Protein–RNA interactions for Protein: Q3U1J4

Ddb1, DNA damage-binding protein 1, mousemouse

Known RBP Predictions only

Length 1,140 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddb1Q3U1J4 Tmem116-202ENSMUST00000060004 1297 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
Ddb1Q3U1J4 G0s2-201ENSMUST00000009777 871 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Ddb1Q3U1J4 Ttl-201ENSMUST00000035812 4567 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Ddb1Q3U1J4 Gpaa1-201ENSMUST00000023221 2107 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Ddb1Q3U1J4 Grwd1-201ENSMUST00000107723 1898 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Ddb1Q3U1J4 Glra1-203ENSMUST00000108853 1797 ntTSL 5 BASIC19.88■□□□□ 0.77
Ddb1Q3U1J4 9230020A06Rik-203ENSMUST00000214621 1682 ntTSL 5 BASIC19.87■□□□□ 0.77
Ddb1Q3U1J4 AL691505.1-201ENSMUST00000219965 1618 ntTSL 5 BASIC19.87■□□□□ 0.77
Ddb1Q3U1J4 Klhdc10-201ENSMUST00000068240 3951 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
Ddb1Q3U1J4 Sft2d2-201ENSMUST00000043338 5535 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Ddb1Q3U1J4 Ints10-203ENSMUST00000110241 2322 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
Ddb1Q3U1J4 Rusc2-202ENSMUST00000098106 5325 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Ddb1Q3U1J4 Ppp1r9b-201ENSMUST00000038696 4508 ntAPPRIS P2 TSL 1 (best) BASIC19.87■□□□□ 0.77
Ddb1Q3U1J4 Mink1-205ENSMUST00000102559 4865 ntAPPRIS P4 TSL 1 (best) BASIC19.87■□□□□ 0.77
Ddb1Q3U1J4 Gbgt1-203ENSMUST00000163121 1335 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
Ddb1Q3U1J4 Clnkos-201ENSMUST00000114080 439 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
Ddb1Q3U1J4 BC028777-201ENSMUST00000137883 985 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
Ddb1Q3U1J4 Gm5914-202ENSMUST00000182863 375 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
Ddb1Q3U1J4 2410004P03Rik-203ENSMUST00000190691 953 ntTSL 2 BASIC19.87■□□□□ 0.77
Ddb1Q3U1J4 Pomc-201ENSMUST00000020990 1031 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Ddb1Q3U1J4 Lce1g-201ENSMUST00000029527 925 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Ddb1Q3U1J4 Nptx2-201ENSMUST00000071782 2536 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Ddb1Q3U1J4 Nrip2-201ENSMUST00000001561 1893 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Ddb1Q3U1J4 Mtx2-201ENSMUST00000028511 2950 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Ddb1Q3U1J4 Asf1b-201ENSMUST00000005607 1788 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Ddb1Q3U1J4 Rmdn1-201ENSMUST00000029888 1734 ntAPPRIS P2 TSL 1 (best) BASIC19.87■□□□□ 0.77
Ddb1Q3U1J4 E430018J23Rik-201ENSMUST00000074249 2063 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
Ddb1Q3U1J4 Cetn4-205ENSMUST00000140956 2981 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
Ddb1Q3U1J4 Stxbp3-201ENSMUST00000102621 2419 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Ddb1Q3U1J4 Efnb2-201ENSMUST00000001319 4793 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Ddb1Q3U1J4 Sema6c-214ENSMUST00000202315 2843 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.77
