Protein–RNA interactions for Protein: P50431

Shmt1, Serine hydroxymethyltransferase, cytosolic, mousemouse

Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shmt1P50431 Gramd4-204ENSMUST00000138134 4292 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
Shmt1P50431 Rbfox2-204ENSMUST00000171751 3558 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
Shmt1P50431 Zfp13-202ENSMUST00000115516 2104 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
Shmt1P50431 Chchd7-203ENSMUST00000119307 889 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
Shmt1P50431 Slc25a5-201ENSMUST00000016463 1240 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Shmt1P50431 Mir5126-201ENSMUST00000175513 77 ntBASIC16.59■□□□□ 0.25
Shmt1P50431 D530033B14Rik-201ENSMUST00000205412 546 ntTSL 5 BASIC16.59■□□□□ 0.25
Shmt1P50431 Gm38948-201ENSMUST00000210035 688 ntTSL 3 BASIC16.59■□□□□ 0.25
Shmt1P50431 Gm38575-201ENSMUST00000213881 652 ntTSL 2 BASIC16.59■□□□□ 0.25
Shmt1P50431 AC127302.2-201ENSMUST00000215212 268 ntBASIC16.59■□□□□ 0.25
Shmt1P50431 Bhlha9-201ENSMUST00000056184 1207 ntAPPRIS P1 BASIC16.59■□□□□ 0.25
Shmt1P50431 Gm5867-201ENSMUST00000063197 592 ntBASIC16.59■□□□□ 0.25
Shmt1P50431 Chn1-203ENSMUST00000112024 4050 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Shmt1P50431 Chn1-210ENSMUST00000180045 4050 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
Shmt1P50431 Cnbd2-201ENSMUST00000037096 2277 ntAPPRIS P2 TSL 1 (best) BASIC16.59■□□□□ 0.25
Shmt1P50431 Psmd14-201ENSMUST00000028278 1541 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Shmt1P50431 Ttc39b-202ENSMUST00000048274 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
Shmt1P50431 Arf2-202ENSMUST00000063347 2660 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
Shmt1P50431 Cd164l2-201ENSMUST00000105910 986 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Shmt1P50431 Ftl2-ps-201ENSMUST00000118517 552 ntBASIC16.58■□□□□ 0.24
Shmt1P50431 Cox6c-205ENSMUST00000156915 606 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.24
Shmt1P50431 Nat8b-ps-201ENSMUST00000162660 699 ntBASIC16.58■□□□□ 0.24
Shmt1P50431 Urah-204ENSMUST00000185612 716 ntAPPRIS P3 TSL 3 BASIC16.58■□□□□ 0.24
Shmt1P50431 Urah-207ENSMUST00000211372 688 ntAPPRIS P3 TSL 2 BASIC16.58■□□□□ 0.24
Shmt1P50431 Urah-201ENSMUST00000026554 890 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.24
Shmt1P50431 Gm15590-201ENSMUST00000078419 552 ntBASIC16.58■□□□□ 0.24
Shmt1P50431 Psma5-201ENSMUST00000090569 1239 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Shmt1P50431 Lypd1-205ENSMUST00000162899 1511 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
Shmt1P50431 Dnajc9-201ENSMUST00000022345 1631 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Shmt1P50431 Clip2-202ENSMUST00000100647 4994 ntAPPRIS P4 TSL 1 (best) BASIC16.58■□□□□ 0.24
Shmt1P50431 Asf1b-201ENSMUST00000005607 1788 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Shmt1P50431 Sigirr-206ENSMUST00000210167 1897 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
Shmt1P50431 Inhbc-201ENSMUST00000026472 1859 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Shmt1P50431 Gm6588-201ENSMUST00000100882 2313 ntAPPRIS P1 BASIC16.58■□□□□ 0.24
Shmt1P50431 Fads3-201ENSMUST00000115995 3269 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Shmt1P50431 Rffl-206ENSMUST00000108173 3489 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Shmt1P50431 Phf21b-203ENSMUST00000159939 3639 ntAPPRIS P2 TSL 1 (best) BASIC16.58■□□□□ 0.24
Shmt1P50431 Sh3rf3-205ENSMUST00000153031 5682 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Shmt1P50431 Tmem65-201ENSMUST00000072113 3747 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Shmt1P50431 Fgfr2-215ENSMUST00000122054 3323 ntAPPRIS P4 TSL 1 (best) BASIC16.57■□□□□ 0.24
Shmt1P50431 Plscr3-202ENSMUST00000108632 1835 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Shmt1P50431 Fgf15-201ENSMUST00000033389 1810 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Shmt1P50431 Tmem81-202ENSMUST00000188789 1751 ntAPPRIS P1 BASIC16.57■□□□□ 0.24
Shmt1P50431 Cnbp-203ENSMUST00000113619 1661 ntAPPRIS P2 TSL 1 (best) BASIC16.57■□□□□ 0.24
Shmt1P50431 Fgf9-201ENSMUST00000022545 1593 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Shmt1P50431 Sbf2-213ENSMUST00000171218 1476 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
Shmt1P50431 Gm32369-201ENSMUST00000222630 1467 ntTSL 5 BASIC16.57■□□□□ 0.24
Shmt1P50431 Gm15358-201ENSMUST00000119249 520 ntBASIC16.57■□□□□ 0.24
Shmt1P50431 Gm1401-201ENSMUST00000122048 772 ntBASIC16.57■□□□□ 0.24
Shmt1P50431 Mfap2-203ENSMUST00000166376 890 ntAPPRIS P1 TSL 2 BASIC16.57■□□□□ 0.24
