5 BASIC17.8■□□□□ 0.44
Usp28Q5I043 Sf3b4-201ENSMUST00000076372 1915 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Usp28Q5I043 Jmy-201ENSMUST00000065537 8776 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Usp28Q5I043 2810468N07Rik-201ENSMUST00000163493 1349 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Usp28Q5I043 Tal1-201ENSMUST00000030489 4213 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Usp28Q5I043 Spdef-201ENSMUST00000025054 1824 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Usp28Q5I043 Apol8-201ENSMUST00000070911 1838 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
Usp28Q5I043 St6galnac2-201ENSMUST00000079545 3643 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Usp28Q5I043 Hist1h4k-201ENSMUST00000102983 312 ntAPPRIS P1 BASIC17.8■□□□□ 0.44
Usp28Q5I043 Gm13830-201ENSMUST00000124378 417 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Usp28Q5I043 Gm45844-204ENSMUST00000209833 1524 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
Usp28Q5I043 A430035B10Rik-204ENSMUST00000148063 2010 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Retrieved 100 of 76,532 protein–RNA pairs in 20.7 ms