Ddb1Q3U1J4 Coq8b-202ENSMUST00000108378 2276 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Ddb1Q3U1J4 Clgn-202ENSMUST00000109831 2293 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Ddb1Q3U1J4 Phf20l1-201ENSMUST00000048188 6670 ntAPPRIS P1 TSL 5 BASIC19.86■□□□□ 0.77
Ddb1Q3U1J4 Umad1-202ENSMUST00000159335 2615 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
Ddb1Q3U1J4 Sept1-201ENSMUST00000106313 1285 ntAPPRIS ALT2 TSL 5 BASIC19.86■□□□□ 0.77
Ddb1Q3U1J4 Nosip-202ENSMUST00000107829 972 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
Ddb1Q3U1J4 Nr2f1-202ENSMUST00000125176 841 ntTSL 5 BASIC19.86■□□□□ 0.77
Ddb1Q3U1J4 Oaz1-203ENSMUST00000179172 744 ntTSL 5 BASIC19.86■□□□□ 0.77
Ddb1Q3U1J4 Gm8318-201ENSMUST00000182954 872 ntBASIC19.86■□□□□ 0.77
Ddb1Q3U1J4 Irs3-202ENSMUST00000196511 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
Ddb1Q3U1J4 5830408C22Rik-201ENSMUST00000210072 1115 ntTSL 5 BASIC19.86■□□□□ 0.77
Ddb1Q3U1J4 Fam162a-201ENSMUST00000004057 635 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Ddb1Q3U1J4 Oaz1-ps-201ENSMUST00000052440 681 ntBASIC19.86■□□□□ 0.77
Ddb1Q3U1J4 Raxos1-201ENSMUST00000181100 2547 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
Ddb1Q3U1J4 Zfp644-205ENSMUST00000112698 5689 ntAPPRIS P2 TSL 5 BASIC19.86■□□□□ 0.77
Ddb1Q3U1J4 Gm26858-201ENSMUST00000180608 2040 ntTSL 5 BASIC19.86■□□□□ 0.77
Ddb1Q3U1J4 Ciz1-201ENSMUST00000048964 2771 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.77
Ddb1Q3U1J4 Reep4-201ENSMUST00000047218 1565 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Ddb1Q3U1J4 Ndor1-202ENSMUST00000114349 2336 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Ddb1Q3U1J4 Pdlim7-206ENSMUST00000131306 1915 ntTSL 2 BASIC19.86■□□□□ 0.77
Ddb1Q3U1J4 Stra8-203ENSMUST00000114999 1455 ntAPPRIS P2 TSL 1 (best) BASIC19.86■□□□□ 0.77
Ddb1Q3U1J4 Gm13517-201ENSMUST00000120782 1495 ntBASIC19.86■□□□□ 0.77
Ddb1Q3U1J4 2810408A11Rik-202ENSMUST00000100969 1437 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
Ddb1Q3U1J4 Sbk2-205ENSMUST00000208109 1422 ntTSL 5 BASIC19.85■□□□□ 0.77
Ddb1Q3U1J4 Gcsh-201ENSMUST00000040484 1443 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Ddb1Q3U1J4 4933415F23Rik-201ENSMUST00000073179 1781 ntAPPRIS P1 BASIC19.85■□□□□ 0.77
Ddb1Q3U1J4 Pdk3-201ENSMUST00000045748 2115 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Ddb1Q3U1J4 Ubap1l-201ENSMUST00000147185 1380 ntAPPRIS P1 TSL 5 BASIC19.85■□□□□ 0.77
Ddb1Q3U1J4 Bnc2-214ENSMUST00000176612 3963 ntTSL 5 BASIC19.85■□□□□ 0.77
Ddb1Q3U1J4 Gm13453-201ENSMUST00000118708 357 ntBASIC19.85■□□□□ 0.77
Ddb1Q3U1J4 4930417O22Rik-201ENSMUST00000123249 1184 ntTSL 2 BASIC19.85■□□□□ 0.77
Ddb1Q3U1J4 Emp3-202ENSMUST00000164119 784 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Ddb1Q3U1J4 Rpl32-202ENSMUST00000203816 906 ntAPPRIS P1 TSL 2 BASIC19.85■□□□□ 0.77
Ddb1Q3U1J4 Dnal1-201ENSMUST00000046340 790 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
Ddb1Q3U1J4 9330160F10Rik-201ENSMUST00000101007 2766 ntBASIC19.85■□□□□ 0.77
