Protein–RNA interactions for Protein: Q9ER60

Scn4a, Sodium channel protein type 4 subunit alpha, mousemouse

Predictions only

Length 1,841 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn4aQ9ER60 Hmga1b-201ENSMUST00000105046 1626 ntAPPRIS P1 BASIC21.33■■□□□ 1
Scn4aQ9ER60 Atn1-201ENSMUST00000088357 4433 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
Scn4aQ9ER60 C330018A13Rik-201ENSMUST00000127792 1599 ntTSL 1 (best) BASIC21.33■■□□□ 1
Scn4aQ9ER60 Gm13589-201ENSMUST00000146404 1675 ntTSL 1 (best) BASIC21.32■■□□□ 1
Scn4aQ9ER60 Rmnd5a-201ENSMUST00000002292 6165 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Scn4aQ9ER60 Mrps17-202ENSMUST00000118420 843 ntAPPRIS P1 TSL 2 BASIC21.32■■□□□ 1
Scn4aQ9ER60 Gng7-205ENSMUST00000118465 875 ntAPPRIS ALT1 TSL 1 (best) BASIC21.32■■□□□ 1
Scn4aQ9ER60 Gm13185-201ENSMUST00000131044 944 ntTSL 3 BASIC21.32■■□□□ 1
Scn4aQ9ER60 1700042O10Rik-201ENSMUST00000151032 1075 ntTSL 1 (best) BASIC21.32■■□□□ 1
Scn4aQ9ER60 Gm12446-202ENSMUST00000152069 713 ntTSL 2 BASIC21.32■■□□□ 1
Scn4aQ9ER60 Gm8597-201ENSMUST00000191525 1109 ntBASIC21.32■■□□□ 1
Scn4aQ9ER60 Blvra-201ENSMUST00000002064 1160 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Scn4aQ9ER60 Coq7-205ENSMUST00000209146 799 ntTSL 3 BASIC21.32■■□□□ 1
Scn4aQ9ER60 1700022A21Rik-202ENSMUST00000182910 1448 ntTSL 1 (best) BASIC21.32■■□□□ 1
Scn4aQ9ER60 Klf16-201ENSMUST00000038558 2674 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Scn4aQ9ER60 Zfp862-ps-203ENSMUST00000203848 1776 ntTSL 1 (best) BASIC21.32■■□□□ 1
Scn4aQ9ER60 Gm11661-201ENSMUST00000121761 1327 ntBASIC21.32■■□□□ 1
Scn4aQ9ER60 Rps13-203ENSMUST00000205490 1317 ntTSL 1 (best) BASIC21.32■■□□□ 1
Scn4aQ9ER60 Ntng2-204ENSMUST00000102873 1593 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
Scn4aQ9ER60 Nsg1-201ENSMUST00000031009 2581 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Scn4aQ9ER60 Rpsa-ps9-201ENSMUST00000120702 885 ntBASIC21.32■■□□□ 1
Scn4aQ9ER60 Gm17077-201ENSMUST00000133179 279 ntTSL 5 BASIC21.32■■□□□ 1
Scn4aQ9ER60 Ppm1h-208ENSMUST00000162969 811 ntTSL 3 BASIC21.32■■□□□ 1
Scn4aQ9ER60 Mdk-201ENSMUST00000028672 1054 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Scn4aQ9ER60 Ins1-201ENSMUST00000039652 1016 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Scn4aQ9ER60 Ufsp1-201ENSMUST00000052825 1037 ntAPPRIS P1 BASIC21.32■■□□□ 1
Scn4aQ9ER60 Zc3hc1-210ENSMUST00000152391 1673 ntTSL 5 BASIC21.31■■□□□ 1
Scn4aQ9ER60 Mgat1-213ENSMUST00000167400 3151 ntAPPRIS P1 TSL 5 BASIC21.31■■□□□ 1
Scn4aQ9ER60 Gm29154-231ENSMUST00000215120 1367 ntTSL 5 BASIC21.31■■□□□ 1
Scn4aQ9ER60 Ctnnbip1-201ENSMUST00000030839 2674 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Scn4aQ9ER60 Hbs1l-202ENSMUST00000061324 1998 ntTSL 3 BASIC21.31■■□□□ 1
Scn4aQ9ER60 Xrcc1-201ENSMUST00000063249 2155 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Scn4aQ9ER60 Gm11574-201ENSMUST00000139752 946 ntTSL 5 BASIC21.31■■□□□ 1
