Protein–RNA interactions for Protein: P13297

Msx1, Homeobox protein MSX-1, mousemouse

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx1P13297 Gm36584-201ENSMUST00000209046 708 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Msx1P13297 Urah-207ENSMUST00000211372 688 ntAPPRIS P3 TSL 2 BASIC14.89□□□□□ -0.03
Msx1P13297 Urah-201ENSMUST00000026554 890 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
Msx1P13297 Coq8b-201ENSMUST00000003860 2181 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Msx1P13297 Sil1-201ENSMUST00000025215 1695 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Msx1P13297 Tfeb-204ENSMUST00000113288 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
Msx1P13297 Tmem50b-201ENSMUST00000023686 2347 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Msx1P13297 Slc13a3-202ENSMUST00000109279 3131 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
Msx1P13297 Ankrd13b-201ENSMUST00000037593 3105 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
Msx1P13297 Neu1-201ENSMUST00000007253 2474 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Msx1P13297 Phkg2-202ENSMUST00000121004 1840 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
Msx1P13297 Patz1-205ENSMUST00000110043 3702 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
Msx1P13297 Tmtc2-201ENSMUST00000061506 5629 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Msx1P13297 Olah-202ENSMUST00000115087 1479 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Msx1P13297 Rd3-203ENSMUST00000181512 1760 ntTSL 5 BASIC14.88□□□□□ -0.03
Msx1P13297 Disc1-206ENSMUST00000118942 2860 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
Msx1P13297 9530068E07Rik-201ENSMUST00000036952 2467 ntAPPRIS P2 TSL 1 (best) BASIC14.88□□□□□ -0.03
Msx1P13297 Anapc5-201ENSMUST00000086216 2760 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
Msx1P13297 Lias-202ENSMUST00000122026 1668 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Msx1P13297 Trmt112-202ENSMUST00000116551 985 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Msx1P13297 Ftl2-ps-201ENSMUST00000118517 552 ntBASIC14.88□□□□□ -0.03
Msx1P13297 Gm14140-201ENSMUST00000119999 995 ntBASIC14.88□□□□□ -0.03
Msx1P13297 Rnf170-208ENSMUST00000153528 1026 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
Msx1P13297 Egfl8-201ENSMUST00000015611 1150 ntAPPRIS P2 TSL 1 (best) BASIC14.88□□□□□ -0.03
Msx1P13297 Gm17114-201ENSMUST00000164716 511 ntTSL 3 BASIC14.88□□□□□ -0.03
Msx1P13297 Gm43935-201ENSMUST00000203569 1050 ntBASIC14.88□□□□□ -0.03
Msx1P13297 AC171004.1-201ENSMUST00000221723 664 ntTSL 3 BASIC14.88□□□□□ -0.03
Msx1P13297 AC154222.1-201ENSMUST00000223882 475 ntBASIC14.88□□□□□ -0.03
Msx1P13297 Gnmt-201ENSMUST00000002846 1035 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Msx1P13297 Chmp2a-201ENSMUST00000005711 949 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Msx1P13297 Gm15590-201ENSMUST00000078419 552 ntBASIC14.88□□□□□ -0.03
Msx1P13297 Egfl8-202ENSMUST00000097345 1064 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
Msx1P13297 Gm42918-201ENSMUST00000199249 1580 ntBASIC14.88□□□□□ -0.03
Msx1P13297 Tubb4b-201ENSMUST00000043584 1598 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Msx1P13297 Dtx2-204ENSMUST00000111145 2493 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
Msx1P13297 Snrk-201ENSMUST00000118886 4811 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Msx1P13297 Gm45723-201ENSMUST00000212135 1783 ntTSL 5 BASIC14.88□□□□□ -0.03
Msx1P13297 H2-Q4-201ENSMUST00000081435 1793 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Msx1P13297 Rmnd5b-201ENSMUST00000001081 1946 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Msx1P13297 Plpp7-201ENSMUST00000057423 1947 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Msx1P13297 Zbtb48-201ENSMUST00000066715 2218 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Msx1P13297 Flvcr1-201ENSMUST00000085635 4040 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Msx1P13297 Syt6-202ENSMUST00000117221 4394 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
Msx1P13297 Hs3st2-201ENSMUST00000084628 2278 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Msx1P13297 Cep152-201ENSMUST00000089776 5768 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Msx1P13297 AC132265.1-201ENSMUST00000219233 1665 ntBASIC14.87□□□□□ -0.03
Msx1P13297 Zmym3-204ENSMUST00000118092 1502 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
Msx1P13297 Gramd4-204ENSMUST00000138134 4292 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
Msx1P13297 Taf5l-201ENSMUST00000093039 2912 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Msx1P13297 Clvs2-203ENSMUST00000160299 2610 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
