Protein–RNA interactions for Protein: P18828

Sdc1, Syndecan-1, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc1P18828 Adamts7-201ENSMUST00000113059 5379 ntAPPRIS ALT2 TSL 5 BASIC12.94□□□□□ -0.34
Sdc1P18828 Megf9-202ENSMUST00000107359 7924 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Sdc1P18828 Foxa1-201ENSMUST00000044380 3191 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Sdc1P18828 Zfp395-201ENSMUST00000066994 4229 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Sdc1P18828 Eaf1-201ENSMUST00000022446 4918 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Sdc1P18828 Epb41l1-202ENSMUST00000103135 6177 ntAPPRIS P1 TSL 5 BASIC12.93□□□□□ -0.34
Sdc1P18828 Anks1b-219ENSMUST00000182600 1697 ntTSL 5 BASIC12.93□□□□□ -0.34
Sdc1P18828 Lcmt2-201ENSMUST00000099486 2047 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
Sdc1P18828 Top3b-201ENSMUST00000023465 3073 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Sdc1P18828 Gm43951-201ENSMUST00000204457 2889 ntAPPRIS P1 BASIC12.93□□□□□ -0.34
Sdc1P18828 Efs-202ENSMUST00000227037 2540 ntBASIC12.93□□□□□ -0.34
Sdc1P18828 Kcnq2-220ENSMUST00000197015 8031 ntAPPRIS ALT2 TSL 5 BASIC12.93□□□□□ -0.34
Sdc1P18828 Apoa5-201ENSMUST00000034584 2312 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Sdc1P18828 Gm12620-201ENSMUST00000119791 1986 ntBASIC12.93□□□□□ -0.34
Sdc1P18828 Gm12612-201ENSMUST00000140182 1986 ntBASIC12.93□□□□□ -0.34
Sdc1P18828 Plin5-201ENSMUST00000019808 1986 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Sdc1P18828 Tgfa-201ENSMUST00000032066 4527 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Sdc1P18828 Rfc5-202ENSMUST00000111953 772 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
Sdc1P18828 Atp8a1-204ENSMUST00000113652 854 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
Sdc1P18828 Cracr2b-207ENSMUST00000170879 1158 ntAPPRIS ALT2 TSL 5 BASIC12.93□□□□□ -0.34
Sdc1P18828 Ypel3-210ENSMUST00000170882 1050 ntAPPRIS P1 TSL 3 BASIC12.93□□□□□ -0.34
Sdc1P18828 Coasy-201ENSMUST00000001806 2138 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Sdc1P18828 Alkbh1-212ENSMUST00000185301 408 ntBASIC12.93□□□□□ -0.34
Sdc1P18828 Gm26524-201ENSMUST00000192339 390 ntBASIC12.93□□□□□ -0.34
Sdc1P18828 Mrpl52-204ENSMUST00000199195 463 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
Sdc1P18828 Timp4-202ENSMUST00000205131 945 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
Sdc1P18828 Erh-205ENSMUST00000218740 981 ntTSL 2 BASIC12.93□□□□□ -0.34
Sdc1P18828 Psmb5-201ENSMUST00000022803 899 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Sdc1P18828 Crybb1-201ENSMUST00000031286 882 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Sdc1P18828 Smn1-202ENSMUST00000091321 223 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
Sdc1P18828 Nlrx1-203ENSMUST00000169651 3621 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Sdc1P18828 Snx19-201ENSMUST00000164099 5762 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Sdc1P18828 Ren1-201ENSMUST00000094556 1592 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Sdc1P18828 Sowaha-201ENSMUST00000104955 3702 ntAPPRIS P1 BASIC12.93□□□□□ -0.34
Sdc1P18828 Rcor1-202ENSMUST00000116388 2720 ntAPPRIS P2 TSL 1 (best) BASIC12.93□□□□□ -0.34
Sdc1P18828 A930029G22Rik-201ENSMUST00000181032 1710 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
Sdc1P18828 Mocos-201ENSMUST00000068006 2884 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Sdc1P18828 Tchp-201ENSMUST00000094441 2882 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Sdc1P18828 Anapc16-201ENSMUST00000020307 1379 ntTSL 2 BASIC12.93□□□□□ -0.34
Sdc1P18828 Gm26752-201ENSMUST00000181086 1537 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
Sdc1P18828 Tmem198b-201ENSMUST00000051011 2335 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Sdc1P18828 Tpr-203ENSMUST00000124973 7430 ntAPPRIS P2 TSL 1 (best) BASIC12.93□□□□□ -0.34
Sdc1P18828 Nf2-201ENSMUST00000053079 2470 ntAPPRIS ALT1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Sdc1P18828 Zfand3-201ENSMUST00000057897 2617 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
Sdc1P18828 Kif3a-201ENSMUST00000057330 2290 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
Sdc1P18828 Rad18-201ENSMUST00000068487 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC12.92□□□□□ -0.34
Sdc1P18828 Etl4-207ENSMUST00000114610 2863 ntAPPRIS ALT2 TSL 1 (best) BASIC12.92□□□□□ -0.34
Sdc1P18828 Gm16796-201ENSMUST00000126086 3172 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
Sdc1P18828 Gm6093-201ENSMUST00000221792 1623 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
