Protein–RNA interactions for Protein: P11416

Rara, Retinoic acid receptor alpha, mousemouse

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RaraP11416 AC130713.1-201ENSMUST00000228853 1096 ntBASIC17■□□□□ 0.31
RaraP11416 Ecm1-201ENSMUST00000029753 1894 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
RaraP11416 Dnajb8-201ENSMUST00000061866 990 ntAPPRIS P1 BASIC17■□□□□ 0.31
RaraP11416 Ppt1-202ENSMUST00000097902 1191 ntTSL 1 (best) BASIC17■□□□□ 0.31
RaraP11416 P3h1-204ENSMUST00000121111 3188 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
RaraP11416 Nrg2-203ENSMUST00000115713 3001 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
RaraP11416 Urgcp-201ENSMUST00000053427 5527 ntAPPRIS ALT2 TSL 5 BASIC17■□□□□ 0.31
RaraP11416 1700052K11Rik-201ENSMUST00000190120 3708 ntBASIC17■□□□□ 0.31
RaraP11416 Tspoap1-202ENSMUST00000100644 7390 ntAPPRIS ALT2 TSL 5 BASIC17■□□□□ 0.31
RaraP11416 Cnksr3-201ENSMUST00000015346 3447 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
RaraP11416 Gm7609-201ENSMUST00000113402 1538 ntTSL 1 (best) BASIC17■□□□□ 0.31
RaraP11416 Tfap2c-201ENSMUST00000030391 2838 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
RaraP11416 Ankle2-206ENSMUST00000197188 4077 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
RaraP11416 Dnase1l2-201ENSMUST00000088506 1921 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
RaraP11416 Jph4-201ENSMUST00000022819 4489 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
RaraP11416 Ilvbl-204ENSMUST00000218271 1606 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
RaraP11416 Phospho2-202ENSMUST00000112266 2194 ntAPPRIS P1 TSL 3 BASIC16.99■□□□□ 0.31
RaraP11416 Fam69c-201ENSMUST00000052501 2153 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
RaraP11416 Dhodh-201ENSMUST00000123605 2039 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
RaraP11416 Gm14029-201ENSMUST00000151051 1348 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
RaraP11416 Gm2694-204ENSMUST00000181898 1303 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
RaraP11416 Fam159b-201ENSMUST00000043061 1310 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
RaraP11416 Narfl-201ENSMUST00000002350 2555 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
RaraP11416 Ttc14-202ENSMUST00000108210 2684 ntAPPRIS ALT2 TSL 5 BASIC16.99■□□□□ 0.31
RaraP11416 Vps37a-201ENSMUST00000098817 6379 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
RaraP11416 Gm4353-201ENSMUST00000111755 1559 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
RaraP11416 Efemp2-204ENSMUST00000165485 1557 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
RaraP11416 Nup35-201ENSMUST00000028382 1559 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
RaraP11416 Fgf8-205ENSMUST00000111927 843 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
RaraP11416 Zscan10-204ENSMUST00000118369 1006 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
RaraP11416 Hint3-203ENSMUST00000161074 875 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
RaraP11416 Hint2-201ENSMUST00000030192 610 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
RaraP11416 Cdk16-201ENSMUST00000033380 3120 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
RaraP11416 Nelfa-201ENSMUST00000030993 2580 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
RaraP11416 Rprd1a-201ENSMUST00000046206 4297 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
RaraP11416 Cyp4f13-204ENSMUST00000139353 1389 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
RaraP11416 Htr7-202ENSMUST00000164639 3057 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
RaraP11416 Gnb2-203ENSMUST00000111023 1471 ntTSL 5 BASIC16.99■□□□□ 0.31
RaraP11416 4932702P03Rik-201ENSMUST00000138447 1482 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
RaraP11416 Prelid1-201ENSMUST00000021942 2644 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
RaraP11416 Supt5-208ENSMUST00000209141 3755 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
RaraP11416 Fgfr1op2-204ENSMUST00000111663 2880 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
RaraP11416 Pbk-201ENSMUST00000022612 1720 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
RaraP11416 Actn3-201ENSMUST00000006626 2880 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
RaraP11416 Aifm1-202ENSMUST00000114945 2221 ntAPPRIS ALT2 TSL 5 BASIC16.98■□□□□ 0.31
RaraP11416 Mapk8ip3-201ENSMUST00000088345 5543 ntAPPRIS P3 TSL 1 (best) BASIC16.98■□□□□ 0.31
RaraP11416 Tpm2-202ENSMUST00000107913 2098 ntAPPRIS P3 TSL 1 (best) BASIC16.98■□□□□ 0.31
RaraP11416 Hoxb1-201ENSMUST00000019117 2086 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
RaraP11416 Zfp362-201ENSMUST00000071108 2674 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
