Protein–RNA interactions for Protein: B1AR17

Chd3, Chromodomain helicase DNA-binding protein 3, mousemouse

Predictions only

Length 2,055 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd3B1AR17 Gm3739-201ENSMUST00000165744 2011 ntAPPRIS P1 TSL 5 BASIC15.36■□□□□ 0.05
Chd3B1AR17 Nodal-201ENSMUST00000049339 2095 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Chd3B1AR17 Gm26761-201ENSMUST00000180650 2192 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
Chd3B1AR17 Hs3st2-201ENSMUST00000084628 2278 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Chd3B1AR17 Ube2j2-213ENSMUST00000166489 3339 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Chd3B1AR17 Kif7-202ENSMUST00000178048 4524 ntAPPRIS ALT2 TSL 1 (best) BASIC15.36■□□□□ 0.05
Chd3B1AR17 Gm14722-201ENSMUST00000118943 689 ntBASIC15.36■□□□□ 0.05
Chd3B1AR17 Ube2k-201ENSMUST00000142407 4893 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Chd3B1AR17 4933426K07Rik-201ENSMUST00000143009 1548 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
Chd3B1AR17 Gm26664-201ENSMUST00000181140 705 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
Chd3B1AR17 Ccnd3-208ENSMUST00000182539 931 ntTSL 2 BASIC15.36■□□□□ 0.05
Chd3B1AR17 Dph5-204ENSMUST00000189799 1558 ntAPPRIS P1 TSL 5 BASIC15.36■□□□□ 0.05
Chd3B1AR17 Gm45167-201ENSMUST00000208007 322 ntBASIC15.36■□□□□ 0.05
Chd3B1AR17 Mal-202ENSMUST00000028854 2778 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Chd3B1AR17 Rbpms-202ENSMUST00000033995 1039 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Chd3B1AR17 Hook2-201ENSMUST00000064495 2580 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Chd3B1AR17 Gnas-202ENSMUST00000087871 3903 ntAPPRIS P4 TSL 1 (best) BASIC15.35■□□□□ 0.05
Chd3B1AR17 Usp6nl-202ENSMUST00000114937 7484 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
Chd3B1AR17 Pspc1-202ENSMUST00000163924 2863 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
Chd3B1AR17 Apeh-206ENSMUST00000193254 2518 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Chd3B1AR17 Simc1-201ENSMUST00000118072 2116 ntAPPRIS ALT2 TSL 5 BASIC15.35■□□□□ 0.05
Chd3B1AR17 Spdya-201ENSMUST00000064420 1877 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
Chd3B1AR17 Nptxr-203ENSMUST00000175858 4948 ntAPPRIS P2 TSL 1 (best) BASIC15.35■□□□□ 0.05
Chd3B1AR17 Zpr1-206ENSMUST00000156440 2984 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Chd3B1AR17 Gstt2-201ENSMUST00000038257 1370 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Chd3B1AR17 Dynlt1b-201ENSMUST00000179569 768 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Chd3B1AR17 Gm44123-201ENSMUST00000204662 577 ntTSL 5 BASIC15.35■□□□□ 0.05
Chd3B1AR17 Psmb4-201ENSMUST00000005923 1183 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Chd3B1AR17 H2-D1-202ENSMUST00000172785 2102 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Chd3B1AR17 Emx2-201ENSMUST00000062216 2916 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Chd3B1AR17 Irak1-201ENSMUST00000033769 2890 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
Chd3B1AR17 Haspin-201ENSMUST00000052140 2810 ntAPPRIS P1 BASIC15.35■□□□□ 0.05
Chd3B1AR17 Nrbf2-201ENSMUST00000077839 1813 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Chd3B1AR17 AC131104.1-201ENSMUST00000222118 1739 ntTSL 5 BASIC15.35■□□□□ 0.05
Chd3B1AR17 Cadm3-201ENSMUST00000005470 2518 ntTSL 5 BASIC15.35■□□□□ 0.05
Chd3B1AR17 Cobll1-205ENSMUST00000112431 5024 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
Chd3B1AR17 Ina-201ENSMUST00000037636 3240 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Chd3B1AR17 Ehmt2-204ENSMUST00000114033 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
Chd3B1AR17 Phactr2-203ENSMUST00000105545 8556 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
Chd3B1AR17 Map3k1-201ENSMUST00000109267 6978 ntAPPRIS P1 TSL 2 BASIC15.34■□□□□ 0.05
Chd3B1AR17 Zfp821-203ENSMUST00000212000 2081 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Chd3B1AR17 Sox14-201ENSMUST00000054819 2065 ntAPPRIS P1 BASIC15.34■□□□□ 0.05
Chd3B1AR17 Syf2-201ENSMUST00000030622 1369 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Chd3B1AR17 Gm13597-201ENSMUST00000121239 375 ntBASIC15.34■□□□□ 0.05
Chd3B1AR17 Gemin7-204ENSMUST00000122055 609 ntAPPRIS P1 TSL 3 BASIC15.34■□□□□ 0.05
Chd3B1AR17 Gm20680-201ENSMUST00000176881 789 ntTSL 5 BASIC15.34■□□□□ 0.05
Chd3B1AR17 Gm37935-201ENSMUST00000192012 982 ntBASIC15.34■□□□□ 0.05
Chd3B1AR17 Cmtm3-204ENSMUST00000212081 850 ntAPPRIS P1 TSL 5 BASIC15.34■□□□□ 0.05
Chd3B1AR17 Wwox-207ENSMUST00000160862 1715 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
