Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Trmt112-ps2-201ENSMUST00000117987 378 ntBASIC17.62■□□□□ 0.41
Ushbp1Q8R370 Gm11594-201ENSMUST00000122313 162 ntBASIC17.62■□□□□ 0.41
Ushbp1Q8R370 Gm12973-201ENSMUST00000143967 607 ntTSL 5 BASIC17.62■□□□□ 0.41
Ushbp1Q8R370 Rprl3-201ENSMUST00000157400 290 ntBASIC17.62■□□□□ 0.41
Ushbp1Q8R370 Gm7507-201ENSMUST00000183053 1008 ntBASIC17.62■□□□□ 0.41
Ushbp1Q8R370 AV026068-207ENSMUST00000187718 400 ntTSL 5 BASIC17.62■□□□□ 0.41
Ushbp1Q8R370 Pts-206ENSMUST00000214873 511 ntTSL 5 BASIC17.62■□□□□ 0.41
Ushbp1Q8R370 1700037H04Rik-201ENSMUST00000028800 832 ntAPPRIS ALT1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Ushbp1Q8R370 Ube2f-201ENSMUST00000059743 1154 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Ushbp1Q8R370 Akap7-203ENSMUST00000100012 2321 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Ushbp1Q8R370 Jakmip1-202ENSMUST00000121010 2496 ntTSL 5 BASIC17.62■□□□□ 0.41
Ushbp1Q8R370 Atat1-214ENSMUST00000149277 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
Ushbp1Q8R370 Ube2r2-201ENSMUST00000040008 3600 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Ushbp1Q8R370 Zbtb16-202ENSMUST00000216150 2505 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Ushbp1Q8R370 Zyx-205ENSMUST00000203401 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
Ushbp1Q8R370 A4galt-201ENSMUST00000049530 2088 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Ushbp1Q8R370 Mob2-206ENSMUST00000211206 2140 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Ushbp1Q8R370 Iqck-201ENSMUST00000098087 1503 ntAPPRIS ALT2 TSL 5 BASIC17.62■□□□□ 0.41
Ushbp1Q8R370 App-207ENSMUST00000227737 2827 ntBASIC17.62■□□□□ 0.41
Ushbp1Q8R370 Mboat7-201ENSMUST00000038608 2878 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Ushbp1Q8R370 Srpr-201ENSMUST00000034541 2993 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Ushbp1Q8R370 Sh3bp2-203ENSMUST00000118545 3034 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
Ushbp1Q8R370 Grwd1-202ENSMUST00000131384 1974 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Ushbp1Q8R370 Pak4-202ENSMUST00000108283 2899 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Ushbp1Q8R370 Tmem65-201ENSMUST00000072113 3747 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Ushbp1Q8R370 Nkpd1-202ENSMUST00000207576 2916 ntAPPRIS P2 TSL 5 BASIC17.61■□□□□ 0.41
Ushbp1Q8R370 Gm13312-201ENSMUST00000119631 718 ntBASIC17.61■□□□□ 0.41
Ushbp1Q8R370 Smarca5-ps-202ENSMUST00000171805 1284 ntBASIC17.61■□□□□ 0.41
Ushbp1Q8R370 Dupd1-201ENSMUST00000073870 1138 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Ushbp1Q8R370 Sh3rf3-205ENSMUST00000153031 5682 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Ushbp1Q8R370 Mier2-212ENSMUST00000172158 1400 ntTSL 5 BASIC17.61■□□□□ 0.41
Ushbp1Q8R370 Wnt2b-201ENSMUST00000029429 3318 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Ushbp1Q8R370 Slc30a10-201ENSMUST00000061093 5836 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Ushbp1Q8R370 Wdr91-201ENSMUST00000081214 2682 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Ushbp1Q8R370 Arrdc1-201ENSMUST00000028349 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
Ushbp1Q8R370 Gm17501-201ENSMUST00000181247 1700 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Ushbp1Q8R370 Adamts19-201ENSMUST00000052907 4666 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Ushbp1Q8R370 Myc-202ENSMUST00000159327 2186 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Ushbp1Q8R370 Itm2c-201ENSMUST00000027425 2230 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Ushbp1Q8R370 Ank1-209ENSMUST00000121802 8218 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
Ushbp1Q8R370 Pten-201ENSMUST00000013807 8292 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Ushbp1Q8R370 CT010478.1-201ENSMUST00000220747 2787 ntBASIC17.6■□□□□ 0.41
Ushbp1Q8R370 Sptbn4-202ENSMUST00000108362 4861 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Ushbp1Q8R370 Keap1-201ENSMUST00000049567 3172 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
Ushbp1Q8R370 Dguok-202ENSMUST00000113888 1007 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Ushbp1Q8R370 Dguok-201ENSMUST00000014698 1107 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Ushbp1Q8R370 Gm17178-201ENSMUST00000163273 357 ntTSL 5 BASIC17.6■□□□□ 0.41
Ushbp1Q8R370 BC051226-201ENSMUST00000172526 837 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Ushbp1Q8R370 Gm27217-201ENSMUST00000183438 882 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Ushbp1Q8R370 Gm44202-201ENSMUST00000203549 532 ntTSL 3 BASIC17.6■□□□□ 0.41