Scn4aQ9ER60 Gp9-201ENSMUST00000032133 881 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Scn4aQ9ER60 Olfr569-201ENSMUST00000078191 945 ntAPPRIS P1 BASIC21.31■■□□□ 1
Scn4aQ9ER60 Rnf151-201ENSMUST00000008626 1189 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Scn4aQ9ER60 Odf3l2-201ENSMUST00000095464 1248 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Scn4aQ9ER60 Olfr582-201ENSMUST00000098212 960 ntBASIC21.31■■□□□ 1
Scn4aQ9ER60 Mfsd14a-201ENSMUST00000029570 2782 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Scn4aQ9ER60 Gm37194-201ENSMUST00000193092 3031 ntBASIC21.31■■□□□ 1
Scn4aQ9ER60 Nkiras2-201ENSMUST00000017981 2097 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Scn4aQ9ER60 Ipp-202ENSMUST00000106479 2118 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Scn4aQ9ER60 Ing1-202ENSMUST00000209565 1971 ntTSL 1 (best) BASIC21.3■■□□□ 1
Scn4aQ9ER60 Gm20482-201ENSMUST00000172746 1644 ntTSL 1 (best) BASIC21.3■■□□□ 1
Scn4aQ9ER60 Lat2-201ENSMUST00000036362 1637 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Scn4aQ9ER60 Snora78-201ENSMUST00000158630 128 ntBASIC21.3■■□□□ 1
Scn4aQ9ER60 Gm26618-201ENSMUST00000181123 497 ntTSL 2 BASIC21.3■■□□□ 1
Scn4aQ9ER60 Gm28511-201ENSMUST00000191594 450 ntTSL 3 BASIC21.3■■□□□ 1
Scn4aQ9ER60 Gm43179-201ENSMUST00000198797 275 ntBASIC21.3■■□□□ 1
Scn4aQ9ER60 Abhd18-205ENSMUST00000203472 588 ntTSL 1 (best) BASIC21.3■■□□□ 1
Scn4aQ9ER60 Haglr-201ENSMUST00000100000 2085 ntBASIC21.3■■□□□ 1
Scn4aQ9ER60 1700003E16Rik-202ENSMUST00000203203 2070 ntTSL 2 BASIC21.3■■□□□ 1
Scn4aQ9ER60 Ntng1-203ENSMUST00000106570 1386 ntTSL 5 BASIC21.3■■□□□ 1
Scn4aQ9ER60 9230020A06Rik-203ENSMUST00000214621 1682 ntTSL 5 BASIC21.3■■□□□ 1
Scn4aQ9ER60 Gm42466-201ENSMUST00000202099 1301 ntBASIC21.3■■□□□ 1
Scn4aQ9ER60 Serinc2-203ENSMUST00000122374 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
Scn4aQ9ER60 Dixdc1-202ENSMUST00000117093 1613 ntTSL 1 (best) BASIC21.3■■□□□ 1
Scn4aQ9ER60 Zfyve19-201ENSMUST00000090174 2008 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Scn4aQ9ER60 Tssc4-202ENSMUST00000105920 895 ntTSL 1 (best) BASIC21.29■■□□□ 1
Scn4aQ9ER60 Gm9002-201ENSMUST00000178437 499 ntBASIC21.29■■□□□ 1
Scn4aQ9ER60 Zfp936-202ENSMUST00000200973 578 ntTSL 3 BASIC21.29■■□□□ 1
Scn4aQ9ER60 Gm42196-201ENSMUST00000209618 730 ntTSL 5 BASIC21.29■■□□□ 1
Scn4aQ9ER60 CT009713.10-202ENSMUST00000225734 696 ntBASIC21.29■■□□□ 1
Scn4aQ9ER60 Tppp3-203ENSMUST00000177126 1396 ntAPPRIS P1 TSL 3 BASIC21.29■■□□□ 1
Scn4aQ9ER60 Rgs6-204ENSMUST00000185674 1362 ntTSL 5 BASIC21.29■■□□□ 1
Scn4aQ9ER60 Ints10-203ENSMUST00000110241 2322 ntTSL 1 (best) BASIC21.29■■□□□ 1
Scn4aQ9ER60 Ldlrad4-201ENSMUST00000063775 2493 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Scn4aQ9ER60 Mfsd13a-201ENSMUST00000086969 2278 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Scn4aQ9ER60 Mzf1-202ENSMUST00000182087 2197 ntTSL 1 (best) BASIC21.29■■□□□ 1
