Protein–RNA interactions for Protein: Q62318

Trim28, Transcription intermediary factor 1-beta, mousemouse

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28Q62318 Prss45-202ENSMUST00000146794 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
Trim28Q62318 Lamtor4-201ENSMUST00000062067 877 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Trim28Q62318 Arl5c-201ENSMUST00000042971 1571 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Trim28Q62318 Gm20708-201ENSMUST00000132298 1780 ntAPPRIS P1 TSL 2 BASIC20.36■□□□□ 0.85
Trim28Q62318 Lhx6-203ENSMUST00000112963 3481 ntTSL 2 BASIC20.36■□□□□ 0.85
Trim28Q62318 Phf1-201ENSMUST00000073724 2429 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Trim28Q62318 Dera-201ENSMUST00000087675 1729 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Trim28Q62318 Fam103a1-202ENSMUST00000118190 1391 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Trim28Q62318 Pafah1b1-201ENSMUST00000021091 5803 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Trim28Q62318 Gm8281-202ENSMUST00000163719 1954 ntAPPRIS P1 TSL 5 BASIC20.36■□□□□ 0.85
Trim28Q62318 Kif17-204ENSMUST00000105821 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
Trim28Q62318 Rnps1-203ENSMUST00000163717 1920 ntAPPRIS P1 TSL 5 BASIC20.36■□□□□ 0.85
Trim28Q62318 Klk6-202ENSMUST00000107967 1172 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Trim28Q62318 Gm20481-201ENSMUST00000173680 564 ntAPPRIS P1 TSL 3 BASIC20.36■□□□□ 0.85
Trim28Q62318 Fam71e1-204ENSMUST00000205422 366 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
Trim28Q62318 Smim10l1-201ENSMUST00000100864 2842 ntAPPRIS P1 BASIC20.36■□□□□ 0.85
Trim28Q62318 Sft2d2-201ENSMUST00000043338 5535 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Trim28Q62318 Arhgef10-201ENSMUST00000084207 5528 ntAPPRIS P4 TSL 1 (best) BASIC20.36■□□□□ 0.85
Trim28Q62318 Ttc39b-202ENSMUST00000048274 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
Trim28Q62318 Wnt4-201ENSMUST00000045747 4194 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Trim28Q62318 Fuz-213ENSMUST00000209039 1453 ntTSL 5 BASIC20.36■□□□□ 0.85
Trim28Q62318 Rasip1-201ENSMUST00000057927 3202 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Trim28Q62318 Wac-207ENSMUST00000167020 5208 ntAPPRIS P3 TSL 1 (best) BASIC20.36■□□□□ 0.85
Trim28Q62318 Srcin1-201ENSMUST00000107590 5493 ntAPPRIS ALT2 TSL 5 BASIC20.36■□□□□ 0.85
Trim28Q62318 Tmf1-201ENSMUST00000095664 5732 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Trim28Q62318 Gm12689-201ENSMUST00000094955 1359 ntAPPRIS P1 BASIC20.35■□□□□ 0.85
Trim28Q62318 Gm5648-201ENSMUST00000122244 1587 ntBASIC20.35■□□□□ 0.85
Trim28Q62318 Atp2c1-204ENSMUST00000112558 5642 ntAPPRIS P3 TSL 1 (best) BASIC20.35■□□□□ 0.85
Trim28Q62318 Spr-201ENSMUST00000045986 1230 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Trim28Q62318 Klk15-201ENSMUST00000068625 845 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Trim28Q62318 Gapdh-201ENSMUST00000073605 1272 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Trim28Q62318 Gm29361-201ENSMUST00000183323 2000 ntBASIC20.35■□□□□ 0.85
Trim28Q62318 Cdv3-202ENSMUST00000072249 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
Trim28Q62318 Sobp-201ENSMUST00000040275 4980 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Trim28Q62318 Tril-201ENSMUST00000127748 5363 ntAPPRIS P1 BASIC20.35■□□□□ 0.85
Trim28Q62318 Fam69c-201ENSMUST00000052501 2153 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Trim28Q62318 Rps6kb2-202ENSMUST00000118483 1409 ntTSL 5 BASIC20.35■□□□□ 0.85
Trim28Q62318 Ccdc43-201ENSMUST00000092569 2366 ntAPPRIS P2 TSL 1 (best) BASIC20.35■□□□□ 0.85
Trim28Q62318 Adgra2-202ENSMUST00000178514 5129 ntTSL 5 BASIC20.35■□□□□ 0.85
Trim28Q62318 Rhot1-201ENSMUST00000017831 3029 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
Trim28Q62318 Akap7-203ENSMUST00000100012 2321 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
Trim28Q62318 Uri1-201ENSMUST00000085513 3441 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Trim28Q62318 Zfyve9-202ENSMUST00000106657 6459 ntAPPRIS P2 TSL 5 BASIC20.34■□□□□ 0.85
Trim28Q62318 Mtfr1l-202ENSMUST00000116279 1969 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Trim28Q62318 Tnfsf13-202ENSMUST00000108648 1503 ntAPPRIS ALT2 TSL 5 BASIC20.34■□□□□ 0.85
Trim28Q62318 Lyrm1-203ENSMUST00000106517 1279 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Trim28Q62318 Cdkn1a-203ENSMUST00000122348 857 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Trim28Q62318 Gm16151-201ENSMUST00000129696 639 ntTSL 3 BASIC20.34■□□□□ 0.85
Trim28Q62318 Haghl-211ENSMUST00000150324 1267 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Trim28Q62318 1700108N11Rik-201ENSMUST00000153051 917 ntTSL 2 BASIC20.34■□□□□ 0.85