RaraP11416 Dhx16-201ENSMUST00000025292 3351 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
RaraP11416 4933427J07Rik-201ENSMUST00000156275 1533 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
RaraP11416 Lck-202ENSMUST00000102596 2111 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
RaraP11416 Unc5a-202ENSMUST00000109994 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
RaraP11416 Flg-207ENSMUST00000180293 768 ntAPPRIS ALT2 BASIC16.98■□□□□ 0.31
RaraP11416 Gm29518-201ENSMUST00000190858 372 ntBASIC16.98■□□□□ 0.31
RaraP11416 Gm17808-201ENSMUST00000200859 894 ntBASIC16.98■□□□□ 0.31
RaraP11416 Mrpl36-202ENSMUST00000221730 717 ntAPPRIS P1 TSL 3 BASIC16.98■□□□□ 0.31
RaraP11416 Xpa-201ENSMUST00000030013 955 ntAPPRIS P2 TSL 1 (best) BASIC16.98■□□□□ 0.31
RaraP11416 Gm37812-201ENSMUST00000195216 2475 ntBASIC16.98■□□□□ 0.31
RaraP11416 9630013D21Rik-204ENSMUST00000156790 3096 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
RaraP11416 Bmp2k-201ENSMUST00000035635 7387 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
RaraP11416 Slc24a4-202ENSMUST00000159329 4465 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
RaraP11416 Ifngr2-201ENSMUST00000023687 3254 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
RaraP11416 Gata4-202ENSMUST00000118022 3374 ntAPPRIS P3 TSL 1 (best) BASIC16.98■□□□□ 0.31
RaraP11416 Smox-204ENSMUST00000110181 2299 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
RaraP11416 Gm10584-201ENSMUST00000207036 2628 ntBASIC16.98■□□□□ 0.31
RaraP11416 Gm29340-201ENSMUST00000188763 3854 ntBASIC16.97■□□□□ 0.31
RaraP11416 Cnbp-203ENSMUST00000113619 1661 ntAPPRIS P2 TSL 1 (best) BASIC16.97■□□□□ 0.31
RaraP11416 Rbfox3-203ENSMUST00000103023 2809 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
RaraP11416 Tpm1-215ENSMUST00000113705 1759 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
RaraP11416 C130073E24Rik-201ENSMUST00000210222 6144 ntTSL 5 BASIC16.97■□□□□ 0.31
RaraP11416 Casp8-201ENSMUST00000027189 2585 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
RaraP11416 Cgn-203ENSMUST00000153263 2210 ntTSL 2 BASIC16.97■□□□□ 0.31
RaraP11416 Bnipl-201ENSMUST00000098871 1414 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
RaraP11416 Lmtk2-201ENSMUST00000041804 8114 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
RaraP11416 Kcnn1-201ENSMUST00000110078 4047 ntAPPRIS P2 TSL 1 (best) BASIC16.97■□□□□ 0.31
RaraP11416 Kcnn1-202ENSMUST00000110081 4045 ntAPPRIS ALT2 TSL 5 BASIC16.97■□□□□ 0.31
RaraP11416 Celf3-204ENSMUST00000197558 2414 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
RaraP11416 Tmpo-201ENSMUST00000020123 3772 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
RaraP11416 Islr2-205ENSMUST00000170421 4071 ntAPPRIS P3 TSL 3 BASIC16.97■□□□□ 0.31
RaraP11416 Ccl27a-202ENSMUST00000108032 350 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
RaraP11416 Pqlc1-208ENSMUST00000144468 1050 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
RaraP11416 Fbxo9-203ENSMUST00000159099 1201 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
RaraP11416 Nsg1-204ENSMUST00000201363 820 ntAPPRIS P1 TSL 2 BASIC16.97■□□□□ 0.31
RaraP11416 Gm45328-201ENSMUST00000210942 917 ntBASIC16.97■□□□□ 0.31
RaraP11416 Mrpl28-201ENSMUST00000025014 1048 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
RaraP11416 Hist1h1a-201ENSMUST00000055770 741 ntAPPRIS P1 BASIC16.97■□□□□ 0.31
RaraP11416 Sept6-203ENSMUST00000115239 1845 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
RaraP11416 Apoa4-201ENSMUST00000034585 1815 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
RaraP11416 Tmem5-205ENSMUST00000140299 4793 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
RaraP11416 Hpca-203ENSMUST00000116442 1568 ntAPPRIS P1 TSL 3 BASIC16.97■□□□□ 0.31
RaraP11416 Tpd52-205ENSMUST00000120143 6317 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
RaraP11416 Git2-204ENSMUST00000112185 5032 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
RaraP11416 Nhlh2-202ENSMUST00000196324 2647 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
RaraP11416 Camk2b-205ENSMUST00000093355 1973 ntTSL 5 BASIC16.97■□□□□ 0.31
RaraP11416 Slc25a22-201ENSMUST00000019226 2811 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
RaraP11416 4833422C13Rik-201ENSMUST00000099331 2083 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
RaraP11416 Rcbtb1-201ENSMUST00000022551 3957 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
RaraP11416 Ogfod3-201ENSMUST00000026169 1308 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
RaraP11416 Slc35f1-201ENSMUST00000105473 4941 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Retrieved 100 of 76,532 protein–RNA pairs in 51.2 ms