Protein–RNA interactions for Protein: Q9ERG0

Lima1, LIM domain and actin-binding protein 1, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lima1Q9ERG0 Megf11-210ENSMUST00000164113 6018 ntTSL 5 BASIC15.58■□□□□ 0.08
Lima1Q9ERG0 Zfp184-202ENSMUST00000102978 3198 ntAPPRIS P1 TSL 5 BASIC15.58■□□□□ 0.08
Lima1Q9ERG0 Nr1h3-202ENSMUST00000111354 1738 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Lima1Q9ERG0 Mex3c-201ENSMUST00000091852 3738 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Lima1Q9ERG0 Zfp655-206ENSMUST00000200039 1765 ntAPPRIS ALT1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Lima1Q9ERG0 Gm1673-202ENSMUST00000114382 451 ntAPPRIS ALT2 TSL 2 BASIC15.58■□□□□ 0.08
Lima1Q9ERG0 Gm11336-201ENSMUST00000118168 334 ntBASIC15.58■□□□□ 0.08
Lima1Q9ERG0 Tmem80-202ENSMUST00000126510 959 ntAPPRIS P1 TSL 5 BASIC15.58■□□□□ 0.08
Lima1Q9ERG0 2210408F21Rik-208ENSMUST00000144612 450 ntTSL 3 BASIC15.58■□□□□ 0.08
Lima1Q9ERG0 Rapgef3os1-201ENSMUST00000149373 483 ntTSL 3 BASIC15.58■□□□□ 0.08
Lima1Q9ERG0 4933421O10Rik-201ENSMUST00000155691 3847 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
Lima1Q9ERG0 AC122465.1-201ENSMUST00000220813 1209 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
Lima1Q9ERG0 Iscu-201ENSMUST00000026937 957 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Lima1Q9ERG0 4933427E11Rik-201ENSMUST00000056711 1214 ntBASIC15.58■□□□□ 0.08
Lima1Q9ERG0 Coa6-201ENSMUST00000059093 747 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Lima1Q9ERG0 Ly6h-202ENSMUST00000065417 985 ntAPPRIS ALT1 TSL 2 BASIC15.58■□□□□ 0.08
Lima1Q9ERG0 Gm9987-201ENSMUST00000069768 567 ntBASIC15.58■□□□□ 0.08
Lima1Q9ERG0 Exosc5-201ENSMUST00000079634 1020 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Lima1Q9ERG0 Dmrtb1-201ENSMUST00000069271 1861 ntAPPRIS P1 TSL 5 BASIC15.58■□□□□ 0.08
Lima1Q9ERG0 Isyna1-204ENSMUST00000210005 1914 ntAPPRIS P1 TSL 5 BASIC15.58■□□□□ 0.08
Lima1Q9ERG0 Spns1-203ENSMUST00000119846 2017 ntTSL 5 BASIC15.58■□□□□ 0.08
Lima1Q9ERG0 Wdr55-201ENSMUST00000049323 1498 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Lima1Q9ERG0 Ttc14-202ENSMUST00000108210 2684 ntAPPRIS ALT2 TSL 5 BASIC15.58■□□□□ 0.08
Lima1Q9ERG0 Ttc13-210ENSMUST00000214828 3301 ntAPPRIS P1 TSL 5 BASIC15.58■□□□□ 0.08
Lima1Q9ERG0 Esr1-202ENSMUST00000105588 2733 ntTSL 5 BASIC15.58■□□□□ 0.08
Lima1Q9ERG0 Gm26752-201ENSMUST00000181086 1537 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
Lima1Q9ERG0 Fam149b-216ENSMUST00000225942 2151 ntAPPRIS ALT2 BASIC15.58■□□□□ 0.08
Lima1Q9ERG0 Trappc12-203ENSMUST00000170994 2818 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
Lima1Q9ERG0 Ginm1-201ENSMUST00000039763 1557 ntAPPRIS P3 TSL 1 (best) BASIC15.58■□□□□ 0.08
Lima1Q9ERG0 Grin1os-201ENSMUST00000129723 2891 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
Lima1Q9ERG0 Arfip1-202ENSMUST00000107687 1714 ntTSL 5 BASIC15.57■□□□□ 0.08
Lima1Q9ERG0 P3h1-204ENSMUST00000121111 3188 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
Lima1Q9ERG0 Ube2j1-202ENSMUST00000124992 3530 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Lima1Q9ERG0 Phldb1-211ENSMUST00000135436 2844 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
