Protein–RNA interactions for Protein: Q0EEE2

Ptchd3, Patched domain-containing protein 3, mousemouse

Predictions only

Length 906 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ptchd3Q0EEE2 Zgpat-201ENSMUST00000029105 2293 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Ptchd3Q0EEE2 Tango6-202ENSMUST00000211979 2722 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Ptchd3Q0EEE2 Pspc1-202ENSMUST00000163924 2863 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Ptchd3Q0EEE2 Entpd6-201ENSMUST00000094467 2540 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Ptchd3Q0EEE2 BC037039-201ENSMUST00000192003 2205 ntBASIC15.21■□□□□ 0.03
Ptchd3Q0EEE2 Acot4-201ENSMUST00000021652 6203 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Ptchd3Q0EEE2 Miip-206ENSMUST00000172710 1769 ntAPPRIS P2 TSL 5 BASIC15.21■□□□□ 0.03
Ptchd3Q0EEE2 Gatad2a-203ENSMUST00000177851 5007 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.03
Ptchd3Q0EEE2 B230217O12Rik-201ENSMUST00000181921 1642 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Ptchd3Q0EEE2 2810408A11Rik-204ENSMUST00000108621 1455 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.03
Ptchd3Q0EEE2 Shroom3-203ENSMUST00000113055 6765 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Ptchd3Q0EEE2 Ncf1-201ENSMUST00000016094 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
Ptchd3Q0EEE2 Ttc13-210ENSMUST00000214828 3301 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
Ptchd3Q0EEE2 Gm26904-201ENSMUST00000181301 1742 ntTSL 5 BASIC15.21■□□□□ 0.03
Ptchd3Q0EEE2 Ccdc115-201ENSMUST00000042493 1705 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Ptchd3Q0EEE2 Crhbp-201ENSMUST00000045583 1701 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Ptchd3Q0EEE2 Plxnc1-201ENSMUST00000099337 7302 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Ptchd3Q0EEE2 Pcdhgc4-203ENSMUST00000195239 2272 ntTSL 3 BASIC15.21■□□□□ 0.03
Ptchd3Q0EEE2 Gm16425-201ENSMUST00000118143 3130 ntBASIC15.21■□□□□ 0.03
Ptchd3Q0EEE2 Slit1-203ENSMUST00000169141 5673 ntTSL 5 BASIC15.21■□□□□ 0.03
Ptchd3Q0EEE2 Tnnt2-202ENSMUST00000112085 1076 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.03
Ptchd3Q0EEE2 Tnnt2-203ENSMUST00000112086 1094 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.03
Ptchd3Q0EEE2 Tnnt2-204ENSMUST00000112087 1112 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.03
Ptchd3Q0EEE2 Pdxdc1-203ENSMUST00000115803 1268 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.03
Ptchd3Q0EEE2 Slc25a51-203ENSMUST00000132815 1005 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
Ptchd3Q0EEE2 Gm26039-201ENSMUST00000158152 144 ntBASIC15.21■□□□□ 0.03
Ptchd3Q0EEE2 Psmd13-209ENSMUST00000164681 726 ntTSL 5 BASIC15.21■□□□□ 0.03
Ptchd3Q0EEE2 Tnnt2-206ENSMUST00000178854 1076 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.03
Ptchd3Q0EEE2 Tnnt2-211ENSMUST00000189355 1112 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.03
Ptchd3Q0EEE2 Angptl8-201ENSMUST00000058777 865 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Ptchd3Q0EEE2 3110070M22Rik-201ENSMUST00000099148 1123 ntAPPRIS P1 BASIC15.21■□□□□ 0.03
Ptchd3Q0EEE2 Sil1-201ENSMUST00000025215 1695 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Ptchd3Q0EEE2 Helt-201ENSMUST00000058636 1541 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Ptchd3Q0EEE2 Gm14066-201ENSMUST00000134801 2057 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Ptchd3Q0EEE2 9530059O14Rik-202ENSMUST00000181682 2093 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Ptchd3Q0EEE2 Pik3ap1-201ENSMUST00000059672 2615 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Ptchd3Q0EEE2 Usp35-201ENSMUST00000139582 4262 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
Ptchd3Q0EEE2 Cyp4f13-204ENSMUST00000139353 1389 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
Ptchd3Q0EEE2 Dusp12-201ENSMUST00000027970 1374 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
Ptchd3Q0EEE2 Dlat-201ENSMUST00000034567 4035 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
Ptchd3Q0EEE2 Myod1-201ENSMUST00000072514 1861 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Ptchd3Q0EEE2 Klc1-203ENSMUST00000120544 2261 ntAPPRIS ALT1 TSL 5 BASIC15.2■□□□□ 0.02
Ptchd3Q0EEE2 Zfp362-201ENSMUST00000071108 2674 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Ptchd3Q0EEE2 Malt1-201ENSMUST00000049248 5073 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Ptchd3Q0EEE2 Gdf3-201ENSMUST00000032211 2125 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Ptchd3Q0EEE2 Nr1h3-202ENSMUST00000111354 1738 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Ptchd3Q0EEE2 Tarsl2-201ENSMUST00000032728 3192 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Ptchd3Q0EEE2 Pld4-201ENSMUST00000063888 1982 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Ptchd3Q0EEE2 Nrbf2-201ENSMUST00000077839 1813 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Ptchd3Q0EEE2 Sox17-201ENSMUST00000027035 3127 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Ptchd3Q0EEE2 Atp2c2-201ENSMUST00000095171 3222 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Ptchd3Q0EEE2 Nr3c2-204ENSMUST00000109913 5916 ntAPPRIS P2 TSL 5 BASIC15.2■□□□□ 0.02
