Protein–RNA interactions for Protein: P39061

Col18a1, Collagen alpha-1(XVIII) chain, mousemouse

Predictions only

Length 1,774 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col18a1P39061 Gm19684-201ENSMUST00000173128 1611 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Col18a1P39061 Chac1-201ENSMUST00000028780 1637 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Col18a1P39061 Snai1-201ENSMUST00000052631 1621 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Col18a1P39061 Suz12-206ENSMUST00000163272 4303 ntAPPRIS ALT2 TSL 5 BASIC20.72■□□□□ 0.91
Col18a1P39061 Gm42722-201ENSMUST00000198855 940 ntTSL 3 BASIC20.72■□□□□ 0.91
Col18a1P39061 Gm45195-201ENSMUST00000205597 1008 ntBASIC20.72■□□□□ 0.91
Col18a1P39061 Shd-206ENSMUST00000225145 998 ntBASIC20.72■□□□□ 0.91
Col18a1P39061 Smim8-201ENSMUST00000029972 786 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Col18a1P39061 Grk2-202ENSMUST00000088737 3376 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Col18a1P39061 Pigt-201ENSMUST00000103101 2562 ntAPPRIS P2 TSL 1 (best) BASIC20.71■□□□□ 0.91
Col18a1P39061 Pfkfb4-201ENSMUST00000051873 3316 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
Col18a1P39061 Sirt1-203ENSMUST00000120239 4430 ntAPPRIS P3 TSL 5 BASIC20.71■□□□□ 0.91
Col18a1P39061 Acin1-224ENSMUST00000167015 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
Col18a1P39061 Atp2c1-205ENSMUST00000163879 2408 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
Col18a1P39061 Prr14-201ENSMUST00000033095 2402 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Col18a1P39061 Gm38319-201ENSMUST00000194537 1266 ntBASIC20.71■□□□□ 0.91
Col18a1P39061 Cenpm-201ENSMUST00000089155 1109 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
Col18a1P39061 Zufsp-202ENSMUST00000218055 2180 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Col18a1P39061 Mycn-202ENSMUST00000130990 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Col18a1P39061 Afg1l-201ENSMUST00000041024 2513 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Col18a1P39061 Hnrnpa2b1-210ENSMUST00000204188 1518 ntTSL 5 BASIC20.71■□□□□ 0.91
Col18a1P39061 Gm8839-201ENSMUST00000121279 1645 ntBASIC20.71■□□□□ 0.91
Col18a1P39061 Gm27029-201ENSMUST00000107257 1898 ntAPPRIS ALT2 TSL 5 BASIC20.71■□□□□ 0.91
Col18a1P39061 Gabrd-201ENSMUST00000030925 1921 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Col18a1P39061 Rsph3a-201ENSMUST00000097423 2189 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Col18a1P39061 D16Ertd472e-203ENSMUST00000114220 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Col18a1P39061 Eomes-202ENSMUST00000111763 2869 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
Col18a1P39061 Mrpl40-202ENSMUST00000119273 778 ntTSL 3 BASIC20.7■□□□□ 0.9
Col18a1P39061 Gm10535-201ENSMUST00000182275 915 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
Col18a1P39061 Klk8-201ENSMUST00000085461 1322 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Col18a1P39061 Gnas-222ENSMUST00000180362 1645 ntTSL 5 BASIC20.7■□□□□ 0.9
Col18a1P39061 Idh3b-201ENSMUST00000028892 1616 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Col18a1P39061 Tmem267-205ENSMUST00000223912 1789 ntAPPRIS P1 BASIC20.7■□□□□ 0.9
Col18a1P39061 Gm16401-202ENSMUST00000197463 2074 ntBASIC20.7■□□□□ 0.9
Col18a1P39061 Coil-201ENSMUST00000036649 2607 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Col18a1P39061 Tmem214-201ENSMUST00000114716 2220 ntAPPRIS ALT2 TSL 5 BASIC20.7■□□□□ 0.9
Col18a1P39061 Cyp4f16-201ENSMUST00000003416 2227 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Col18a1P39061 Osbpl10-201ENSMUST00000046627 1872 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
Col18a1P39061 Gprc5c-208ENSMUST00000177952 1809 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
Col18a1P39061 Cradd-201ENSMUST00000053594 1661 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Col18a1P39061 Mterf4-202ENSMUST00000112942 1525 ntTSL 2 BASIC20.7■□□□□ 0.9
Col18a1P39061 Gm5320-201ENSMUST00000207163 1519 ntBASIC20.7■□□□□ 0.9
Col18a1P39061 Ppp1r14d-202ENSMUST00000110820 790 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Col18a1P39061 Gm5566-201ENSMUST00000116118 459 ntBASIC20.69■□□□□ 0.9
Col18a1P39061 Sec11a-202ENSMUST00000117383 1094 ntTSL 2 BASIC20.69■□□□□ 0.9
Col18a1P39061 Sec11a-203ENSMUST00000119980 903 ntTSL 2 BASIC20.69■□□□□ 0.9
Col18a1P39061 Chchd7-207ENSMUST00000121210 548 ntTSL 2 BASIC20.69■□□□□ 0.9
Col18a1P39061 Gm12091-201ENSMUST00000146791 830 ntBASIC20.69■□□□□ 0.9
Col18a1P39061 Pdlim7-202ENSMUST00000069929 899 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Col18a1P39061 Abhd10-201ENSMUST00000066983 2848 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Col18a1P39061 Zbtb45-201ENSMUST00000051390 2171 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Col18a1P39061 Slco3a1-202ENSMUST00000098371 2709 ntAPPRIS ALT1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Col18a1P39061 Cr1l-208ENSMUST00000194111 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
