Protein–RNA interactions for Protein: Q9D1C8

Vps28, Vacuolar protein sorting-associated protein 28 homolog, mousemouse

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps28Q9D1C8 Apeh-206ENSMUST00000193254 2518 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Vps28Q9D1C8 Npffr1-201ENSMUST00000020287 3479 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
Vps28Q9D1C8 Snupn-201ENSMUST00000068856 1391 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Vps28Q9D1C8 Amn1-201ENSMUST00000095319 1369 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
Vps28Q9D1C8 Pskh1-201ENSMUST00000049699 3255 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Vps28Q9D1C8 Nipal3-201ENSMUST00000102549 5153 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
Vps28Q9D1C8 Rgma-204ENSMUST00000139780 3371 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
Vps28Q9D1C8 Slc29a4-201ENSMUST00000058418 2789 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Vps28Q9D1C8 Fars2-201ENSMUST00000021857 2125 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Vps28Q9D1C8 Mccc1-201ENSMUST00000029259 2455 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Vps28Q9D1C8 Mettl7a2-202ENSMUST00000176287 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
Vps28Q9D1C8 Mettl7a2-201ENSMUST00000088142 1800 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.17
Vps28Q9D1C8 Efnb3-201ENSMUST00000004036 3183 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Vps28Q9D1C8 Rgl3-201ENSMUST00000045726 2543 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Vps28Q9D1C8 Pds5b-208ENSMUST00000202170 6598 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
Vps28Q9D1C8 Dmpk-202ENSMUST00000108473 2588 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
Vps28Q9D1C8 Fam83f-201ENSMUST00000023044 2988 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Vps28Q9D1C8 Mbd6-201ENSMUST00000026476 4165 ntAPPRIS P3 TSL 5 BASIC16.1■□□□□ 0.17
Vps28Q9D1C8 Gm4609-201ENSMUST00000106443 1002 ntBASIC16.1■□□□□ 0.17
Vps28Q9D1C8 Ndufb6-202ENSMUST00000108108 480 ntTSL 3 BASIC16.1■□□□□ 0.17
Vps28Q9D1C8 Gm5138-201ENSMUST00000113842 1002 ntBASIC16.1■□□□□ 0.17
Vps28Q9D1C8 Gm15191-201ENSMUST00000117933 1000 ntBASIC16.1■□□□□ 0.17
Vps28Q9D1C8 Gm12182-201ENSMUST00000118655 1008 ntBASIC16.1■□□□□ 0.17
Vps28Q9D1C8 Gm13882-201ENSMUST00000120886 1002 ntBASIC16.1■□□□□ 0.17
Vps28Q9D1C8 Gm10284-201ENSMUST00000145057 1005 ntBASIC16.1■□□□□ 0.17
Vps28Q9D1C8 Tnnt2-205ENSMUST00000178204 1172 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
Vps28Q9D1C8 Gm10481-201ENSMUST00000179228 1002 ntBASIC16.1■□□□□ 0.17
Vps28Q9D1C8 Gm3336-201ENSMUST00000179347 1149 ntAPPRIS P2 TSL 5 BASIC16.1■□□□□ 0.17
Vps28Q9D1C8 Tnnt2-207ENSMUST00000179863 1097 ntAPPRIS P4 TSL 5 BASIC16.1■□□□□ 0.17
Vps28Q9D1C8 Gapdh-ps15-201ENSMUST00000180966 1002 ntBASIC16.1■□□□□ 0.17
Vps28Q9D1C8 Gm2574-201ENSMUST00000181051 1002 ntBASIC16.1■□□□□ 0.17
Vps28Q9D1C8 Gm3200-201ENSMUST00000181493 1002 ntBASIC16.1■□□□□ 0.17
Vps28Q9D1C8 Gm8825-201ENSMUST00000182565 998 ntBASIC16.1■□□□□ 0.17
Vps28Q9D1C8 Gm4518-201ENSMUST00000182638 718 ntBASIC16.1■□□□□ 0.17
Vps28Q9D1C8 Gm8330-201ENSMUST00000182754 1008 ntBASIC16.1■□□□□ 0.17
Vps28Q9D1C8 Gm4575-201ENSMUST00000182991 1002 ntBASIC16.1■□□□□ 0.17
Vps28Q9D1C8 Gm8709-201ENSMUST00000183230 1012 ntBASIC16.1■□□□□ 0.17
Vps28Q9D1C8 Tnnt2-209ENSMUST00000188028 1200 ntAPPRIS P4 TSL 5 BASIC16.1■□□□□ 0.17
Vps28Q9D1C8 Pmf1-205ENSMUST00000193338 795 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Vps28Q9D1C8 Samd13-205ENSMUST00000197989 591 ntTSL 5 BASIC16.1■□□□□ 0.17
Vps28Q9D1C8 Gm3336-202ENSMUST00000213065 842 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
Vps28Q9D1C8 Apopt1-201ENSMUST00000040519 1065 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
Vps28Q9D1C8 Acyp2-201ENSMUST00000074613 863 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Vps28Q9D1C8 Gm10293-201ENSMUST00000076317 1002 ntBASIC16.1■□□□□ 0.17
Vps28Q9D1C8 Gm6316-201ENSMUST00000082064 1020 ntBASIC16.1■□□□□ 0.17
Vps28Q9D1C8 Prkab1-202ENSMUST00000111999 2026 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
Vps28Q9D1C8 Cd2bp2-201ENSMUST00000035771 1309 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Vps28Q9D1C8 Hist1h2ac-201ENSMUST00000171127 2482 ntAPPRIS P1 BASIC16.1■□□□□ 0.17
Vps28Q9D1C8 Bpifb3-202ENSMUST00000109760 1741 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
Vps28Q9D1C8 AC153526.5-201ENSMUST00000218661 2147 ntBASIC16.1■□□□□ 0.17
Vps28Q9D1C8 Gm5837-201ENSMUST00000191844 1369 ntBASIC16.1■□□□□ 0.17