Lima1Q9ERG0 Tfap2a-203ENSMUST00000223869 2037 ntBASIC15.57■□□□□ 0.08
Lima1Q9ERG0 Sp8-201ENSMUST00000063918 4478 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Lima1Q9ERG0 Pspc1-202ENSMUST00000163924 2863 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
Lima1Q9ERG0 Zfp64-202ENSMUST00000109161 1009 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
Lima1Q9ERG0 Pdxdc1-203ENSMUST00000115803 1268 ntAPPRIS ALT2 TSL 5 BASIC15.57■□□□□ 0.08
Lima1Q9ERG0 4930405A21Rik-202ENSMUST00000139042 994 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
Lima1Q9ERG0 Runx2-213ENSMUST00000162878 2987 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
Lima1Q9ERG0 4930544D05Rik-204ENSMUST00000180052 755 ntAPPRIS ALT2 TSL 5 BASIC15.57■□□□□ 0.08
Lima1Q9ERG0 4930579K19Rik-202ENSMUST00000190541 632 ntTSL 2 BASIC15.57■□□□□ 0.08
Lima1Q9ERG0 Gm36967-201ENSMUST00000193814 266 ntBASIC15.57■□□□□ 0.08
Lima1Q9ERG0 Snrnp35-201ENSMUST00000031349 1115 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Lima1Q9ERG0 Sox6os-201ENSMUST00000032900 420 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
Lima1Q9ERG0 Tmem35b-201ENSMUST00000094712 1120 ntAPPRIS P2 TSL 1 (best) BASIC15.57■□□□□ 0.08
Lima1Q9ERG0 Serpine2-201ENSMUST00000027467 2210 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Lima1Q9ERG0 Sybu-207ENSMUST00000227305 3124 ntAPPRIS ALT2 BASIC15.57■□□□□ 0.08
Lima1Q9ERG0 Arrb2-203ENSMUST00000102563 1352 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Lima1Q9ERG0 Arf3-201ENSMUST00000053183 3579 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Lima1Q9ERG0 Poli-201ENSMUST00000043286 2591 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
Lima1Q9ERG0 Kif26a-201ENSMUST00000128402 6918 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Lima1Q9ERG0 Prrg2-208ENSMUST00000210690 1623 ntAPPRIS P2 TSL 1 (best) BASIC15.57■□□□□ 0.08
Lima1Q9ERG0 Nid1-201ENSMUST00000005532 6091 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Lima1Q9ERG0 Foxg1-204ENSMUST00000179669 3973 ntAPPRIS P1 BASIC15.57■□□□□ 0.08
Lima1Q9ERG0 Rnf114-202ENSMUST00000109214 3001 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Lima1Q9ERG0 Casp8ap2-201ENSMUST00000029950 6799 ntAPPRIS P2 TSL 1 (best) BASIC15.57■□□□□ 0.08
Lima1Q9ERG0 Spdya-201ENSMUST00000064420 1877 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
Lima1Q9ERG0 Tbc1d1-203ENSMUST00000119756 4760 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
Lima1Q9ERG0 Gm14066-201ENSMUST00000134801 2057 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
Lima1Q9ERG0 Snx11-201ENSMUST00000021246 2551 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Lima1Q9ERG0 Pik3ap1-201ENSMUST00000059672 2615 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Lima1Q9ERG0 Gm45133-201ENSMUST00000207548 2773 ntBASIC15.56■□□□□ 0.08
Lima1Q9ERG0 Vps51-204ENSMUST00000159832 3048 ntAPPRIS P1 TSL 5 BASIC15.56■□□□□ 0.08
Lima1Q9ERG0 Flrt2-202ENSMUST00000110117 3223 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Lima1Q9ERG0 1810012K08Rik-201ENSMUST00000155199 574 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
