Protein–RNA interactions for Protein: P63158

Hmgb1, High mobility group protein B1, mousemouse

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb1P63158 Ddx39-201ENSMUST00000019576 1656 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Hmgb1P63158 Slc6a11-201ENSMUST00000032451 4132 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Hmgb1P63158 Ext2-201ENSMUST00000028623 2871 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Hmgb1P63158 Elavl3-203ENSMUST00000215901 3037 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Hmgb1P63158 Ifitm10-201ENSMUST00000059223 3412 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Hmgb1P63158 Acbd5-204ENSMUST00000114529 3630 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Hmgb1P63158 Eif6-202ENSMUST00000109638 1382 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Hmgb1P63158 Slc4a1ap-206ENSMUST00000201858 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
Hmgb1P63158 App-203ENSMUST00000226801 3299 ntAPPRIS ALT2 BASIC17.27■□□□□ 0.36
Hmgb1P63158 Pcdha2-201ENSMUST00000115662 5361 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.36
Hmgb1P63158 Pspc1-202ENSMUST00000163924 2863 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
Hmgb1P63158 Mdp1-201ENSMUST00000002400 1733 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Hmgb1P63158 Ppp1r37-201ENSMUST00000058444 3816 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Hmgb1P63158 Yes1-205ENSMUST00000202543 2657 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Hmgb1P63158 Ube2d3-208ENSMUST00000197134 2493 ntAPPRIS ALT1 TSL 5 BASIC17.27■□□□□ 0.36
Hmgb1P63158 Paxbp1-202ENSMUST00000118522 3973 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Hmgb1P63158 Gm2694-204ENSMUST00000181898 1303 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Hmgb1P63158 Nrip2-201ENSMUST00000001561 1893 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Hmgb1P63158 Gm42901-201ENSMUST00000197735 3171 ntBASIC17.27■□□□□ 0.36
Hmgb1P63158 Dcxr-202ENSMUST00000106148 830 ntTSL 2 BASIC17.27■□□□□ 0.36
Hmgb1P63158 Ppt1-202ENSMUST00000097902 1191 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Hmgb1P63158 Gm14026-201ENSMUST00000120625 1789 ntBASIC17.27■□□□□ 0.35
Hmgb1P63158 Slc12a5-207ENSMUST00000202223 5690 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
Hmgb1P63158 Cep19-202ENSMUST00000115168 1718 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Hmgb1P63158 Pak1ip1-201ENSMUST00000046951 1722 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Hmgb1P63158 4930512B01Rik-201ENSMUST00000021378 1856 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
Hmgb1P63158 Foxc2-201ENSMUST00000054691 2725 ntAPPRIS P1 BASIC17.27■□□□□ 0.35
Hmgb1P63158 Kpna4-203ENSMUST00000194558 3726 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Hmgb1P63158 Pitpna-203ENSMUST00000143219 3761 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Hmgb1P63158 4932702P03Rik-201ENSMUST00000138447 1482 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Hmgb1P63158 Zfp740-202ENSMUST00000119168 3932 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Hmgb1P63158 Zgpat-201ENSMUST00000029105 2293 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Hmgb1P63158 Zfp277-202ENSMUST00000069692 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Hmgb1P63158 Ugcg-201ENSMUST00000030074 4012 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Hmgb1P63158 Elmo2-202ENSMUST00000074046 3502 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Hmgb1P63158 Fgf8-205ENSMUST00000111927 843 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Hmgb1P63158 Gm15794-201ENSMUST00000120182 631 ntBASIC17.26■□□□□ 0.35
Hmgb1P63158 Eloc-203ENSMUST00000185771 742 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
Hmgb1P63158 Gm44965-201ENSMUST00000204121 360 ntAPPRIS P1 TSL 3 BASIC17.26■□□□□ 0.35
Hmgb1P63158 Calml4-206ENSMUST00000215870 803 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Hmgb1P63158 Hist1h2aj-201ENSMUST00000091710 352 ntBASIC17.26■□□□□ 0.35
Hmgb1P63158 Pdzd4-201ENSMUST00000002080 3970 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
Hmgb1P63158 Zdhhc8-201ENSMUST00000076957 4867 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Hmgb1P63158 Fbxo31-201ENSMUST00000059018 4358 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Hmgb1P63158 Gpc1-201ENSMUST00000045970 4176 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Hmgb1P63158 Suco-201ENSMUST00000048377 6327 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Hmgb1P63158 Gm16279-201ENSMUST00000149452 2945 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Hmgb1P63158 Gpsm1-202ENSMUST00000066936 3384 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
Hmgb1P63158 Myo15b-202ENSMUST00000093911 9340 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