Msx1P13297 Lrrc45-201ENSMUST00000026139 2492 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Msx1P13297 Cask-204ENSMUST00000115438 8366 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
Msx1P13297 Gpc5-202ENSMUST00000175665 2187 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
Msx1P13297 Trip6-201ENSMUST00000024119 2168 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Msx1P13297 Snx2-201ENSMUST00000037850 2013 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Msx1P13297 Nrip1-201ENSMUST00000054178 4529 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Msx1P13297 Psen2-203ENSMUST00000111105 1575 ntAPPRIS P2 TSL 5 BASIC14.87□□□□□ -0.03
Msx1P13297 Gnb2-212ENSMUST00000150063 1569 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Msx1P13297 Ercc6l2-202ENSMUST00000021926 1592 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
Msx1P13297 Lrrtm1-203ENSMUST00000161677 2518 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Msx1P13297 Prss54-201ENSMUST00000052690 1438 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
Msx1P13297 Fam107b-203ENSMUST00000115053 688 ntAPPRIS P1 TSL 3 BASIC14.87□□□□□ -0.03
Msx1P13297 1700023H06Rik-201ENSMUST00000161006 1044 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
Msx1P13297 Hsd3b2-203ENSMUST00000177651 1122 ntAPPRIS P1 TSL 5 BASIC14.87□□□□□ -0.03
Msx1P13297 Calcb-203ENSMUST00000182816 706 ntAPPRIS ALT2 TSL 5 BASIC14.87□□□□□ -0.03
Msx1P13297 Gm29456-201ENSMUST00000189894 768 ntTSL 3 BASIC14.87□□□□□ -0.03
Msx1P13297 AV026068-213ENSMUST00000223675 1171 ntBASIC14.87□□□□□ -0.03
Msx1P13297 AC127349.1-201ENSMUST00000224590 266 ntBASIC14.87□□□□□ -0.03
Msx1P13297 Tsfm-201ENSMUST00000040560 1206 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Msx1P13297 Mdk-202ENSMUST00000069423 773 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Msx1P13297 Olfr1272-201ENSMUST00000099750 927 ntAPPRIS P1 BASIC14.87□□□□□ -0.03
Msx1P13297 Ogfr-201ENSMUST00000029087 2449 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Msx1P13297 Cd164-201ENSMUST00000019962 2922 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Msx1P13297 Syngr3-201ENSMUST00000007236 1965 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Msx1P13297 Ubr2-201ENSMUST00000113335 5691 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
Msx1P13297 Dnm2-204ENSMUST00000165766 3063 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Msx1P13297 Taf6l-206ENSMUST00000176610 2203 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Msx1P13297 Gm26891-201ENSMUST00000181644 2599 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Msx1P13297 Ccnyl1-202ENSMUST00000114077 3281 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Msx1P13297 2810410L24Rik-202ENSMUST00000155681 2615 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Msx1P13297 Cd40-202ENSMUST00000073707 1596 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
Msx1P13297 Edem3-201ENSMUST00000059498 6327 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Msx1P13297 Haspin-201ENSMUST00000052140 2810 ntAPPRIS P1 BASIC14.86□□□□□ -0.03
Msx1P13297 Ctsd-202ENSMUST00000151120 2127 ntAPPRIS P2 TSL 1 (best) BASIC14.86□□□□□ -0.03
Msx1P13297 Leprotl1-201ENSMUST00000033910 2879 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Msx1P13297 Ptprs-211ENSMUST00000223859 5588 ntBASIC14.86□□□□□ -0.03
Msx1P13297 Pum2-202ENSMUST00000111122 6311 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
Msx1P13297 Dlgap1-201ENSMUST00000060072 5420 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
Msx1P13297 Gdap1l1-203ENSMUST00000109421 1206 ntAPPRIS ALT1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Msx1P13297 Bhlhe41-202ENSMUST00000111703 744 ntTSL 3 BASIC14.86□□□□□ -0.03
Msx1P13297 Etfrf1-204ENSMUST00000111723 842 ntAPPRIS P1 TSL 5 BASIC14.86□□□□□ -0.03
Msx1P13297 Tmsb4x-202ENSMUST00000112175 864 ntTSL 2 BASIC14.86□□□□□ -0.03
Msx1P13297 Tmem141-205ENSMUST00000142087 795 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Msx1P13297 Lgals3-203ENSMUST00000146468 1072 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Msx1P13297 Rps13-ps1-201ENSMUST00000183478 538 ntBASIC14.86□□□□□ -0.03
Msx1P13297 9130024F11Rik-204ENSMUST00000187927 517 ntTSL 5 BASIC14.86□□□□□ -0.03
Msx1P13297 Wdyhv1-204ENSMUST00000226955 1094 ntBASIC14.86□□□□□ -0.03
Msx1P13297 2010003K11Rik-201ENSMUST00000048482 1165 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Msx1P13297 Trim7-202ENSMUST00000109213 2356 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Msx1P13297 Atxn7l3-201ENSMUST00000073234 3688 ntAPPRIS ALT1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Retrieved 100 of 76,532 protein–RNA pairs in 35.8 ms