Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Actn3-201ENSMUST00000006626 2880 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Smc1aQ9CU62 Nrg1-218ENSMUST00000209107 2972 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
Smc1aQ9CU62 Smyd4-201ENSMUST00000044530 3517 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Smc1aQ9CU62 Pih1d1-202ENSMUST00000107811 1072 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Smc1aQ9CU62 Gm11452-201ENSMUST00000122376 690 ntBASIC17.6■□□□□ 0.41
Smc1aQ9CU62 Apopt1-204ENSMUST00000163220 671 ntAPPRIS ALT2 TSL 2 BASIC17.6■□□□□ 0.41
Smc1aQ9CU62 H2-T-ps-201ENSMUST00000172538 1067 ntBASIC17.6■□□□□ 0.41
Smc1aQ9CU62 Gm28402-201ENSMUST00000188574 373 ntTSL 3 BASIC17.6■□□□□ 0.41
Smc1aQ9CU62 AC159301.1-201ENSMUST00000225130 1182 ntBASIC17.6■□□□□ 0.41
Smc1aQ9CU62 Ube2f-204ENSMUST00000178627 1363 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Smc1aQ9CU62 Map3k6-201ENSMUST00000030677 4334 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Smc1aQ9CU62 Crhbp-201ENSMUST00000045583 1701 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Smc1aQ9CU62 Cdc27-202ENSMUST00000106961 1863 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Smc1aQ9CU62 Cux1-212ENSMUST00000176778 5520 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
Smc1aQ9CU62 Parp6-201ENSMUST00000026267 2709 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
Smc1aQ9CU62 Anks1b-202ENSMUST00000099366 2549 ntTSL 5 BASIC17.59■□□□□ 0.41
Smc1aQ9CU62 Adgrb2-205ENSMUST00000106017 5104 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
Smc1aQ9CU62 Fhl3-201ENSMUST00000038684 1664 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Smc1aQ9CU62 C130026I21Rik-201ENSMUST00000064341 1561 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
Smc1aQ9CU62 Lhx1os-201ENSMUST00000126072 589 ntTSL 3 BASIC17.59■□□□□ 0.41
Smc1aQ9CU62 Gm13054-201ENSMUST00000154192 820 ntTSL 3 BASIC17.59■□□□□ 0.41
Smc1aQ9CU62 Gm18733-201ENSMUST00000173950 856 ntBASIC17.59■□□□□ 0.41
Smc1aQ9CU62 Cyhr1-204ENSMUST00000177359 1110 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Smc1aQ9CU62 A830052D11Rik-201ENSMUST00000181729 1130 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Smc1aQ9CU62 Ino80dos-204ENSMUST00000188602 678 ntTSL 2 BASIC17.59■□□□□ 0.41
Smc1aQ9CU62 Gm18195-201ENSMUST00000207604 706 ntBASIC17.59■□□□□ 0.41
Smc1aQ9CU62 Pgpep1-208ENSMUST00000211715 676 ntTSL 3 BASIC17.59■□□□□ 0.41
Smc1aQ9CU62 Dars-202ENSMUST00000064309 645 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Smc1aQ9CU62 Dgcr6-202ENSMUST00000076757 894 ntTSL 5 BASIC17.59■□□□□ 0.41
Smc1aQ9CU62 Ankhd1-214ENSMUST00000155329 8223 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
Smc1aQ9CU62 Stk33-201ENSMUST00000090414 2221 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
Smc1aQ9CU62 Meis2-204ENSMUST00000110906 3229 ntTSL 2 BASIC17.59■□□□□ 0.41
Smc1aQ9CU62 Chrm3-202ENSMUST00000187510 4336 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
Smc1aQ9CU62 Ptprt-202ENSMUST00000109442 7719 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.41
Smc1aQ9CU62 Gm26592-201ENSMUST00000180870 1730 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
Smc1aQ9CU62 Gpam-201ENSMUST00000061856 3832 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
Smc1aQ9CU62 Tgfbr2-202ENSMUST00000061101 8092 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
Smc1aQ9CU62 Dap-201ENSMUST00000044524 1555 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
Smc1aQ9CU62 Rhd-201ENSMUST00000030627 1514 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
Smc1aQ9CU62 Cd302-202ENSMUST00000074606 1354 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
Smc1aQ9CU62 Spopl-203ENSMUST00000132484 6595 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.4
Smc1aQ9CU62 Mansc4-201ENSMUST00000100780 1125 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.4
Smc1aQ9CU62 Oraov1-203ENSMUST00000105895 1016 ntAPPRIS ALT2 TSL 2 BASIC17.58■□□□□ 0.4
Smc1aQ9CU62 Gm128-202ENSMUST00000107197 1289 ntTSL 2 BASIC17.58■□□□□ 0.4
Smc1aQ9CU62 Gm15295-201ENSMUST00000139874 488 ntTSL 5 BASIC17.58■□□□□ 0.4
Smc1aQ9CU62 Prr3-202ENSMUST00000165613 767 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
Smc1aQ9CU62 Gm38186-201ENSMUST00000192574 449 ntTSL 3 BASIC17.58■□□□□ 0.4
Smc1aQ9CU62 Ssr2-205ENSMUST00000193934 569 ntTSL 3 BASIC17.58■□□□□ 0.4
Smc1aQ9CU62 Gm37280-201ENSMUST00000194583 375 ntTSL 3 BASIC17.58■□□□□ 0.4
