Protein–RNA interactions for Protein: E9Q735

Ube4a, Ubiquitin conjugation factor E4 A, mousemouse

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ube4aE9Q735 Akp-ps1-202ENSMUST00000212812 1959 ntTSL 5 BASIC18.81■□□□□ 0.6
Ube4aE9Q735 Plcl2-201ENSMUST00000043938 4050 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Ube4aE9Q735 Actr8-201ENSMUST00000016115 2119 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Ube4aE9Q735 Sf3b4-201ENSMUST00000076372 1915 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Ube4aE9Q735 Cant1-204ENSMUST00000106288 2873 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
Ube4aE9Q735 Rbpms-203ENSMUST00000053251 2466 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Ube4aE9Q735 Ifrd2-201ENSMUST00000010192 2056 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Ube4aE9Q735 U2af2-209ENSMUST00000209099 2088 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
Ube4aE9Q735 Slc39a14-201ENSMUST00000022688 2098 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Ube4aE9Q735 Lman1-202ENSMUST00000120461 2208 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Ube4aE9Q735 Zmiz1-201ENSMUST00000007961 5397 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Ube4aE9Q735 Lrch3-203ENSMUST00000135193 2794 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
Ube4aE9Q735 Fignl2-201ENSMUST00000178140 4206 ntAPPRIS P1 BASIC18.8■□□□□ 0.6
Ube4aE9Q735 Zfp688-201ENSMUST00000106300 1015 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
Ube4aE9Q735 Taf3-202ENSMUST00000114906 583 ntTSL 2 BASIC18.8■□□□□ 0.6
Ube4aE9Q735 Gm21984-201ENSMUST00000123117 822 ntTSL 5 BASIC18.8■□□□□ 0.6
Ube4aE9Q735 Gm44081-201ENSMUST00000204406 643 ntTSL 3 BASIC18.8■□□□□ 0.6
Ube4aE9Q735 Thap2-203ENSMUST00000218989 527 ntBASIC18.8■□□□□ 0.6
Ube4aE9Q735 Gm8396-201ENSMUST00000057361 823 ntBASIC18.8■□□□□ 0.6
Ube4aE9Q735 Sfxn5-202ENSMUST00000059034 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Ube4aE9Q735 Tub-201ENSMUST00000033341 5997 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Ube4aE9Q735 Mcl1-201ENSMUST00000037947 3418 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Ube4aE9Q735 Pex6-201ENSMUST00000002840 3200 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Ube4aE9Q735 Cadps2-212ENSMUST00000163871 4969 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
Ube4aE9Q735 Bnip2-201ENSMUST00000034754 2464 ntAPPRIS P4 TSL 1 (best) BASIC18.8■□□□□ 0.6
Ube4aE9Q735 Matk-203ENSMUST00000119547 1916 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Ube4aE9Q735 Gm19439-201ENSMUST00000198195 2273 ntBASIC18.8■□□□□ 0.6
Ube4aE9Q735 Mllt11-201ENSMUST00000065482 1923 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Ube4aE9Q735 Tead3-201ENSMUST00000114799 2448 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Ube4aE9Q735 Pcnx-204ENSMUST00000221721 8318 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
Ube4aE9Q735 Tmem94-202ENSMUST00000103033 5238 ntAPPRIS P2 TSL 2 BASIC18.79■□□□□ 0.6
Ube4aE9Q735 Papola-203ENSMUST00000163473 2544 ntTSL 5 BASIC18.79■□□□□ 0.6
Ube4aE9Q735 Mbnl1-201ENSMUST00000099087 5655 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Ube4aE9Q735 Tmem50b-201ENSMUST00000023686 2347 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Ube4aE9Q735 Slc15a3-201ENSMUST00000025646 2345 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Ube4aE9Q735 Ube2i-207ENSMUST00000172868 2755 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Ube4aE9Q735 Bend6-204ENSMUST00000129464 1750 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Ube4aE9Q735 Gm20708-201ENSMUST00000132298 1780 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
Ube4aE9Q735 Slc25a23-201ENSMUST00000040280 3362 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Ube4aE9Q735 Mrps2-201ENSMUST00000038600 2080 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Ube4aE9Q735 Ifna12-201ENSMUST00000102806 797 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
Ube4aE9Q735 Lyrm1-203ENSMUST00000106517 1279 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Ube4aE9Q735 Pcp2-203ENSMUST00000133459 470 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Ube4aE9Q735 Bnipl-204ENSMUST00000137250 1251 ntTSL 5 BASIC18.79■□□□□ 0.6
Ube4aE9Q735 Fhad1os2-201ENSMUST00000152351 945 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Ube4aE9Q735 Pcp2-201ENSMUST00000004749 495 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Ube4aE9Q735 Cyp2d40-201ENSMUST00000055721 1161 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Ube4aE9Q735 Klk15-201ENSMUST00000068625 845 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Ube4aE9Q735 Gm2109-201ENSMUST00000189326 1409 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Ube4aE9Q735 Fam126b-201ENSMUST00000038372 2385 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Ube4aE9Q735 Susd3-202ENSMUST00000058196 1418 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