Chd3B1AR17 Parp6-201ENSMUST00000026267 2709 ntAPPRIS P1 TSL 5 BASIC15.34■□□□□ 0.05
Chd3B1AR17 Gm19430-201ENSMUST00000193847 2137 ntBASIC15.34■□□□□ 0.05
Chd3B1AR17 Plekha4-207ENSMUST00000211227 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
Chd3B1AR17 Ankrd13b-201ENSMUST00000037593 3105 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
Chd3B1AR17 Rffl-206ENSMUST00000108173 3489 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Chd3B1AR17 Lefty2-201ENSMUST00000085797 2473 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Chd3B1AR17 Zranb2-203ENSMUST00000106058 2924 ntAPPRIS P2 TSL 1 (best) BASIC15.34■□□□□ 0.05
Chd3B1AR17 Cuedc2-202ENSMUST00000167861 1941 ntAPPRIS P1 TSL 5 BASIC15.34■□□□□ 0.05
Chd3B1AR17 Vldlr-202ENSMUST00000047645 3260 ntTSL 5 BASIC15.34■□□□□ 0.05
Chd3B1AR17 Gm11873-201ENSMUST00000117877 1304 ntBASIC15.34■□□□□ 0.05
Chd3B1AR17 Gm5069-201ENSMUST00000050581 1328 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
Chd3B1AR17 Gm15635-203ENSMUST00000148972 554 ntTSL 2 BASIC15.34■□□□□ 0.05
Chd3B1AR17 Washc3-202ENSMUST00000171151 837 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
Chd3B1AR17 Fahd2a-201ENSMUST00000028848 1211 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Chd3B1AR17 Gm37166-201ENSMUST00000195473 2474 ntBASIC15.34■□□□□ 0.05
Chd3B1AR17 Rhobtb1-202ENSMUST00000067908 4422 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Chd3B1AR17 Cacna1b-202ENSMUST00000070864 9655 ntAPPRIS P3 TSL 5 BASIC15.34■□□□□ 0.05
Chd3B1AR17 Yipf2-202ENSMUST00000078572 1894 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
Chd3B1AR17 Arhgap39-202ENSMUST00000077821 4494 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.05
Chd3B1AR17 Wnt5b-201ENSMUST00000117171 2174 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
Chd3B1AR17 AC154231.1-201ENSMUST00000220564 2175 ntBASIC15.33■□□□□ 0.05
Chd3B1AR17 Adnp2-201ENSMUST00000066743 5012 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
Chd3B1AR17 Ogfr-201ENSMUST00000029087 2449 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
Chd3B1AR17 Zdhhc25-201ENSMUST00000066949 1368 ntAPPRIS P1 BASIC15.33■□□□□ 0.05
Chd3B1AR17 Rcbtb2-226ENSMUST00000171767 2692 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Chd3B1AR17 Tfeb-204ENSMUST00000113288 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
Chd3B1AR17 Mink1-205ENSMUST00000102559 4865 ntAPPRIS P4 TSL 1 (best) BASIC15.33■□□□□ 0.04
Chd3B1AR17 Cpt2-203ENSMUST00000106720 1015 ntTSL 2 BASIC15.33■□□□□ 0.04
Chd3B1AR17 Izumo1r-203ENSMUST00000117620 1095 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Chd3B1AR17 Triqk-201ENSMUST00000143186 888 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Chd3B1AR17 Gm27300-201ENSMUST00000184085 97 ntBASIC15.33■□□□□ 0.04
Chd3B1AR17 Gm27702-201ENSMUST00000184512 56 ntBASIC15.33■□□□□ 0.04
Chd3B1AR17 Gm27335-201ENSMUST00000184758 97 ntBASIC15.33■□□□□ 0.04
Chd3B1AR17 Spr-ps1-202ENSMUST00000186281 706 ntTSL 2 BASIC15.33■□□□□ 0.04
Chd3B1AR17 Gm43575-201ENSMUST00000196420 516 ntBASIC15.33■□□□□ 0.04
Chd3B1AR17 Gm43073-201ENSMUST00000198200 1189 ntBASIC15.33■□□□□ 0.04
Chd3B1AR17 Gm20337-201ENSMUST00000219062 1118 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Chd3B1AR17 Rpl8-201ENSMUST00000004072 862 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Chd3B1AR17 Panx1-202ENSMUST00000164273 5732 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Chd3B1AR17 Lck-202ENSMUST00000102596 2111 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Chd3B1AR17 Gopc-202ENSMUST00000105475 4317 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.04
Chd3B1AR17 Dmpk-202ENSMUST00000108473 2588 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
Chd3B1AR17 Prss54-201ENSMUST00000052690 1438 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
Chd3B1AR17 Rragd-201ENSMUST00000029946 5055 ntTSL 5 BASIC15.33■□□□□ 0.04
Chd3B1AR17 Tnfaip2-202ENSMUST00000109792 3284 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
Chd3B1AR17 Zkscan17-202ENSMUST00000101150 3771 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Chd3B1AR17 Rnf170-209ENSMUST00000209300 1881 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Chd3B1AR17 Dffb-201ENSMUST00000030893 2093 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Chd3B1AR17 Vps25-203ENSMUST00000100414 1220 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Chd3B1AR17 Naa10-203ENSMUST00000114387 979 ntAPPRIS ALT2 TSL 2 BASIC15.32■□□□□ 0.04
Chd3B1AR17 Rasd2-201ENSMUST00000132133 1299 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Retrieved 100 of 76,532 protein–RNA pairs in 11.4 ms