Col18a1P39061 Actl7b-201ENSMUST00000095080 1439 ntAPPRIS P1 BASIC20.69■□□□□ 0.9
Col18a1P39061 Crym-201ENSMUST00000033198 1383 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Col18a1P39061 Gm15420-201ENSMUST00000133274 382 ntTSL 3 BASIC20.69■□□□□ 0.9
Col18a1P39061 Baiap2l2-205ENSMUST00000170955 1058 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Col18a1P39061 Tlcd2-201ENSMUST00000043598 1153 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
Col18a1P39061 Tcf7l2-203ENSMUST00000111646 2839 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
Col18a1P39061 Sergef-201ENSMUST00000033127 1465 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Col18a1P39061 Gm26858-201ENSMUST00000180608 2040 ntTSL 5 BASIC20.68■□□□□ 0.9
Col18a1P39061 Shd-202ENSMUST00000223629 1430 ntAPPRIS P2 BASIC20.68■□□□□ 0.9
Col18a1P39061 Tfeb-203ENSMUST00000113284 1974 ntTSL 5 BASIC20.68■□□□□ 0.9
Col18a1P39061 Sf3b4-201ENSMUST00000076372 1915 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Col18a1P39061 Defb30-203ENSMUST00000111208 503 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
Col18a1P39061 Defb30-204ENSMUST00000111209 721 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
Col18a1P39061 Gm13066-201ENSMUST00000145263 884 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
Col18a1P39061 Ucn-202ENSMUST00000201184 499 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Col18a1P39061 Kat14-201ENSMUST00000028911 3801 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Col18a1P39061 Crybb2-201ENSMUST00000031295 724 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Col18a1P39061 Smurf2-202ENSMUST00000103067 5290 ntTSL 5 BASIC20.68■□□□□ 0.9
Col18a1P39061 1810014B01Rik-201ENSMUST00000181587 1661 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
Col18a1P39061 Fbxl5-207ENSMUST00000124610 2306 ntTSL 5 BASIC20.68■□□□□ 0.9
Col18a1P39061 Clvs2-203ENSMUST00000160299 2610 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
Col18a1P39061 Doc2a-201ENSMUST00000064110 2538 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Col18a1P39061 BC024978-204ENSMUST00000179391 1748 ntAPPRIS P3 TSL 5 BASIC20.67■□□□□ 0.9
Col18a1P39061 Msl1-204ENSMUST00000107487 2836 ntAPPRIS ALT2 TSL 2 BASIC20.67■□□□□ 0.9
Col18a1P39061 1700110K17Rik-202ENSMUST00000156511 927 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Col18a1P39061 Otx2os1-202ENSMUST00000183803 743 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Col18a1P39061 Crip2-202ENSMUST00000196015 772 ntTSL 3 BASIC20.67■□□□□ 0.9
Col18a1P39061 Plekha1-202ENSMUST00000075181 2301 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
Col18a1P39061 Krt6b-201ENSMUST00000023786 2226 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Col18a1P39061 Ppp3ca-202ENSMUST00000070198 4758 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Col18a1P39061 Ddx39-202ENSMUST00000109810 1794 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
Col18a1P39061 Gm10406-202ENSMUST00000170738 1955 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
Col18a1P39061 Park7-205ENSMUST00000105676 582 ntTSL 5 BASIC20.67■□□□□ 0.9
Col18a1P39061 Mansc4-202ENSMUST00000123367 542 ntAPPRIS ALT2 TSL 2 BASIC20.67■□□□□ 0.9
Col18a1P39061 Gm15853-201ENSMUST00000160268 556 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Col18a1P39061 Gm19265-201ENSMUST00000201818 894 ntTSL 3 BASIC20.67■□□□□ 0.9
Col18a1P39061 Hilpda-201ENSMUST00000054445 982 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Col18a1P39061 Gm10244-201ENSMUST00000090237 830 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Col18a1P39061 2810004N23Rik-201ENSMUST00000034465 2340 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Col18a1P39061 Slc5a10-203ENSMUST00000148584 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Col18a1P39061 Prdm8-201ENSMUST00000112959 4553 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Col18a1P39061 Fntb-206ENSMUST00000137826 1442 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
Col18a1P39061 Pgm3-202ENSMUST00000072585 1920 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Col18a1P39061 Tmem233-201ENSMUST00000111997 2477 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
Col18a1P39061 Ucma-204ENSMUST00000167607 785 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Col18a1P39061 Anapc5-218ENSMUST00000200645 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
Col18a1P39061 Arl6ip1-201ENSMUST00000032888 2171 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Retrieved 100 of 76,532 protein–RNA pairs in 40 ms