Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 Slc25a32-201ENSMUST00000022908 5905 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Rfx1P48377 Sik1-201ENSMUST00000024839 4511 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Rfx1P48377 Sp8-201ENSMUST00000063918 4478 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Rfx1P48377 Magi1-201ENSMUST00000055224 7007 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Rfx1P48377 Uba52-203ENSMUST00000125184 711 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Rfx1P48377 Cdc34-202ENSMUST00000166603 1078 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Rfx1P48377 C430014B12Rik-202ENSMUST00000186858 657 ntTSL 2 BASIC18.81■□□□□ 0.6
Rfx1P48377 Nme3-201ENSMUST00000024978 715 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Rfx1P48377 Abhd15-201ENSMUST00000094004 2662 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Rfx1P48377 Ppp2r2c-201ENSMUST00000031003 4088 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Rfx1P48377 Ubp1-206ENSMUST00000216558 1623 ntAPPRIS P4 TSL 1 (best) BASIC18.81■□□□□ 0.6
Rfx1P48377 Krt2-201ENSMUST00000023712 2613 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Rfx1P48377 Spon1-202ENSMUST00000084696 5201 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Rfx1P48377 Pak2-201ENSMUST00000023467 5741 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Rfx1P48377 Tex264-201ENSMUST00000046735 1391 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Rfx1P48377 Max-202ENSMUST00000110395 1942 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
Rfx1P48377 Mycbp-202ENSMUST00000106202 1536 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Rfx1P48377 Adam9-202ENSMUST00000084035 3985 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Rfx1P48377 Phldb1-211ENSMUST00000135436 2844 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Rfx1P48377 Dnm1l-203ENSMUST00000115749 4068 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Rfx1P48377 Dnm1l-202ENSMUST00000096229 4056 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Rfx1P48377 Dhodh-209ENSMUST00000143900 1455 ntTSL 5 BASIC18.8■□□□□ 0.6
Rfx1P48377 Gm26781-201ENSMUST00000181385 1477 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Rfx1P48377 Bin2-207ENSMUST00000183211 2036 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
Rfx1P48377 Ppdpf-201ENSMUST00000016488 1160 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Rfx1P48377 Rpl14-201ENSMUST00000165532 1009 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Rfx1P48377 Khdc3-204ENSMUST00000173734 1228 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Rfx1P48377 Ndufs7-201ENSMUST00000020361 758 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Rfx1P48377 Cmtm7-201ENSMUST00000035009 993 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Rfx1P48377 Gm43352-201ENSMUST00000196419 3065 ntBASIC18.8■□□□□ 0.6
Rfx1P48377 Fstl1-201ENSMUST00000114763 3789 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Rfx1P48377 Grin1os-201ENSMUST00000129723 2891 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Rfx1P48377 Gm37812-201ENSMUST00000195216 2475 ntBASIC18.8■□□□□ 0.6
Rfx1P48377 Elavl3-201ENSMUST00000003501 5014 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Rfx1P48377 Mdp1-201ENSMUST00000002400 1733 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Rfx1P48377 Furin-203ENSMUST00000122232 4286 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Rfx1P48377 Casp8-204ENSMUST00000191201 1849 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
Rfx1P48377 Apoa4-201ENSMUST00000034585 1815 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Rfx1P48377 Ss18-203ENSMUST00000092041 2997 ntAPPRIS ALT1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Rfx1P48377 Tle3-205ENSMUST00000159630 4065 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Rfx1P48377 Ptn-201ENSMUST00000101534 1614 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Rfx1P48377 Klc1-203ENSMUST00000120544 2261 ntAPPRIS ALT1 TSL 5 BASIC18.79■□□□□ 0.6
Rfx1P48377 Washc1-201ENSMUST00000072383 2904 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Rfx1P48377 Slit1-203ENSMUST00000169141 5673 ntTSL 5 BASIC18.79■□□□□ 0.6
Rfx1P48377 Garem2-201ENSMUST00000058045 3865 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
Rfx1P48377 Ogfrl1-201ENSMUST00000027343 4844 ntAPPRIS P1 TSL 3 BASIC18.79■□□□□ 0.6
Rfx1P48377 Pld2-202ENSMUST00000108556 3391 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Rfx1P48377 Prr3-209ENSMUST00000174849 581 ntTSL 2 BASIC18.79■□□□□ 0.6
Rfx1P48377 Gm9484-201ENSMUST00000195892 1159 ntBASIC18.79■□□□□ 0.6
Rfx1P48377 Pcyox1-206ENSMUST00000204116 546 ntTSL 5 BASIC18.79■□□□□ 0.6
