Protein–RNA interactions for Protein: Q9EQM3

Nkx2-4, Homeobox protein Nkx-2.4, mousemouse

Predictions only

Length 354 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx2-4Q9EQM3 Usp6nl-202ENSMUST00000114937 7484 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
Nkx2-4Q9EQM3 Lhfp-201ENSMUST00000059562 2108 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Nkx2-4Q9EQM3 Tmod1-201ENSMUST00000107773 3158 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
Nkx2-4Q9EQM3 Abi1-215ENSMUST00000178908 2239 ntAPPRIS ALT1 TSL 5 BASIC16.1■□□□□ 0.17
Nkx2-4Q9EQM3 Rabl2-201ENSMUST00000023294 1640 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Nkx2-4Q9EQM3 Krtap1-3-201ENSMUST00000104930 879 ntAPPRIS P1 BASIC16.1■□□□□ 0.17
Nkx2-4Q9EQM3 Olfr55-201ENSMUST00000112168 948 ntAPPRIS P1 BASIC16.1■□□□□ 0.17
Nkx2-4Q9EQM3 Alkbh2-202ENSMUST00000112279 899 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Nkx2-4Q9EQM3 Gm12008-201ENSMUST00000117791 755 ntBASIC16.1■□□□□ 0.17
Nkx2-4Q9EQM3 Ndufa5-202ENSMUST00000118558 315 ntTSL 2 BASIC16.1■□□□□ 0.17
Nkx2-4Q9EQM3 Gm11773-201ENSMUST00000138256 497 ntTSL 2 BASIC16.1■□□□□ 0.17
Nkx2-4Q9EQM3 Lgals3-204ENSMUST00000150290 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Nkx2-4Q9EQM3 Gm15458-201ENSMUST00000156950 709 ntTSL 5 BASIC16.1■□□□□ 0.17
Nkx2-4Q9EQM3 AC131710.1-201ENSMUST00000228336 990 ntBASIC16.1■□□□□ 0.17
Nkx2-4Q9EQM3 Gzma-201ENSMUST00000023897 878 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.17
Nkx2-4Q9EQM3 Trappc4-201ENSMUST00000034623 1220 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Nkx2-4Q9EQM3 Apobec2-201ENSMUST00000046549 1218 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Nkx2-4Q9EQM3 Asnsd1-201ENSMUST00000027264 2442 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Nkx2-4Q9EQM3 Ankrd29-201ENSMUST00000118525 3242 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Nkx2-4Q9EQM3 Ank1-209ENSMUST00000121802 8218 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
Nkx2-4Q9EQM3 Coro1a-202ENSMUST00000106364 1747 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Nkx2-4Q9EQM3 Tpm2-201ENSMUST00000030184 2175 ntTSL 5 BASIC16.1■□□□□ 0.17
Nkx2-4Q9EQM3 Gnaz-201ENSMUST00000037813 3519 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Nkx2-4Q9EQM3 Inhbc-201ENSMUST00000026472 1859 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Nkx2-4Q9EQM3 Gm16976-201ENSMUST00000099718 1894 ntTSL 5 BASIC16.1■□□□□ 0.17
Nkx2-4Q9EQM3 Gm16835-201ENSMUST00000140488 2809 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
Nkx2-4Q9EQM3 Mdm1-204ENSMUST00000169817 2022 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
Nkx2-4Q9EQM3 Acadvl-201ENSMUST00000018718 2020 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
Nkx2-4Q9EQM3 Large1-204ENSMUST00000212459 4746 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Nkx2-4Q9EQM3 Dach1-202ENSMUST00000071533 5219 ntAPPRIS P4 TSL 1 (best) BASIC16.09■□□□□ 0.17
Nkx2-4Q9EQM3 Mon2-202ENSMUST00000073792 9301 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