Sdc1P18828 Kptn-201ENSMUST00000006178 1630 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Sdc1P18828 Fbxo5-201ENSMUST00000019907 1940 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Sdc1P18828 Nek7-202ENSMUST00000186017 5258 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Sdc1P18828 Ano10-201ENSMUST00000042546 2653 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Sdc1P18828 Srsf10-204ENSMUST00000105853 3058 ntAPPRIS P3 TSL 1 (best) BASIC12.92□□□□□ -0.34
Sdc1P18828 Tlcd1-204ENSMUST00000127587 1412 ntAPPRIS P3 TSL 1 (best) BASIC12.92□□□□□ -0.34
Sdc1P18828 Specc1-215ENSMUST00000202744 674 ntTSL 3 BASIC12.92□□□□□ -0.34
Sdc1P18828 Gm44899-201ENSMUST00000207451 391 ntTSL 3 BASIC12.92□□□□□ -0.34
Sdc1P18828 Twf2-201ENSMUST00000024047 1596 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Sdc1P18828 Csdc2-201ENSMUST00000038757 2490 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Sdc1P18828 Zfp553-202ENSMUST00000106312 3342 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Sdc1P18828 Nop53-201ENSMUST00000044158 3176 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Sdc1P18828 0610005C13Rik-207ENSMUST00000210866 2434 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
Sdc1P18828 Rragb-201ENSMUST00000039720 2258 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Sdc1P18828 Rnf217-201ENSMUST00000081989 11013 ntAPPRIS P1 TSL 5 BASIC12.92□□□□□ -0.34
Sdc1P18828 Tmem39a-214ENSMUST00000171687 2667 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
Sdc1P18828 Otop3-202ENSMUST00000106543 2369 ntAPPRIS ALT2 TSL 1 (best) BASIC12.92□□□□□ -0.34
Sdc1P18828 Myh14-202ENSMUST00000107899 6390 ntAPPRIS P3 TSL 1 (best) BASIC12.92□□□□□ -0.34
Sdc1P18828 Gal3st4-202ENSMUST00000161279 2059 ntAPPRIS P3 TSL 3 BASIC12.92□□□□□ -0.34
Sdc1P18828 Olfr718-ps1-203ENSMUST00000215102 4913 ntAPPRIS P5 TSL 5 BASIC12.92□□□□□ -0.34
Sdc1P18828 Slc35b2-202ENSMUST00000223987 1766 ntBASIC12.92□□□□□ -0.34
Sdc1P18828 Klhl9-201ENSMUST00000094993 4174 ntAPPRIS P1 BASIC12.91□□□□□ -0.34
Sdc1P18828 Sike1-201ENSMUST00000029447 7375 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Sdc1P18828 Nell1-201ENSMUST00000081872 6617 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Sdc1P18828 Orai3-203ENSMUST00000121504 2141 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
Sdc1P18828 Zbp1-201ENSMUST00000029018 1989 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Sdc1P18828 Dlx6-202ENSMUST00000160937 2216 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Sdc1P18828 Gm5091-201ENSMUST00000181658 1179 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
Sdc1P18828 AC099934.2-201ENSMUST00000196389 70 ntBASIC12.91□□□□□ -0.34
Sdc1P18828 AC156953.1-201ENSMUST00000196953 70 ntBASIC12.91□□□□□ -0.34
Sdc1P18828 AC157822.2-201ENSMUST00000200291 70 ntBASIC12.91□□□□□ -0.34
Sdc1P18828 Gm9731-201ENSMUST00000209480 747 ntBASIC12.91□□□□□ -0.34
Sdc1P18828 4930412O13Rik-201ENSMUST00000026889 1187 ntAPPRIS P5 TSL 1 (best) BASIC12.91□□□□□ -0.34
Sdc1P18828 Gm14066-201ENSMUST00000134801 2057 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
Sdc1P18828 Oxtr-201ENSMUST00000053306 4704 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Sdc1P18828 Pafah1b1-202ENSMUST00000102520 5789 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Sdc1P18828 Slit1-202ENSMUST00000166496 4556 ntTSL 5 BASIC12.91□□□□□ -0.34
Sdc1P18828 Trmo-201ENSMUST00000030015 1527 ntAPPRIS ALT2 TSL 1 (best) BASIC12.91□□□□□ -0.34
Sdc1P18828 Vash1-201ENSMUST00000021681 2599 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Sdc1P18828 Tsc2-217ENSMUST00000227745 5598 ntAPPRIS ALT2 BASIC12.91□□□□□ -0.34
Sdc1P18828 Pigv-201ENSMUST00000062118 3979 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Sdc1P18828 Ascl2-201ENSMUST00000009392 1605 ntAPPRIS P2 TSL 1 (best) BASIC12.91□□□□□ -0.34
Sdc1P18828 Chodl-201ENSMUST00000023568 2535 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Sdc1P18828 Efcab14-204ENSMUST00000106525 2792 ntAPPRIS ALT2 TSL 1 (best) BASIC12.91□□□□□ -0.34
Sdc1P18828 Cep19-202ENSMUST00000115168 1718 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Sdc1P18828 Syngr3-201ENSMUST00000007236 1965 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Sdc1P18828 Irx3os-201ENSMUST00000062522 2988 ntTSL 5 BASIC12.9□□□□□ -0.34
Sdc1P18828 Zfp703-202ENSMUST00000154256 3152 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Sdc1P18828 Kmt5c-202ENSMUST00000108582 2774 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Sdc1P18828 Ranbp3-201ENSMUST00000002445 2511 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Sdc1P18828 Tc2n-203ENSMUST00000160830 2005 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Retrieved 100 of 76,532 protein–RNA pairs in 28 ms