Scn4aQ9ER60 Slc9a3r2-202ENSMUST00000019684 1688 ntTSL 1 (best) BASIC21.29■■□□□ 1
Scn4aQ9ER60 Dnajc22-201ENSMUST00000061295 1564 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Scn4aQ9ER60 Gm8835-201ENSMUST00000173096 1169 ntBASIC21.29■■□□□ 1
Scn4aQ9ER60 5730507C01Rik-201ENSMUST00000063216 2431 ntAPPRIS P3 TSL 1 (best) BASIC21.29■■□□□ 1
Scn4aQ9ER60 Cnksr1-201ENSMUST00000030645 2468 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Scn4aQ9ER60 Tmem136-202ENSMUST00000213544 2463 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Scn4aQ9ER60 Gm12329-201ENSMUST00000120829 1007 ntBASIC21.28■■□□□ 1
Scn4aQ9ER60 Gm15317-201ENSMUST00000129569 699 ntTSL 3 BASIC21.28■■□□□ 1
Scn4aQ9ER60 Flg-208ENSMUST00000180308 1076 ntTSL 1 (best) BASIC21.28■■□□□ 1
Scn4aQ9ER60 Gm27892-201ENSMUST00000185017 106 ntBASIC21.28■■□□□ 1
Scn4aQ9ER60 Gm10766-202ENSMUST00000194123 606 ntBASIC21.28■■□□□ 1
Scn4aQ9ER60 AC158529.1-201ENSMUST00000223618 239 ntBASIC21.28■■□□□ 1
Scn4aQ9ER60 Rps21-201ENSMUST00000059080 394 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Scn4aQ9ER60 Ftl1-201ENSMUST00000094434 968 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Scn4aQ9ER60 Oser1-202ENSMUST00000104954 1702 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Scn4aQ9ER60 Vps4a-201ENSMUST00000034388 2178 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Scn4aQ9ER60 Fbxo15-204ENSMUST00000224467 1908 ntAPPRIS ALT2 BASIC21.28■■□□□ 1
Scn4aQ9ER60 Stap2-201ENSMUST00000043785 1491 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Scn4aQ9ER60 Smim15-205ENSMUST00000225972 2097 ntAPPRIS P1 BASIC21.28■■□□□ 1
Scn4aQ9ER60 Gm37519-201ENSMUST00000191687 2210 ntBASIC21.27■■□□□ 1
Scn4aQ9ER60 Mettl7a3-201ENSMUST00000075420 1618 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Scn4aQ9ER60 Il17re-201ENSMUST00000053569 1898 ntTSL 1 (best) BASIC21.27■■□□□ 1
Scn4aQ9ER60 Spag7-201ENSMUST00000018431 1159 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Scn4aQ9ER60 Lysmd4-209ENSMUST00000208998 2110 ntAPPRIS P2 TSL 1 (best) BASIC21.27■■□□□ 1
Scn4aQ9ER60 Ndufa4l2-201ENSMUST00000035735 934 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Scn4aQ9ER60 9430041J12Rik-201ENSMUST00000050989 534 ntBASIC21.27■■□□□ 1
Scn4aQ9ER60 Eapp-201ENSMUST00000067272 590 ntTSL 3 BASIC21.27■■□□□ 1
Scn4aQ9ER60 Nudt19-201ENSMUST00000040962 2298 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Scn4aQ9ER60 Agk-201ENSMUST00000031977 2531 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Scn4aQ9ER60 Fam222a-201ENSMUST00000043650 2930 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Scn4aQ9ER60 Gas2l3-207ENSMUST00000220128 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
Retrieved 100 of 76,532 protein–RNA pairs in 31.5 ms