Hmgb1P63158 Tex264-201ENSMUST00000046735 1391 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Hmgb1P63158 Cnbp-203ENSMUST00000113619 1661 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Hmgb1P63158 Nrbf2-201ENSMUST00000077839 1813 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Hmgb1P63158 Atf3-201ENSMUST00000027941 1984 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Hmgb1P63158 Pnkp-203ENSMUST00000107876 1770 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Hmgb1P63158 Miip-206ENSMUST00000172710 1769 ntAPPRIS P2 TSL 5 BASIC17.25■□□□□ 0.35
Hmgb1P63158 Ilvbl-204ENSMUST00000218271 1606 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Hmgb1P63158 Gnb2-203ENSMUST00000111023 1471 ntTSL 5 BASIC17.25■□□□□ 0.35
Hmgb1P63158 Cux1-212ENSMUST00000176778 5520 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
Hmgb1P63158 Chuk-202ENSMUST00000119591 3481 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Hmgb1P63158 Cilp2-201ENSMUST00000057831 4314 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
Hmgb1P63158 Runx2-203ENSMUST00000113572 6463 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Hmgb1P63158 Sec61g-206ENSMUST00000166950 754 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Hmgb1P63158 Gm23634-201ENSMUST00000175071 91 ntBASIC17.25■□□□□ 0.35
Hmgb1P63158 Sec61g-207ENSMUST00000178855 779 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Hmgb1P63158 Mgarp-201ENSMUST00000038154 1232 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Hmgb1P63158 Fthl17f-201ENSMUST00000097029 847 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
Hmgb1P63158 Eif4g3-205ENSMUST00000105831 6235 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
Hmgb1P63158 Adam15-202ENSMUST00000074582 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Hmgb1P63158 Pdhb-201ENSMUST00000022268 1513 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Hmgb1P63158 Ppif-201ENSMUST00000022419 1549 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Hmgb1P63158 Pofut1-203ENSMUST00000099192 1385 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Hmgb1P63158 Chpf-201ENSMUST00000079205 2892 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Hmgb1P63158 Uvrag-201ENSMUST00000037968 5157 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Hmgb1P63158 Sp8-201ENSMUST00000063918 4478 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Hmgb1P63158 Ccdc158-204ENSMUST00000151180 3352 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Hmgb1P63158 Jph4-202ENSMUST00000124493 3200 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Hmgb1P63158 Rbm26-202ENSMUST00000100327 3634 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Hmgb1P63158 Cmc2-205ENSMUST00000148235 1459 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Hmgb1P63158 Gprin1-201ENSMUST00000099506 4141 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Hmgb1P63158 Ppp1r11-201ENSMUST00000040402 1599 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Hmgb1P63158 Usp38-201ENSMUST00000042724 4707 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Hmgb1P63158 Tubg1-201ENSMUST00000043680 1802 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Hmgb1P63158 Malt1-201ENSMUST00000049248 5073 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Hmgb1P63158 Mis12-206ENSMUST00000164220 1416 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Hmgb1P63158 Rmi2-201ENSMUST00000037913 3742 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Hmgb1P63158 Pla2g16-203ENSMUST00000136756 1901 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Hmgb1P63158 Ccl27a-202ENSMUST00000108032 350 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Hmgb1P63158 Trmt112-202ENSMUST00000116551 985 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Hmgb1P63158 Gm25406-201ENSMUST00000157599 105 ntBASIC17.24■□□□□ 0.35
Hmgb1P63158 Gm44264-201ENSMUST00000203049 742 ntTSL 3 BASIC17.24■□□□□ 0.35
Hmgb1P63158 Snx12-201ENSMUST00000077876 1002 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Hmgb1P63158 Ovol2-202ENSMUST00000103171 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Hmgb1P63158 Mastl-201ENSMUST00000028119 5590 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Hmgb1P63158 Slc22a7-201ENSMUST00000087012 2007 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Hmgb1P63158 Tfdp2-201ENSMUST00000034982 7354 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
Hmgb1P63158 Hip1r-201ENSMUST00000000939 6735 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Hmgb1P63158 Gm28756-202ENSMUST00000209405 2461 ntTSL 5 BASIC17.24■□□□□ 0.35
Hmgb1P63158 Bnip2-202ENSMUST00000085393 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Hmgb1P63158 Efnb3-201ENSMUST00000004036 3183 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Hmgb1P63158 Snn-201ENSMUST00000089011 2902 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Retrieved 100 of 76,532 protein–RNA pairs in 55.8 ms