Ddb1Q3U1J4 4933426K07Rik-201ENSMUST00000143009 1548 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
Ddb1Q3U1J4 Crocc-203ENSMUST00000102491 6582 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Ddb1Q3U1J4 Ppp2r2a-204ENSMUST00000225380 1988 ntBASIC19.84■□□□□ 0.77
Ddb1Q3U1J4 Gse1-202ENSMUST00000118136 4492 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
Ddb1Q3U1J4 AC130669.1-201ENSMUST00000228537 1672 ntBASIC19.84■□□□□ 0.77
Ddb1Q3U1J4 Cep83-201ENSMUST00000020212 3639 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Ddb1Q3U1J4 Syf2-201ENSMUST00000030622 1369 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Ddb1Q3U1J4 Cdk12-203ENSMUST00000107539 5912 ntAPPRIS ALT2 TSL 5 BASIC19.84■□□□□ 0.77
Ddb1Q3U1J4 Gm5096-201ENSMUST00000091776 1858 ntAPPRIS P1 BASIC19.84■□□□□ 0.77
Ddb1Q3U1J4 Chst8-201ENSMUST00000078686 2372 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Ddb1Q3U1J4 Sept6-203ENSMUST00000115239 1845 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
Ddb1Q3U1J4 Fam217a-204ENSMUST00000225242 1811 ntAPPRIS ALT2 BASIC19.84■□□□□ 0.77
Ddb1Q3U1J4 Rab4a-201ENSMUST00000117702 1080 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Ddb1Q3U1J4 Med22-201ENSMUST00000015920 973 ntAPPRIS P4 TSL 2 BASIC19.84■□□□□ 0.77
Ddb1Q3U1J4 2700012I20Rik-201ENSMUST00000180525 684 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
Ddb1Q3U1J4 Idh2-207ENSMUST00000206714 392 ntTSL 3 BASIC19.84■□□□□ 0.77
Ddb1Q3U1J4 Rbfox2-208ENSMUST00000227930 1218 ntBASIC19.84■□□□□ 0.77
Ddb1Q3U1J4 Alx1-204ENSMUST00000217946 1542 ntTSL 5 BASIC19.84■□□□□ 0.77
Ddb1Q3U1J4 Mef2d-203ENSMUST00000107559 1791 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
Ddb1Q3U1J4 Sptbn4-201ENSMUST00000011895 8747 ntAPPRIS P2 TSL 1 (best) BASIC19.84■□□□□ 0.77
Ddb1Q3U1J4 Fbxl21-201ENSMUST00000045428 1965 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Ddb1Q3U1J4 Fbxo8-202ENSMUST00000110322 1709 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
Ddb1Q3U1J4 Chp2-201ENSMUST00000033152 1456 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Ddb1Q3U1J4 Tmem132e-201ENSMUST00000054245 4386 ntAPPRIS P2 TSL 1 (best) BASIC19.84■□□□□ 0.77
Ddb1Q3U1J4 Rbfox2-209ENSMUST00000228087 1694 ntAPPRIS ALT2 BASIC19.84■□□□□ 0.77
Ddb1Q3U1J4 Nadk2-202ENSMUST00000100789 3578 ntAPPRIS ALT2 TSL 5 BASIC19.84■□□□□ 0.77
Ddb1Q3U1J4 Btbd10-203ENSMUST00000119278 2394 ntTSL 5 BASIC19.84■□□□□ 0.77
Ddb1Q3U1J4 Susd1-202ENSMUST00000107544 3220 ntAPPRIS ALT2 TSL 5 BASIC19.83■□□□□ 0.77
Ddb1Q3U1J4 D16Ertd472e-203ENSMUST00000114220 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Ddb1Q3U1J4 A730056A06Rik-201ENSMUST00000181299 2689 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
Ddb1Q3U1J4 Ssu2-201ENSMUST00000060847 1321 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Ddb1Q3U1J4 Rab1a-201ENSMUST00000020358 2827 ntAPPRIS ALT1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Ddb1Q3U1J4 Sclt1-201ENSMUST00000026866 3005 ntAPPRIS P1 TSL 5 BASIC19.83■□□□□ 0.77
Ddb1Q3U1J4 Tpm3-203ENSMUST00000119158 1090 ntTSL 3 BASIC19.83■□□□□ 0.77
Retrieved 100 of 76,532 protein–RNA pairs in 23.7 ms