Rfx1P48377 Tmem35b-201ENSMUST00000094712 1120 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Rfx1P48377 Fbxo36-201ENSMUST00000097672 901 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Rfx1P48377 Emd-201ENSMUST00000002029 1595 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Rfx1P48377 Sorbs1-208ENSMUST00000224247 2688 ntAPPRIS ALT2 BASIC18.79■□□□□ 0.6
Rfx1P48377 Gatad2a-203ENSMUST00000177851 5007 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
Rfx1P48377 Ecm1-201ENSMUST00000029753 1894 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Rfx1P48377 Gnb1-201ENSMUST00000030940 3131 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Rfx1P48377 Htr7-205ENSMUST00000166074 3079 ntTSL 5 BASIC18.79■□□□□ 0.6
Rfx1P48377 Pdlim1-201ENSMUST00000068439 2571 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Rfx1P48377 Plcb1-205ENSMUST00000131552 7202 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Rfx1P48377 Tmed3-201ENSMUST00000058488 1346 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Rfx1P48377 Runx2-203ENSMUST00000113572 6463 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
Rfx1P48377 Med25-210ENSMUST00000208253 3693 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Rfx1P48377 Hmgb3-204ENSMUST00000114582 1743 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Rfx1P48377 Hmgb3-203ENSMUST00000088874 1728 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
Rfx1P48377 Rcor1-202ENSMUST00000116388 2720 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
Rfx1P48377 Gm26793-201ENSMUST00000180930 2732 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Rfx1P48377 Hip1r-201ENSMUST00000000939 6735 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Rfx1P48377 Gm12359-202ENSMUST00000141696 713 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Rfx1P48377 Gm12359-203ENSMUST00000153181 680 ntTSL 3 BASIC18.78■□□□□ 0.6
Rfx1P48377 Fkbp3-201ENSMUST00000021332 1022 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Rfx1P48377 Cadm1-201ENSMUST00000034581 1254 ntAPPRIS ALT1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Rfx1P48377 Zyx-205ENSMUST00000203401 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
Rfx1P48377 Mis12-201ENSMUST00000048807 3003 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Rfx1P48377 Adarb1-202ENSMUST00000098374 6584 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Rfx1P48377 Exoc6-201ENSMUST00000066439 2729 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Rfx1P48377 Brsk2-202ENSMUST00000075528 2160 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Rfx1P48377 Poli-201ENSMUST00000043286 2591 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Rfx1P48377 Arhgef40-216ENSMUST00000182760 5130 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
Rfx1P48377 Rhpn1-202ENSMUST00000121137 2283 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
Rfx1P48377 Bpifb3-202ENSMUST00000109760 1741 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
Rfx1P48377 Mpst-203ENSMUST00000169133 1309 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
Rfx1P48377 Ncf1-201ENSMUST00000016094 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
Rfx1P48377 Slc39a11-201ENSMUST00000042657 2781 ntAPPRIS ALT2 TSL 2 BASIC18.77■□□□□ 0.6
Rfx1P48377 4930474N05Rik-203ENSMUST00000226305 2313 ntAPPRIS P1 BASIC18.77■□□□□ 0.6
Rfx1P48377 Arrdc1-201ENSMUST00000028349 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
Rfx1P48377 Gm10814-201ENSMUST00000180505 1933 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Rfx1P48377 Plk1-201ENSMUST00000033154 2199 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Rfx1P48377 Gm20472-201ENSMUST00000174403 1240 ntBASIC18.77■□□□□ 0.6
Rfx1P48377 Gm22240-201ENSMUST00000175225 82 ntBASIC18.77■□□□□ 0.6
Rfx1P48377 AL672049.1-201ENSMUST00000197943 91 ntBASIC18.77■□□□□ 0.6
Rfx1P48377 Bahd1-201ENSMUST00000036578 4594 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Rfx1P48377 Eif2b1-201ENSMUST00000031334 2013 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Rfx1P48377 Cep55-203ENSMUST00000169673 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
Rfx1P48377 Ccdc137-201ENSMUST00000058370 2778 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Rfx1P48377 Kcng4-202ENSMUST00000164382 1875 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
Rfx1P48377 Gm9768-201ENSMUST00000206007 2861 ntBASIC18.77■□□□□ 0.6
Rfx1P48377 Cpxm1-201ENSMUST00000028897 2366 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Rfx1P48377 Gdf3-201ENSMUST00000032211 2125 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Rfx1P48377 Grwd1-202ENSMUST00000131384 1974 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
Retrieved 100 of 76,532 protein–RNA pairs in 41.3 ms