Nkx2-4Q9EQM3 Slc48a1-201ENSMUST00000117892 2536 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Nkx2-4Q9EQM3 Ppp2r5e-201ENSMUST00000021447 4810 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Nkx2-4Q9EQM3 Atp6v0d1-201ENSMUST00000013304 1629 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Nkx2-4Q9EQM3 Sirt6-202ENSMUST00000119324 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
Nkx2-4Q9EQM3 Hmgn1-201ENSMUST00000050884 2174 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Nkx2-4Q9EQM3 Zfp512b-201ENSMUST00000108789 5714 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Nkx2-4Q9EQM3 Bad-203ENSMUST00000113426 740 ntTSL 5 BASIC16.09■□□□□ 0.17
Nkx2-4Q9EQM3 Crybb3-202ENSMUST00000117143 749 ntAPPRIS P1 TSL 3 BASIC16.09■□□□□ 0.17
Nkx2-4Q9EQM3 Gm6257-201ENSMUST00000163864 910 ntBASIC16.09■□□□□ 0.17
Nkx2-4Q9EQM3 CT025555.1-201ENSMUST00000225901 1217 ntBASIC16.09■□□□□ 0.17
Nkx2-4Q9EQM3 Pold4-201ENSMUST00000025773 910 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Nkx2-4Q9EQM3 Lce1d-201ENSMUST00000029524 678 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Nkx2-4Q9EQM3 Csnk1a1-206ENSMUST00000165721 2323 ntAPPRIS ALT1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Nkx2-4Q9EQM3 Psmc5-201ENSMUST00000021049 1316 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Nkx2-4Q9EQM3 Stk39-201ENSMUST00000102715 3536 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Nkx2-4Q9EQM3 Man1c1-202ENSMUST00000054096 4715 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
Nkx2-4Q9EQM3 Rbm24-201ENSMUST00000037923 3086 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.17
Nkx2-4Q9EQM3 Jade1-202ENSMUST00000163764 5584 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
Nkx2-4Q9EQM3 Neo1-201ENSMUST00000068664 7379 ntAPPRIS P2 TSL 1 (best) BASIC16.09■□□□□ 0.17
Nkx2-4Q9EQM3 Klhl42-201ENSMUST00000036003 6267 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Nkx2-4Q9EQM3 Pqlc2-201ENSMUST00000053862 1532 ntAPPRIS P2 TSL 1 (best) BASIC16.09■□□□□ 0.17
Nkx2-4Q9EQM3 Slc35g1-201ENSMUST00000054098 3471 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Nkx2-4Q9EQM3 Trmt2a-202ENSMUST00000100099 2235 ntAPPRIS P5 TSL 1 (best) BASIC16.09■□□□□ 0.17
Nkx2-4Q9EQM3 Plekhf2-201ENSMUST00000054776 2977 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
Nkx2-4Q9EQM3 Xxylt1-201ENSMUST00000055389 2987 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
Nkx2-4Q9EQM3 Psrc1-201ENSMUST00000090561 1686 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
Nkx2-4Q9EQM3 AC131104.1-201ENSMUST00000222118 1739 ntTSL 5 BASIC16.08■□□□□ 0.17
Nkx2-4Q9EQM3 Pkn1-201ENSMUST00000005616 6662 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.17
Nkx2-4Q9EQM3 Zswim8-201ENSMUST00000022358 6073 ntAPPRIS P2 TSL 1 (best) BASIC16.08■□□□□ 0.17
Nkx2-4Q9EQM3 Kctd9-205ENSMUST00000152243 2528 ntTSL 2 BASIC16.08■□□□□ 0.17
Nkx2-4Q9EQM3 Nfe2-208ENSMUST00000149111 1878 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
Nkx2-4Q9EQM3 Rbl2-201ENSMUST00000034091 4925 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.16
Nkx2-4Q9EQM3 Neurl1a-202ENSMUST00000111808 4157 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.16
Nkx2-4Q9EQM3 Dnm1-216ENSMUST00000201494 2732 ntTSL 5 BASIC16.08■□□□□ 0.16
Nkx2-4Q9EQM3 Gm9821-201ENSMUST00000178895 1953 ntAPPRIS P1 BASIC16.08■□□□□ 0.16