Ptchd3Q0EEE2 Hook2-201ENSMUST00000064495 2580 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Ptchd3Q0EEE2 Plk1-201ENSMUST00000033154 2199 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Ptchd3Q0EEE2 Fam229a-201ENSMUST00000106043 558 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Ptchd3Q0EEE2 Zfp64-202ENSMUST00000109161 1009 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Ptchd3Q0EEE2 Sap18-203ENSMUST00000111269 459 ntTSL 2 BASIC15.2■□□□□ 0.02
Ptchd3Q0EEE2 1810012K08Rik-201ENSMUST00000155199 574 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Ptchd3Q0EEE2 Pgpep1-208ENSMUST00000211715 676 ntTSL 3 BASIC15.2■□□□□ 0.02
Ptchd3Q0EEE2 Dcxr-201ENSMUST00000026144 892 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Ptchd3Q0EEE2 Krtcap3-201ENSMUST00000054829 904 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Ptchd3Q0EEE2 Hist1h2ai-201ENSMUST00000070124 393 ntAPPRIS P1 BASIC15.2■□□□□ 0.02
Ptchd3Q0EEE2 Hist1h2an-201ENSMUST00000091751 393 ntAPPRIS P1 BASIC15.2■□□□□ 0.02
Ptchd3Q0EEE2 Rb1cc1-201ENSMUST00000027040 7607 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Ptchd3Q0EEE2 Kcnn1-208ENSMUST00000212611 2528 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Ptchd3Q0EEE2 Plch2-212ENSMUST00000186598 2119 ntTSL 5 BASIC15.2■□□□□ 0.02
Ptchd3Q0EEE2 Hpse-201ENSMUST00000045617 3117 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Ptchd3Q0EEE2 Npm1-201ENSMUST00000075641 1633 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Ptchd3Q0EEE2 Arhgef40-216ENSMUST00000182760 5130 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
Ptchd3Q0EEE2 Asl-205ENSMUST00000161094 1824 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Ptchd3Q0EEE2 Zfp264-201ENSMUST00000208656 1563 ntBASIC15.19■□□□□ 0.02
Ptchd3Q0EEE2 Ubxn11-202ENSMUST00000074690 1573 ntAPPRIS P2 TSL 1 (best) BASIC15.19■□□□□ 0.02
Ptchd3Q0EEE2 Slc25a32-201ENSMUST00000022908 5905 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Ptchd3Q0EEE2 Kmt5c-202ENSMUST00000108582 2774 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Ptchd3Q0EEE2 Gm45133-201ENSMUST00000207548 2773 ntBASIC15.19■□□□□ 0.02
Ptchd3Q0EEE2 Secisbp2-202ENSMUST00000110044 1915 ntTSL 2 BASIC15.19■□□□□ 0.02
Ptchd3Q0EEE2 Ecel1-203ENSMUST00000160810 2898 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Ptchd3Q0EEE2 Tbc1d1-203ENSMUST00000119756 4760 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
Ptchd3Q0EEE2 Dzip3-201ENSMUST00000114516 3331 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
Ptchd3Q0EEE2 Snapc3-201ENSMUST00000030206 1405 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Ptchd3Q0EEE2 Tmcc3-201ENSMUST00000065060 5530 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Ptchd3Q0EEE2 Ripk3-203ENSMUST00000178399 1865 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Ptchd3Q0EEE2 Cgn-203ENSMUST00000153263 2210 ntTSL 2 BASIC15.19■□□□□ 0.02
Ptchd3Q0EEE2 Ovca2-201ENSMUST00000071562 2670 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Ptchd3Q0EEE2 Dohh-202ENSMUST00000121047 946 ntTSL 2 BASIC15.19■□□□□ 0.02
Ptchd3Q0EEE2 Mir7071-201ENSMUST00000184847 69 ntBASIC15.19■□□□□ 0.02
Ptchd3Q0EEE2 Nsg1-204ENSMUST00000201363 820 ntAPPRIS P1 TSL 2 BASIC15.19■□□□□ 0.02
Ptchd3Q0EEE2 Gm9745-201ENSMUST00000021573 684 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
Ptchd3Q0EEE2 Gm18115-201ENSMUST00000221209 621 ntBASIC15.19■□□□□ 0.02
Ptchd3Q0EEE2 Nme3-201ENSMUST00000024978 715 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Ptchd3Q0EEE2 Polr2f-201ENSMUST00000040077 543 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Ptchd3Q0EEE2 Rpl39l-201ENSMUST00000044103 805 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Ptchd3Q0EEE2 Crb2-201ENSMUST00000050372 6372 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
Ptchd3Q0EEE2 Ly6h-202ENSMUST00000065417 985 ntAPPRIS ALT1 TSL 2 BASIC15.19■□□□□ 0.02
Ptchd3Q0EEE2 Fam169b-201ENSMUST00000098378 2776 ntTSL 5 BASIC15.19■□□□□ 0.02
Ptchd3Q0EEE2 Atp2c1-205ENSMUST00000163879 2408 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Ptchd3Q0EEE2 Gm43352-201ENSMUST00000196419 3065 ntBASIC15.19■□□□□ 0.02
Ptchd3Q0EEE2 Esr1-202ENSMUST00000105588 2733 ntTSL 5 BASIC15.19■□□□□ 0.02
Ptchd3Q0EEE2 Slc35e2-201ENSMUST00000043829 2910 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Ptchd3Q0EEE2 Gtf2h4-201ENSMUST00000001565 1679 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Retrieved 100 of 76,532 protein–RNA pairs in 23.9 ms