Lima1Q9ERG0 Gm5091-201ENSMUST00000181658 1179 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
Lima1Q9ERG0 Gm18421-201ENSMUST00000204122 625 ntBASIC15.56■□□□□ 0.08
Lima1Q9ERG0 Gm9745-201ENSMUST00000021573 684 ntAPPRIS P1 TSL 5 BASIC15.56■□□□□ 0.08
Lima1Q9ERG0 Ttc32-203ENSMUST00000219488 768 ntTSL 3 BASIC15.56■□□□□ 0.08
Lima1Q9ERG0 Gm18032-201ENSMUST00000222541 538 ntBASIC15.56■□□□□ 0.08
Lima1Q9ERG0 Myh14-204ENSMUST00000207775 6499 ntAPPRIS ALT2 TSL 5 BASIC15.56■□□□□ 0.08
Lima1Q9ERG0 Spg21-202ENSMUST00000213957 1302 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
Lima1Q9ERG0 Dusp12-201ENSMUST00000027970 1374 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Lima1Q9ERG0 Il9r-204ENSMUST00000142396 1542 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
Lima1Q9ERG0 Gmppa-201ENSMUST00000037796 1539 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Lima1Q9ERG0 Lamp2-201ENSMUST00000016678 1769 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
Lima1Q9ERG0 Cpq-201ENSMUST00000042167 1923 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Lima1Q9ERG0 Crem-234ENSMUST00000154470 1996 ntTSL 5 BASIC15.56■□□□□ 0.08
Lima1Q9ERG0 Cryzl1-201ENSMUST00000073466 1965 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
Lima1Q9ERG0 Mmp28-203ENSMUST00000108137 2451 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
Lima1Q9ERG0 Dsn1-202ENSMUST00000103130 2636 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Lima1Q9ERG0 Cadm2-203ENSMUST00000120898 2768 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
Lima1Q9ERG0 Ncf1-201ENSMUST00000016094 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
Lima1Q9ERG0 Stxbp1-201ENSMUST00000050000 3892 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Lima1Q9ERG0 C2cd2-201ENSMUST00000170757 6555 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Lima1Q9ERG0 Ndst2-202ENSMUST00000223679 3907 ntAPPRIS P1 BASIC15.55■□□□□ 0.08
Lima1Q9ERG0 Gm10676-201ENSMUST00000098778 3221 ntBASIC15.55■□□□□ 0.08
Lima1Q9ERG0 Ecel1-203ENSMUST00000160810 2898 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Lima1Q9ERG0 Ovca2-201ENSMUST00000071562 2670 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Lima1Q9ERG0 Gm15939-201ENSMUST00000160756 2147 ntTSL 5 BASIC15.55■□□□□ 0.08
Lima1Q9ERG0 Slc4a1ap-206ENSMUST00000201858 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
Lima1Q9ERG0 Sec24a-203ENSMUST00000109092 2094 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
Lima1Q9ERG0 Csnk1g1-212ENSMUST00000206048 2073 ntAPPRIS ALT2 TSL 5 BASIC15.55■□□□□ 0.08
Lima1Q9ERG0 Ror1-201ENSMUST00000039630 5762 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Lima1Q9ERG0 Apoa4-201ENSMUST00000034585 1815 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Lima1Q9ERG0 Gtf2h4-201ENSMUST00000001565 1679 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Lima1Q9ERG0 Commd7-202ENSMUST00000109782 1343 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
Lima1Q9ERG0 Gm16731-201ENSMUST00000132432 922 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
Retrieved 100 of 76,532 protein–RNA pairs in 19.3 ms