Nkx2-4Q9EQM3 Mink1-202ENSMUST00000072873 4610 ntAPPRIS ALT2 TSL 5 BASIC16.08■□□□□ 0.16
Nkx2-4Q9EQM3 Gm25287-201ENSMUST00000103846 110 ntBASIC16.08■□□□□ 0.16
Nkx2-4Q9EQM3 Gm22918-201ENSMUST00000103855 110 ntBASIC16.08■□□□□ 0.16
Nkx2-4Q9EQM3 AC155937.1-201ENSMUST00000125635 831 ntAPPRIS P1 TSL 3 BASIC16.08■□□□□ 0.16
Nkx2-4Q9EQM3 Crem-221ENSMUST00000142690 1256 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
Nkx2-4Q9EQM3 Tm7sf2-209ENSMUST00000161528 732 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
Nkx2-4Q9EQM3 BC023719-201ENSMUST00000174728 978 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
Nkx2-4Q9EQM3 Gm27164-201ENSMUST00000184359 723 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
Nkx2-4Q9EQM3 Gm17837-201ENSMUST00000186435 985 ntBASIC16.08■□□□□ 0.16
Nkx2-4Q9EQM3 Myoz3-201ENSMUST00000056533 870 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Nkx2-4Q9EQM3 Rabepk-203ENSMUST00000118108 1431 ntAPPRIS P1 TSL 5 BASIC16.08■□□□□ 0.16
Nkx2-4Q9EQM3 Lmtk2-201ENSMUST00000041804 8114 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Nkx2-4Q9EQM3 St7l-202ENSMUST00000106769 2428 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
Nkx2-4Q9EQM3 Csnk1g3-201ENSMUST00000069597 4394 ntAPPRIS P1 TSL 5 BASIC16.08■□□□□ 0.16
Nkx2-4Q9EQM3 Pick1-206ENSMUST00000166155 1699 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Nkx2-4Q9EQM3 Ddx39b-203ENSMUST00000173731 2848 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Nkx2-4Q9EQM3 Acat2-203ENSMUST00000159697 1800 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
Nkx2-4Q9EQM3 Matk-203ENSMUST00000119547 1916 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
Nkx2-4Q9EQM3 Slc46a1-201ENSMUST00000001126 1978 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Nkx2-4Q9EQM3 Zyx-205ENSMUST00000203401 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
Nkx2-4Q9EQM3 Coq8b-201ENSMUST00000003860 2181 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Nkx2-4Q9EQM3 P4ha2-201ENSMUST00000019050 2230 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
Nkx2-4Q9EQM3 Dcdc2c-206ENSMUST00000221349 2209 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
Nkx2-4Q9EQM3 Aptx-203ENSMUST00000108103 2391 ntAPPRIS ALT2 TSL 5 BASIC16.07■□□□□ 0.16
Nkx2-4Q9EQM3 Fam46c-201ENSMUST00000061455 5640 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Nkx2-4Q9EQM3 Bean1-201ENSMUST00000093245 3199 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
Nkx2-4Q9EQM3 Cryba4-202ENSMUST00000112383 754 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Nkx2-4Q9EQM3 Mvk-206ENSMUST00000137167 1049 ntTSL 2 BASIC16.07■□□□□ 0.16
Nkx2-4Q9EQM3 Gm27618-201ENSMUST00000183671 60 ntBASIC16.07■□□□□ 0.16
Nkx2-4Q9EQM3 Vsig2-204ENSMUST00000215271 891 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Nkx2-4Q9EQM3 Tpi-rs5-201ENSMUST00000216947 774 ntBASIC16.07■□□□□ 0.16
Nkx2-4Q9EQM3 Wdyhv1-203ENSMUST00000226889 394 ntBASIC16.07■□□□□ 0.16
Nkx2-4Q9EQM3 Cd151-201ENSMUST00000058746 1619 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Nkx2-4Q9EQM3 Fam217a-204ENSMUST00000225242 1811 ntAPPRIS ALT2 BASIC16.07■□□□□ 0.16
Retrieved 100 of 76,532 protein–RNA pairs in 28.6 ms