Smc1aQ9CU62 Ppp1r27-201ENSMUST00000026121 771 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Smc1aQ9CU62 Srrd-201ENSMUST00000031289 1110 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Smc1aQ9CU62 Klhdc4-201ENSMUST00000045884 2078 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Smc1aQ9CU62 Tchh-201ENSMUST00000064257 5823 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.4
Smc1aQ9CU62 Gpr6-201ENSMUST00000061796 1786 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Smc1aQ9CU62 Plk1-201ENSMUST00000033154 2199 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Smc1aQ9CU62 Usp53-201ENSMUST00000090379 6185 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Smc1aQ9CU62 Mastl-201ENSMUST00000028119 5590 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Smc1aQ9CU62 Nipal2-201ENSMUST00000040791 4331 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Smc1aQ9CU62 Nup98-205ENSMUST00000211022 3132 ntTSL 2 BASIC17.57■□□□□ 0.4
Smc1aQ9CU62 Zhx1-201ENSMUST00000070143 4764 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Smc1aQ9CU62 AL590614.2-201ENSMUST00000225374 1937 ntBASIC17.57■□□□□ 0.4
Smc1aQ9CU62 Eml3-202ENSMUST00000224272 2978 ntAPPRIS ALT2 BASIC17.57■□□□□ 0.4
Smc1aQ9CU62 Chmp4c-201ENSMUST00000029049 6188 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Smc1aQ9CU62 Dab2ip-202ENSMUST00000091010 6455 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
Smc1aQ9CU62 Gm7935-201ENSMUST00000100555 1278 ntBASIC17.57■□□□□ 0.4
Smc1aQ9CU62 Speg-202ENSMUST00000113587 1254 ntTSL 5 BASIC17.57■□□□□ 0.4
Smc1aQ9CU62 Tecr-201ENSMUST00000019382 1158 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Smc1aQ9CU62 Prdx6-201ENSMUST00000051925 959 ntTSL 2 BASIC17.57■□□□□ 0.4
Smc1aQ9CU62 Sec61b-201ENSMUST00000065678 564 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Smc1aQ9CU62 Pnkp-203ENSMUST00000107876 1770 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Smc1aQ9CU62 Pdia3-201ENSMUST00000028683 2770 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Smc1aQ9CU62 Col2a1-201ENSMUST00000023123 5104 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Smc1aQ9CU62 Rflna-201ENSMUST00000036109 1681 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
Smc1aQ9CU62 Raxos1-201ENSMUST00000181100 2547 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Smc1aQ9CU62 Pkp2-201ENSMUST00000039408 2918 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Smc1aQ9CU62 Slc1a6-201ENSMUST00000005490 2029 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Smc1aQ9CU62 Tnfaip2-201ENSMUST00000102745 3762 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
Smc1aQ9CU62 Hyls1-201ENSMUST00000115110 1973 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Smc1aQ9CU62 Mesp2-201ENSMUST00000107394 1944 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Smc1aQ9CU62 Ogfrl1-201ENSMUST00000027343 4844 ntAPPRIS P1 TSL 3 BASIC17.56■□□□□ 0.4
Smc1aQ9CU62 Rasgrp2-208ENSMUST00000113476 2296 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
Smc1aQ9CU62 Kat2a-201ENSMUST00000006973 3043 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
Smc1aQ9CU62 Mib1-201ENSMUST00000052838 10231 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Smc1aQ9CU62 Mfge8-201ENSMUST00000032825 2125 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
Smc1aQ9CU62 Tacstd2-201ENSMUST00000058178 1735 ntAPPRIS P1 BASIC17.56■□□□□ 0.4
Smc1aQ9CU62 Fbxo31-201ENSMUST00000059018 4358 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
Smc1aQ9CU62 Slc25a3-206ENSMUST00000170810 1341 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
Smc1aQ9CU62 Pick1-202ENSMUST00000053926 2415 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Smc1aQ9CU62 Trim7-202ENSMUST00000109213 2356 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Smc1aQ9CU62 1700020A23Rik-202ENSMUST00000110281 521 ntAPPRIS P1 TSL 3 BASIC17.56■□□□□ 0.4
Smc1aQ9CU62 Gm15510-201ENSMUST00000123644 1172 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Smc1aQ9CU62 Hnrnpa1l2-ps-201ENSMUST00000129154 964 ntBASIC17.56■□□□□ 0.4
Smc1aQ9CU62 Mkln1os-202ENSMUST00000144232 964 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Smc1aQ9CU62 Upp1-205ENSMUST00000164791 1252 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Smc1aQ9CU62 Tmem255b-201ENSMUST00000167071 1138 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Smc1aQ9CU62 Sbsn-202ENSMUST00000182227 432 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
Smc1aQ9CU62 Sbsn-203ENSMUST00000182229 732 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
Smc1aQ9CU62 Gm29707-201ENSMUST00000196325 491 ntBASIC17.56■□□□□ 0.4
Smc1aQ9CU62 AW822252-206ENSMUST00000208904 237 ntBASIC17.56■□□□□ 0.4
Smc1aQ9CU62 AC108846.1-201ENSMUST00000214531 513 ntBASIC17.56■□□□□ 0.4
Retrieved 100 of 76,532 protein–RNA pairs in 28.7 ms