Vps28Q9D1C8 G3bp2-202ENSMUST00000164378 3026 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
Vps28Q9D1C8 Smox-204ENSMUST00000110181 2299 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Vps28Q9D1C8 Rbck1-201ENSMUST00000028964 2252 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Vps28Q9D1C8 Rint1-205ENSMUST00000120869 1886 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Vps28Q9D1C8 Rhbg-201ENSMUST00000171887 1937 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Vps28Q9D1C8 Nkx1-2-201ENSMUST00000054562 3264 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Vps28Q9D1C8 Vangl2-202ENSMUST00000111263 6528 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
Vps28Q9D1C8 Gm19684-201ENSMUST00000173128 1611 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Vps28Q9D1C8 Sacs-204ENSMUST00000121091 4581 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
Vps28Q9D1C8 Dlx1-201ENSMUST00000037119 4111 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Vps28Q9D1C8 Tcp11-202ENSMUST00000043925 1746 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
Vps28Q9D1C8 Dera-201ENSMUST00000087675 1729 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Vps28Q9D1C8 Prpf3-207ENSMUST00000161476 2732 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Vps28Q9D1C8 Sf1-203ENSMUST00000113488 2282 ntTSL 5 BASIC16.09■□□□□ 0.17
Vps28Q9D1C8 Gm7862-201ENSMUST00000121461 292 ntBASIC16.09■□□□□ 0.17
Vps28Q9D1C8 Gm15246-201ENSMUST00000149873 540 ntTSL 3 BASIC16.09■□□□□ 0.17
Vps28Q9D1C8 Zfp524-203ENSMUST00000209030 1128 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
Vps28Q9D1C8 Timm10b-211ENSMUST00000210350 529 ntAPPRIS ALT2 TSL 2 BASIC16.09■□□□□ 0.17
Vps28Q9D1C8 Hacd1-201ENSMUST00000074854 926 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
Vps28Q9D1C8 Nat8f3-202ENSMUST00000168531 1347 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Vps28Q9D1C8 Cstf2-201ENSMUST00000033609 4502 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Vps28Q9D1C8 Tnip2-202ENSMUST00000087737 1987 ntAPPRIS P2 TSL 1 (best) BASIC16.09■□□□□ 0.17
Vps28Q9D1C8 Nes-203ENSMUST00000160694 5958 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
Vps28Q9D1C8 Pcsk6-201ENSMUST00000055576 4405 ntAPPRIS P3 TSL 5 BASIC16.09■□□□□ 0.17
Vps28Q9D1C8 Stxbp6-201ENSMUST00000053768 4553 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
Vps28Q9D1C8 Ube2w-201ENSMUST00000117146 2181 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Vps28Q9D1C8 Fam155a-206ENSMUST00000208933 1569 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
Vps28Q9D1C8 Ppp1r11-201ENSMUST00000040402 1599 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Vps28Q9D1C8 Galnt17-202ENSMUST00000160609 2875 ntTSL 5 BASIC16.09■□□□□ 0.17
Vps28Q9D1C8 Hmga1b-201ENSMUST00000105046 1626 ntAPPRIS P1 BASIC16.08■□□□□ 0.17
Vps28Q9D1C8 Rock1-201ENSMUST00000067947 6187 ntAPPRIS P1 TSL 5 BASIC16.08■□□□□ 0.17
Vps28Q9D1C8 Kctd20-208ENSMUST00000168507 2400 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
Vps28Q9D1C8 Prpf40b-212ENSMUST00000145482 3308 ntAPPRIS P2 TSL 1 (best) BASIC16.08■□□□□ 0.17
Vps28Q9D1C8 Ranbp9-201ENSMUST00000144326 3371 ntAPPRIS P2 TSL 5 BASIC16.08■□□□□ 0.17
Vps28Q9D1C8 Wdr91-201ENSMUST00000081214 2682 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Vps28Q9D1C8 Galnt13-203ENSMUST00000112635 7531 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Vps28Q9D1C8 T-201ENSMUST00000074667 2046 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Vps28Q9D1C8 Papd5-202ENSMUST00000118952 4597 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Vps28Q9D1C8 B9d2-201ENSMUST00000108403 1021 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Vps28Q9D1C8 Gm13418-201ENSMUST00000119097 944 ntBASIC16.08■□□□□ 0.16
Vps28Q9D1C8 Gm11767-201ENSMUST00000129379 493 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
Vps28Q9D1C8 6430573P05Rik-202ENSMUST00000192648 597 ntTSL 3 BASIC16.08■□□□□ 0.16
Vps28Q9D1C8 Gm37584-201ENSMUST00000193595 1290 ntBASIC16.08■□□□□ 0.16
Vps28Q9D1C8 Lat-206ENSMUST00000206793 1215 ntAPPRIS ALT2 TSL 5 BASIC16.08■□□□□ 0.16
Vps28Q9D1C8 Zfp930-203ENSMUST00000212312 493 ntTSL 2 BASIC16.08■□□□□ 0.16
Vps28Q9D1C8 Chmp2a-201ENSMUST00000005711 949 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Vps28Q9D1C8 Ehmt2-204ENSMUST00000114033 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
Vps28Q9D1C8 Il6st-206ENSMUST00000183886 3004 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
Vps28Q9D1C8 Sucla2-203ENSMUST00000160507 2229 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Retrieved 100 of 76,532 protein–RNA pairs in 16 ms