Ube4aE9Q735 Tmem88-201ENSMUST00000050140 1582 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Ube4aE9Q735 Ntng1-203ENSMUST00000106570 1386 ntTSL 5 BASIC18.79■□□□□ 0.6
Ube4aE9Q735 4933426K07Rik-201ENSMUST00000143009 1548 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Ube4aE9Q735 Fars2-201ENSMUST00000021857 2125 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Ube4aE9Q735 Nodal-201ENSMUST00000049339 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Ube4aE9Q735 Chd5-202ENSMUST00000030775 9486 ntAPPRIS P3 TSL 5 BASIC18.78■□□□□ 0.6
Ube4aE9Q735 4933415F23Rik-201ENSMUST00000073179 1781 ntAPPRIS P1 BASIC18.78■□□□□ 0.6
Ube4aE9Q735 Esyt2-205ENSMUST00000220816 4287 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Ube4aE9Q735 A230072E10Rik-203ENSMUST00000175942 2940 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Ube4aE9Q735 Tjap1-214ENSMUST00000225413 2189 ntAPPRIS ALT2 BASIC18.78■□□□□ 0.6
Ube4aE9Q735 Tubgcp4-203ENSMUST00000110658 4250 ntAPPRIS ALT1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Ube4aE9Q735 Cnot9-201ENSMUST00000087215 3268 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Ube4aE9Q735 Meig1-204ENSMUST00000115083 567 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
Ube4aE9Q735 Wnt5b-202ENSMUST00000118120 2115 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Ube4aE9Q735 Gm15758-201ENSMUST00000161681 695 ntTSL 5 BASIC18.78■□□□□ 0.6
Ube4aE9Q735 Emp3-202ENSMUST00000164119 784 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Ube4aE9Q735 Gm34397-203ENSMUST00000214991 630 ntTSL 5 BASIC18.78■□□□□ 0.6
Ube4aE9Q735 Ltbp4-202ENSMUST00000108369 5377 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
Ube4aE9Q735 Gbe1-201ENSMUST00000023393 2846 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
Ube4aE9Q735 Hoxc9-201ENSMUST00000001706 2374 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Ube4aE9Q735 Plaa-201ENSMUST00000107107 2784 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Ube4aE9Q735 Lrch3-211ENSMUST00000170899 2752 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
Ube4aE9Q735 Fbrsl1-201ENSMUST00000056124 2700 ntTSL 2 BASIC18.78■□□□□ 0.6
Ube4aE9Q735 Myc-202ENSMUST00000159327 2186 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Ube4aE9Q735 Tnip2-203ENSMUST00000114359 1642 ntTSL 5 BASIC18.78■□□□□ 0.6
Ube4aE9Q735 Gm7292-201ENSMUST00000194706 2527 ntBASIC18.77■□□□□ 0.6
Ube4aE9Q735 Mef2b-204ENSMUST00000110146 1342 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
Ube4aE9Q735 Majin-202ENSMUST00000113528 1562 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Ube4aE9Q735 Zfp358-203ENSMUST00000208423 2200 ntAPPRIS P1 BASIC18.77■□□□□ 0.6
Ube4aE9Q735 Gm12008-201ENSMUST00000117791 755 ntBASIC18.77■□□□□ 0.6
Ube4aE9Q735 Hoxb8-203ENSMUST00000168043 1141 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
Ube4aE9Q735 Gm20646-202ENSMUST00000199521 660 ntTSL 3 BASIC18.77■□□□□ 0.6
Ube4aE9Q735 9430081H08Rik-201ENSMUST00000217460 818 ntBASIC18.77■□□□□ 0.6
Ube4aE9Q735 AC155252.2-201ENSMUST00000226946 680 ntBASIC18.77■□□□□ 0.6
Ube4aE9Q735 Cfdp1-201ENSMUST00000034432 1178 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Ube4aE9Q735 H2-K1-202ENSMUST00000087189 579 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Ube4aE9Q735 1700086L19Rik-201ENSMUST00000095617 706 ntBASIC18.77■□□□□ 0.6
Ube4aE9Q735 Rd3-203ENSMUST00000181512 1760 ntTSL 5 BASIC18.77■□□□□ 0.6
Ube4aE9Q735 A230060F14Rik-202ENSMUST00000190739 1889 ntBASIC18.77■□□□□ 0.6
Ube4aE9Q735 Ddx49-201ENSMUST00000008004 2137 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Ube4aE9Q735 Dpys-201ENSMUST00000022915 2466 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
Ube4aE9Q735 BC024978-204ENSMUST00000179391 1748 ntAPPRIS P3 TSL 5 BASIC18.77■□□□□ 0.59
Ube4aE9Q735 Fam133b-201ENSMUST00000115527 1491 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.59
Ube4aE9Q735 Anxa3-201ENSMUST00000031447 1595 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Ube4aE9Q735 Gpc5-202ENSMUST00000175665 2187 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Ube4aE9Q735 Cuedc2-202ENSMUST00000167861 1941 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
Ube4aE9Q735 Shisa2-201ENSMUST00000053949 3119 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Ube4aE9Q735 Adnp-202ENSMUST00000088001 4932 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Ube4aE9Q735 Chst3-203ENSMUST00000167915 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
Retrieved 100 of 76,532 protein–RNA pairs in 29.2 ms