Protein–RNA interactions for Protein: P62960

Ybx1, Nuclease-sensitive element-binding protein 1, mousemouse

Known RBP Predictions only

Length 322 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ybx1P62960 Tnfaip2-202ENSMUST00000109792 3284 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
Ybx1P62960 H2-Q10-202ENSMUST00000174525 1991 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
Ybx1P62960 Tlk2-204ENSMUST00000106941 3699 ntAPPRIS ALT1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Ybx1P62960 Pkp2-202ENSMUST00000161342 2931 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Ybx1P62960 Dhdds-203ENSMUST00000105886 1015 ntTSL 5 BASIC16.07■□□□□ 0.16
Ybx1P62960 Meig1-203ENSMUST00000115082 603 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Ybx1P62960 Sumo3-204ENSMUST00000129492 487 ntAPPRIS ALT2 TSL 2 BASIC16.07■□□□□ 0.16
Ybx1P62960 Ndufa1-201ENSMUST00000016571 419 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Ybx1P62960 1600014C10Rik-207ENSMUST00000179503 784 ntTSL 5 BASIC16.07■□□□□ 0.16
Ybx1P62960 Gm9682-201ENSMUST00000197505 556 ntBASIC16.07■□□□□ 0.16
Ybx1P62960 1700016B15Rik-201ENSMUST00000209027 733 ntBASIC16.07■□□□□ 0.16
Ybx1P62960 Elof1-203ENSMUST00000213233 810 ntAPPRIS P1 TSL 3 BASIC16.07■□□□□ 0.16
Ybx1P62960 Rpl8-201ENSMUST00000004072 862 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Ybx1P62960 Rpl28-202ENSMUST00000078432 772 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
Ybx1P62960 Cdkn2d-201ENSMUST00000086374 1264 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Ybx1P62960 A130006I12Rik-201ENSMUST00000091396 408 ntBASIC16.07■□□□□ 0.16
Ybx1P62960 Psmd14-201ENSMUST00000028278 1541 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Ybx1P62960 Prr15-201ENSMUST00000059138 1511 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Ybx1P62960 Lrrc14-202ENSMUST00000127208 4849 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Ybx1P62960 Ddx39-201ENSMUST00000019576 1656 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Ybx1P62960 Idh2-201ENSMUST00000107384 1745 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Ybx1P62960 Hmgb3-204ENSMUST00000114582 1743 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Ybx1P62960 Hmgb3-203ENSMUST00000088874 1728 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
Ybx1P62960 Spdef-201ENSMUST00000025054 1824 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Ybx1P62960 Ankrd23-201ENSMUST00000054665 1964 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Ybx1P62960 A230103J11Rik-202ENSMUST00000156084 2086 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Ybx1P62960 Mff-212ENSMUST00000162003 2087 ntTSL 5 BASIC16.07■□□□□ 0.16
Ybx1P62960 Rbm47-203ENSMUST00000113724 2186 ntAPPRIS P3 TSL 5 BASIC16.07■□□□□ 0.16
Ybx1P62960 Tpm2-201ENSMUST00000030184 2175 ntTSL 5 BASIC16.07■□□□□ 0.16
Ybx1P62960 Trmt2a-203ENSMUST00000115640 2367 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
Ybx1P62960 Plaa-201ENSMUST00000107107 2784 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Ybx1P62960 Myef2-201ENSMUST00000067780 2999 ntAPPRIS ALT2 TSL 5 BASIC16.07■□□□□ 0.16
Ybx1P62960 Sept11-205ENSMUST00000201700 3478 ntAPPRIS ALT1 TSL 2 BASIC16.07■□□□□ 0.16
Ybx1P62960 Rusc2-202ENSMUST00000098106 5325 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Ybx1P62960 Nploc4-202ENSMUST00000103017 4025 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Ybx1P62960 Gpr160-207ENSMUST00000166278 1689 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Ybx1P62960 Dio1-202ENSMUST00000106748 396 ntTSL 5 BASIC16.06■□□□□ 0.16
Ybx1P62960 Polr2i-202ENSMUST00000108192 508 ntTSL 2 BASIC16.06■□□□□ 0.16
Ybx1P62960 Slc38a6-204ENSMUST00000126488 589 ntTSL 5 BASIC16.06■□□□□ 0.16
Ybx1P62960 Gm17271-201ENSMUST00000165535 355 ntBASIC16.06■□□□□ 0.16
Ybx1P62960 Rhox2a-202ENSMUST00000173650 735 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Ybx1P62960 Znrf1-213ENSMUST00000174333 515 ntTSL 3 BASIC16.06■□□□□ 0.16
Ybx1P62960 Rhox2c-204ENSMUST00000184688 720 ntTSL 5 BASIC16.06■□□□□ 0.16
Ybx1P62960 1700025N23Rik-201ENSMUST00000186189 915 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Ybx1P62960 Hist1h3c-201ENSMUST00000091752 630 ntAPPRIS P1 BASIC16.06■□□□□ 0.16
Ybx1P62960 Rabl6-201ENSMUST00000058137 3230 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Ybx1P62960 Cd164-201ENSMUST00000019962 2922 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Ybx1P62960 Map3k5-201ENSMUST00000095806 5450 ntAPPRIS P2 TSL 1 (best) BASIC16.06■□□□□ 0.16
Ybx1P62960 Gusb-203ENSMUST00000111308 2038 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Ybx1P62960 Zyx-205ENSMUST00000203401 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