Shmt1P50431 Tma7-201ENSMUST00000167504 944 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Shmt1P50431 Csrp3-202ENSMUST00000167786 899 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Shmt1P50431 2810030D12Rik-203ENSMUST00000190461 1039 ntBASIC16.57■□□□□ 0.24
Shmt1P50431 Mrpl34-201ENSMUST00000048914 607 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Shmt1P50431 Gm5145-201ENSMUST00000095633 837 ntAPPRIS P1 BASIC16.57■□□□□ 0.24
Shmt1P50431 Gldc-201ENSMUST00000025778 3754 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Shmt1P50431 Emx2-201ENSMUST00000062216 2916 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Shmt1P50431 Entpd6-201ENSMUST00000094467 2540 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Shmt1P50431 Stam-202ENSMUST00000102960 5000 ntAPPRIS P2 TSL 1 (best) BASIC16.57■□□□□ 0.24
Shmt1P50431 Esrrb-201ENSMUST00000021680 2136 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
Shmt1P50431 Dctd-203ENSMUST00000170263 2096 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Shmt1P50431 Fmnl3-203ENSMUST00000120633 4290 ntAPPRIS ALT2 TSL 5 BASIC16.56■□□□□ 0.24
Shmt1P50431 Bnipl-202ENSMUST00000107195 1810 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Shmt1P50431 Shank3-203ENSMUST00000109309 7365 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
Shmt1P50431 Mccc1-201ENSMUST00000029259 2455 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Shmt1P50431 Plbd2-201ENSMUST00000031597 4208 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Shmt1P50431 Tnfaip2-202ENSMUST00000109792 3284 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
Shmt1P50431 Anp32e-201ENSMUST00000015893 1381 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
Shmt1P50431 AC093043.3-201ENSMUST00000226531 2273 ntBASIC16.56■□□□□ 0.24
Shmt1P50431 Btbd11-203ENSMUST00000105307 5788 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
Shmt1P50431 Dars-201ENSMUST00000027602 2175 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Shmt1P50431 Hist1h4k-201ENSMUST00000102983 312 ntAPPRIS P1 BASIC16.56■□□□□ 0.24
Shmt1P50431 Sec22b-202ENSMUST00000122288 1177 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
Shmt1P50431 Rps27l-203ENSMUST00000127896 575 ntTSL 5 BASIC16.56■□□□□ 0.24
Shmt1P50431 1700039E22Rik-201ENSMUST00000174082 770 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
Shmt1P50431 Gm19164-201ENSMUST00000210667 640 ntBASIC16.56■□□□□ 0.24
Shmt1P50431 AC140264.2-201ENSMUST00000219668 289 ntTSL 2 BASIC16.56■□□□□ 0.24
Shmt1P50431 AV026068-213ENSMUST00000223675 1171 ntBASIC16.56■□□□□ 0.24
Shmt1P50431 Il3ra-205ENSMUST00000224877 1128 ntAPPRIS ALT2 BASIC16.56■□□□□ 0.24
Shmt1P50431 Psmb4-201ENSMUST00000005923 1183 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Shmt1P50431 Espnl-201ENSMUST00000088904 5445 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Shmt1P50431 Dbx1-201ENSMUST00000032717 2091 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Shmt1P50431 Zbtb2-201ENSMUST00000100077 3086 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Shmt1P50431 Rmi2-201ENSMUST00000037913 3742 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Shmt1P50431 AC154527.4-201ENSMUST00000224364 1667 ntBASIC16.56■□□□□ 0.24
Shmt1P50431 Abl1-202ENSMUST00000075759 6327 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
Shmt1P50431 Pspc1-202ENSMUST00000163924 2863 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
Shmt1P50431 Irak1-201ENSMUST00000033769 2890 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
Shmt1P50431 Iqcd-201ENSMUST00000069259 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
Shmt1P50431 Rnf103-202ENSMUST00000114178 3431 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
Shmt1P50431 Cnih1-201ENSMUST00000015903 1538 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Shmt1P50431 Nmur1-203ENSMUST00000212541 1534 ntTSL 5 BASIC16.55■□□□□ 0.24
Shmt1P50431 AC069562.2-201ENSMUST00000224644 2146 ntBASIC16.55■□□□□ 0.24
Shmt1P50431 Sf3b4-201ENSMUST00000076372 1915 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Shmt1P50431 9130024F11Rik-201ENSMUST00000135238 1300 ntTSL 2 BASIC16.55■□□□□ 0.24
Shmt1P50431 Mief1-203ENSMUST00000228788 5352 ntAPPRIS P1 BASIC16.55■□□□□ 0.24
Shmt1P50431 Arl4a-201ENSMUST00000101472 1200 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Shmt1P50431 Gm21586-201ENSMUST00000107988 264 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Shmt1P50431 Gm21953-201ENSMUST00000108002 264 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
Shmt1P50431 Gm7222-201ENSMUST00000117512 906 ntBASIC16.55■□□□□ 0.24
Retrieved 100 of 76,532 protein–RNA pairs in 54.2 ms