Ushbp1Q8R370 Prm1-201ENSMUST00000023144 469 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Ushbp1Q8R370 Ndufb7-201ENSMUST00000036996 623 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Ushbp1Q8R370 Dnajb8-201ENSMUST00000061866 990 ntAPPRIS P1 BASIC17.6■□□□□ 0.41
Ushbp1Q8R370 Gm2694-204ENSMUST00000181898 1303 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Ushbp1Q8R370 Efemp2-204ENSMUST00000165485 1557 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Ushbp1Q8R370 Lmnb2-202ENSMUST00000105332 1643 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Ushbp1Q8R370 Tmem132c-201ENSMUST00000119026 5134 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Ushbp1Q8R370 Rmdn1-201ENSMUST00000029888 1734 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
Ushbp1Q8R370 Dok2-201ENSMUST00000022698 1795 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Ushbp1Q8R370 Ep300-201ENSMUST00000068387 9566 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Ushbp1Q8R370 Cpne6-203ENSMUST00000165262 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Ushbp1Q8R370 Gm10501-201ENSMUST00000151136 2200 ntTSL 2 BASIC17.6■□□□□ 0.41
Ushbp1Q8R370 Cdkl3-209ENSMUST00000120374 2770 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
Ushbp1Q8R370 Gk5-201ENSMUST00000085217 2815 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
Ushbp1Q8R370 Pi4k2b-202ENSMUST00000031082 3034 ntAPPRIS ALT2 TSL 2 BASIC17.6■□□□□ 0.41
Ushbp1Q8R370 Rabep1-201ENSMUST00000076270 5408 ntAPPRIS P2 TSL 1 (best) BASIC17.59■□□□□ 0.41
Ushbp1Q8R370 March8-201ENSMUST00000079012 4450 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Ushbp1Q8R370 Mbd6-201ENSMUST00000026476 4165 ntAPPRIS P3 TSL 5 BASIC17.59■□□□□ 0.41
Ushbp1Q8R370 Kbtbd2-202ENSMUST00000114323 3816 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Ushbp1Q8R370 Terf1-203ENSMUST00000188371 2268 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Ushbp1Q8R370 Ewsr1-202ENSMUST00000073308 2269 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
Ushbp1Q8R370 Mindy4-203ENSMUST00000204842 2211 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Ushbp1Q8R370 Jdp2-202ENSMUST00000171754 1559 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Ushbp1Q8R370 Gde1-201ENSMUST00000038791 1582 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Ushbp1Q8R370 Ret-202ENSMUST00000088790 4497 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
Ushbp1Q8R370 Rpsa-ps1-201ENSMUST00000191040 886 ntBASIC17.59■□□□□ 0.41
Ushbp1Q8R370 Fcnb-201ENSMUST00000028179 1170 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Ushbp1Q8R370 Fam214b-204ENSMUST00000107958 3280 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Ushbp1Q8R370 Arhgef10l-203ENSMUST00000097820 4382 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
Ushbp1Q8R370 Cbx8-201ENSMUST00000026663 3580 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Ushbp1Q8R370 Rnf168-203ENSMUST00000171474 4460 ntAPPRIS P2 TSL 1 (best) BASIC17.59■□□□□ 0.41
Ushbp1Q8R370 AC163637.1-201ENSMUST00000215491 1894 ntBASIC17.58■□□□□ 0.41
Ushbp1Q8R370 Kcnj6-202ENSMUST00000099508 3086 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
Ushbp1Q8R370 Arntl2-204ENSMUST00000111639 2923 ntAPPRIS P3 TSL 5 BASIC17.58■□□□□ 0.41
Ushbp1Q8R370 Idh2-201ENSMUST00000107384 1745 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
Ushbp1Q8R370 Nepro-201ENSMUST00000048788 2866 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
Ushbp1Q8R370 Hs3st5-203ENSMUST00000168572 2715 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
Ushbp1Q8R370 Sh2d4a-201ENSMUST00000066594 2718 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
Ushbp1Q8R370 Lbp-201ENSMUST00000016168 2525 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
Ushbp1Q8R370 Gm14261-201ENSMUST00000145105 1429 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
Ushbp1Q8R370 Mapt-202ENSMUST00000106988 2202 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.4
Ushbp1Q8R370 Fam185a-201ENSMUST00000056045 3027 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Ushbp1Q8R370 Trmt112-202ENSMUST00000116551 985 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Ushbp1Q8R370 Gm13830-201ENSMUST00000124378 417 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
Ushbp1Q8R370 Gm6257-201ENSMUST00000163864 910 ntBASIC17.58■□□□□ 0.4
Ushbp1Q8R370 Smim22-208ENSMUST00000185147 399 ntAPPRIS ALT2 TSL 2 BASIC17.58■□□□□ 0.4
Ushbp1Q8R370 Gm20324-201ENSMUST00000186291 1118 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
Ushbp1Q8R370 Gm29246-201ENSMUST00000189221 349 ntTSL 3 BASIC17.58■□□□□ 0.4
Ushbp1Q8R370 Gm44357-201ENSMUST00000195897 142 ntBASIC17.58■□□□□ 0.4
Ushbp1Q8R370 Gm19658-201ENSMUST00000196231 138 ntBASIC17.58■□□□□ 0.4
Retrieved 100 of 76,532 protein–RNA pairs in 17.1 ms