Ybx1P62960 Agfg1-208ENSMUST00000190052 2991 ntTSL 5 BASIC16.05■□□□□ 0.16
Ybx1P62960 Kcnq2-204ENSMUST00000103047 2899 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Ybx1P62960 Gm26904-201ENSMUST00000181301 1742 ntTSL 5 BASIC16.05■□□□□ 0.16
Ybx1P62960 Dnajc9-201ENSMUST00000022345 1631 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Ybx1P62960 Ubap1-202ENSMUST00000108060 2514 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Ybx1P62960 Rgma-204ENSMUST00000139780 3371 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
Ybx1P62960 Aanat-205ENSMUST00000153476 1353 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Ybx1P62960 Mef2b-203ENSMUST00000110143 1312 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
Ybx1P62960 1500011B03Rik-202ENSMUST00000112160 1333 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
Ybx1P62960 Rhbdl1-202ENSMUST00000183929 1349 ntTSL 5 BASIC16.05■□□□□ 0.16
Ybx1P62960 Avpi1-201ENSMUST00000018965 1044 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Ybx1P62960 Orc6-201ENSMUST00000034132 1287 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Ybx1P62960 Pmepa1-201ENSMUST00000036248 4538 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Ybx1P62960 Tapt1-201ENSMUST00000055128 3513 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
Ybx1P62960 Zfp42-202ENSMUST00000209356 1744 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Ybx1P62960 Pola2-202ENSMUST00000165143 2397 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Ybx1P62960 Tmem260-209ENSMUST00000226422 6333 ntAPPRIS ALT2 BASIC16.05■□□□□ 0.16
Ybx1P62960 Atp8b2-201ENSMUST00000069805 5559 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
Ybx1P62960 Mapk14-204ENSMUST00000114754 3592 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Ybx1P62960 Inhba-202ENSMUST00000164993 1529 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Ybx1P62960 R3hdm4-202ENSMUST00000171416 1543 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Ybx1P62960 Map4k4-202ENSMUST00000168431 5632 ntAPPRIS ALT2 TSL 5 BASIC16.04■□□□□ 0.16
Ybx1P62960 Lancl1-203ENSMUST00000119559 1385 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Ybx1P62960 9130401M01Rik-201ENSMUST00000100655 1341 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Ybx1P62960 Tfeb-204ENSMUST00000113288 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
Ybx1P62960 Tmem253-201ENSMUST00000100638 1234 ntAPPRIS P2 TSL 1 (best) BASIC16.04■□□□□ 0.16
Ybx1P62960 Gm14701-201ENSMUST00000117156 348 ntBASIC16.04■□□□□ 0.16
Ybx1P62960 2010010A06Rik-203ENSMUST00000190465 650 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Ybx1P62960 Gm44596-201ENSMUST00000204223 647 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
Ybx1P62960 AC122024.2-201ENSMUST00000220086 871 ntBASIC16.04■□□□□ 0.16
Ybx1P62960 Tspyl-ps-201ENSMUST00000220692 1117 ntBASIC16.04■□□□□ 0.16
Ybx1P62960 Ftl1-ps1-202ENSMUST00000222435 938 ntAPPRIS P1 BASIC16.04■□□□□ 0.16
Ybx1P62960 AC124549.3-201ENSMUST00000225541 367 ntBASIC16.04■□□□□ 0.16
Ybx1P62960 Krtap9-3-201ENSMUST00000062683 759 ntAPPRIS P1 BASIC16.04■□□□□ 0.16
Ybx1P62960 Bpifb3-202ENSMUST00000109760 1741 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
Ybx1P62960 Gm38318-201ENSMUST00000195769 1706 ntBASIC16.04■□□□□ 0.16
Ybx1P62960 Slc6a1-204ENSMUST00000204074 1740 ntTSL 5 BASIC16.04■□□□□ 0.16
Ybx1P62960 Tmem183a-201ENSMUST00000049470 3149 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Ybx1P62960 Cobll1-205ENSMUST00000112431 5024 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
Ybx1P62960 Gm26891-201ENSMUST00000181644 2599 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Ybx1P62960 Arntl-203ENSMUST00000210074 2554 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Ybx1P62960 Pias4-201ENSMUST00000005064 2571 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Ybx1P62960 Mmp14-201ENSMUST00000089688 2596 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Ybx1P62960 Casd1-201ENSMUST00000015333 3961 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Ybx1P62960 Pi4k2b-202ENSMUST00000031082 3034 ntAPPRIS ALT2 TSL 2 BASIC16.04■□□□□ 0.16
Ybx1P62960 Hmga1b-201ENSMUST00000105046 1626 ntAPPRIS P1 BASIC16.04■□□□□ 0.16
Ybx1P62960 Zbtb16-202ENSMUST00000216150 2505 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Ybx1P62960 Gm3739-201ENSMUST00000165744 2011 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
Ybx1P62960 Fam160a2-203ENSMUST00000118726 2855 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
Ybx1P62960 Rnase10-202ENSMUST00000164632 1521 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
Retrieved 100 of 76,532 protein–RNA pairs in 44.6 ms