Trim28Q62318 Gm27244-201ENSMUST00000184260 380 ntTSL 5 BASIC20.34■□□□□ 0.85
Trim28Q62318 Tpd52l1-202ENSMUST00000213528 969 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
Trim28Q62318 Msrb2-201ENSMUST00000023856 1196 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Trim28Q62318 Ptpn5-201ENSMUST00000033142 3145 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Trim28Q62318 Nf2-205ENSMUST00000109910 4720 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
Trim28Q62318 Lypd1-201ENSMUST00000027582 1447 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
Trim28Q62318 Tmem237-201ENSMUST00000087475 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
Trim28Q62318 Baz1a-201ENSMUST00000038926 6188 ntAPPRIS ALT2 TSL 5 BASIC20.34■□□□□ 0.85
Trim28Q62318 Il6st-208ENSMUST00000184311 2985 ntAPPRIS P2 TSL 5 BASIC20.34■□□□□ 0.85
Trim28Q62318 Hbegf-201ENSMUST00000025363 2373 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Trim28Q62318 Rab17-204ENSMUST00000131428 1557 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Trim28Q62318 Ilkap-201ENSMUST00000027534 1368 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Trim28Q62318 Mkrn3-201ENSMUST00000094340 2547 ntAPPRIS P1 BASIC20.33■□□□□ 0.85
Trim28Q62318 Tes-202ENSMUST00000115467 2440 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Trim28Q62318 Myef2-201ENSMUST00000067780 2999 ntAPPRIS ALT2 TSL 5 BASIC20.33■□□□□ 0.85
Trim28Q62318 Aimp2-202ENSMUST00000100483 1073 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
Trim28Q62318 Usf2-202ENSMUST00000108119 849 ntTSL 5 BASIC20.33■□□□□ 0.85
Trim28Q62318 Prmt7-203ENSMUST00000109297 1094 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
Trim28Q62318 Edn3-203ENSMUST00000140908 731 ntAPPRIS ALT2 TSL 5 BASIC20.33■□□□□ 0.85
Trim28Q62318 Gm10499-201ENSMUST00000174094 934 ntBASIC20.33■□□□□ 0.85
Trim28Q62318 Znrf1-213ENSMUST00000174333 515 ntTSL 3 BASIC20.33■□□□□ 0.85
Trim28Q62318 AC151286.1-201ENSMUST00000198489 145 ntBASIC20.33■□□□□ 0.85
Trim28Q62318 Aimp2-201ENSMUST00000031613 1185 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Trim28Q62318 Pmf1-201ENSMUST00000056370 1007 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Trim28Q62318 Cebpg-202ENSMUST00000130491 4709 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Trim28Q62318 Ggnbp2-203ENSMUST00000108081 3034 ntAPPRIS P2 TSL 5 BASIC20.33■□□□□ 0.84
Trim28Q62318 Anapc5-201ENSMUST00000086216 2760 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.84
Trim28Q62318 Dffb-201ENSMUST00000030893 2093 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
Trim28Q62318 Rnase10-202ENSMUST00000164632 1521 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
Trim28Q62318 Seh1l-201ENSMUST00000025421 3516 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Trim28Q62318 AC130669.1-201ENSMUST00000228537 1672 ntBASIC20.32■□□□□ 0.84
Trim28Q62318 Chmp2b-201ENSMUST00000004965 1838 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Trim28Q62318 Ccdc181-201ENSMUST00000027867 1909 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Trim28Q62318 Dbx1-201ENSMUST00000032717 2091 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Trim28Q62318 H13-203ENSMUST00000109825 1063 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
Trim28Q62318 Lgals3-204ENSMUST00000150290 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Trim28Q62318 Ankrd13d-204ENSMUST00000167215 639 ntTSL 3 BASIC20.32■□□□□ 0.84
Trim28Q62318 Ybx1-ps2-201ENSMUST00000201305 957 ntBASIC20.32■□□□□ 0.84
Trim28Q62318 Abhd18-207ENSMUST00000203892 1021 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
Trim28Q62318 Chchd1-203ENSMUST00000224633 557 ntBASIC20.32■□□□□ 0.84
Trim28Q62318 Cpne6-203ENSMUST00000165262 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Trim28Q62318 Alx1-204ENSMUST00000217946 1542 ntTSL 5 BASIC20.32■□□□□ 0.84
Trim28Q62318 Rab32-201ENSMUST00000019974 2149 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Trim28Q62318 Evx1-201ENSMUST00000031787 2877 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Trim28Q62318 Acvrl1-204ENSMUST00000120028 1932 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Trim28Q62318 Ddx39-202ENSMUST00000109810 1794 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
Trim28Q62318 AL691505.1-201ENSMUST00000219965 1618 ntTSL 5 BASIC20.31■□□□□ 0.84
Trim28Q62318 2810410L24Rik-202ENSMUST00000155681 2615 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Trim28Q62318 Zfp36l3-201ENSMUST00000071711 2347 ntAPPRIS P1 BASIC20.31■□□□□ 0.84
Trim28Q62318 Cacul1-201ENSMUST00000081790 5790 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
Retrieved 100 of 76,532 protein–RNA pairs in 49.4 ms