Protein–RNA interactions for Protein: Q61069

Usf1, Upstream stimulatory factor 1, mousemouse

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usf1Q61069 Acadvl-201ENSMUST00000018718 2020 ntAPPRIS ALT2 TSL 5 BASIC14.3□□□□□ -0.12
Usf1Q61069 Tle3-211ENSMUST00000161689 2836 ntTSL 2 BASIC14.3□□□□□ -0.12
Usf1Q61069 Mageh1-201ENSMUST00000051484 1410 ntAPPRIS P1 BASIC14.3□□□□□ -0.12
Usf1Q61069 Susd3-202ENSMUST00000058196 1418 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
Usf1Q61069 Vps4a-201ENSMUST00000034388 2178 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Usf1Q61069 Map3k10-201ENSMUST00000036453 3682 ntAPPRIS P2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Usf1Q61069 Mfsd13a-202ENSMUST00000128041 2223 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Usf1Q61069 Arpc4-201ENSMUST00000156898 2270 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Usf1Q61069 Rb1cc1-201ENSMUST00000027040 7607 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Usf1Q61069 A930012L18Rik-201ENSMUST00000181094 2364 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Usf1Q61069 Simc1-202ENSMUST00000121401 4819 ntAPPRIS P2 TSL 5 BASIC14.3□□□□□ -0.12
Usf1Q61069 Wdr45-201ENSMUST00000043045 1609 ntAPPRIS P2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Usf1Q61069 Sil1-201ENSMUST00000025215 1695 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Usf1Q61069 Efcab8-203ENSMUST00000175856 1703 ntAPPRIS ALT2 TSL 2 BASIC14.29□□□□□ -0.12
Usf1Q61069 Syngr3-201ENSMUST00000007236 1965 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Usf1Q61069 Cyp4f14-202ENSMUST00000179434 2207 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
Usf1Q61069 Cyp4f14-201ENSMUST00000054174 2207 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Usf1Q61069 Sri-205ENSMUST00000148633 2251 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Usf1Q61069 Chchd7-208ENSMUST00000121651 620 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Usf1Q61069 Gm11788-201ENSMUST00000142520 562 ntTSL 3 BASIC14.29□□□□□ -0.12
Usf1Q61069 Gm18889-201ENSMUST00000174284 929 ntBASIC14.29□□□□□ -0.12
Usf1Q61069 Gm5628-201ENSMUST00000222318 1049 ntBASIC14.29□□□□□ -0.12
Usf1Q61069 Zfp706-204ENSMUST00000226671 447 ntAPPRIS P1 BASIC14.29□□□□□ -0.12
Usf1Q61069 Chchd7-201ENSMUST00000041122 672 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Usf1Q61069 Foxs1-201ENSMUST00000099200 1311 ntAPPRIS P1 BASIC14.29□□□□□ -0.12
Usf1Q61069 Mlxip-202ENSMUST00000111596 2653 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Usf1Q61069 Dag1-201ENSMUST00000080435 4364 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Usf1Q61069 Fuz-201ENSMUST00000071207 1698 ntAPPRIS P2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Usf1Q61069 Ggn-204ENSMUST00000208330 2205 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
Usf1Q61069 Cyth2-201ENSMUST00000056820 2527 ntAPPRIS ALT1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Usf1Q61069 Agap1-202ENSMUST00000074945 10069 ntTSL 5 BASIC14.28□□□□□ -0.12
Usf1Q61069 Sart3-201ENSMUST00000019118 4447 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Usf1Q61069 Gm13306-202ENSMUST00000108018 542 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Usf1Q61069 Usp13-202ENSMUST00000108228 2767 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Usf1Q61069 Slc46a1-201ENSMUST00000001126 1978 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Usf1Q61069 Trnt1-203ENSMUST00000113248 1398 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Usf1Q61069 Renbp-201ENSMUST00000114379 1318 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Usf1Q61069 Zfp715-201ENSMUST00000012796 907 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Usf1Q61069 Gm14104-201ENSMUST00000135990 356 ntTSL 5 BASIC14.28□□□□□ -0.12
Usf1Q61069 Hpca-207ENSMUST00000139450 812 ntAPPRIS P1 TSL 3 BASIC14.28□□□□□ -0.12
Usf1Q61069 Gm15825-201ENSMUST00000159108 918 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Usf1Q61069 Gm6257-201ENSMUST00000163864 910 ntBASIC14.28□□□□□ -0.12
Usf1Q61069 A430057M04Rik-202ENSMUST00000170150 2176 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Usf1Q61069 Mpped1-210ENSMUST00000172115 795 ntTSL 3 BASIC14.28□□□□□ -0.12
Usf1Q61069 Mpped1-211ENSMUST00000172398 795 ntTSL 3 BASIC14.28□□□□□ -0.12
Usf1Q61069 Nnat-209ENSMUST00000173793 386 ntTSL 5 BASIC14.28□□□□□ -0.12
Usf1Q61069 Prr29-205ENSMUST00000190268 1141 ntAPPRIS ALT2 TSL 5 BASIC14.28□□□□□ -0.12
Usf1Q61069 Gm43125-201ENSMUST00000201724 730 ntBASIC14.28□□□□□ -0.12
Usf1Q61069 Gm45091-201ENSMUST00000205799 504 ntTSL 3 BASIC14.28□□□□□ -0.12
Usf1Q61069 Plpp4-203ENSMUST00000205896 714 ntTSL 5 BASIC14.28□□□□□ -0.12
Usf1Q61069 Gm29683-202ENSMUST00000208511 720 ntTSL 3 BASIC14.28□□□□□ -0.12
Usf1Q61069 1700016B15Rik-201ENSMUST00000209027 733 ntBASIC14.28□□□□□ -0.12
Usf1Q61069 Lrrc36-206ENSMUST00000216765 2301 ntAPPRIS ALT2 TSL 5 BASIC14.28□□□□□ -0.12
Usf1Q61069 Thap2-203ENSMUST00000218989 527 ntBASIC14.28□□□□□ -0.12
Usf1Q61069 Sorbs1-225ENSMUST00000226047 2582 ntAPPRIS ALT2 BASIC14.28□□□□□ -0.12
Usf1Q61069 Zfp119b-201ENSMUST00000056147 1889 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Usf1Q61069 Neu1-201ENSMUST00000007253 2474 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Usf1Q61069 Dmkn-203ENSMUST00000085688 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Usf1Q61069 Esyt2-205ENSMUST00000220816 4287 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Usf1Q61069 Zranb2-203ENSMUST00000106058 2924 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Usf1Q61069 Clasp2-204ENSMUST00000213663 2727 ntTSL 5 BASIC14.28□□□□□ -0.12
Usf1Q61069 Pid1-201ENSMUST00000168574 2664 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Usf1Q61069 Mag-201ENSMUST00000040548 2419 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.12
Usf1Q61069 Mfge8-201ENSMUST00000032825 2125 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.12
Usf1Q61069 Trhde-201ENSMUST00000061632 5714 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Usf1Q61069 N6amt1-201ENSMUST00000054442 1884 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Usf1Q61069 Lrrfip2-207ENSMUST00000197256 1819 ntTSL 5 BASIC14.27□□□□□ -0.12
Usf1Q61069 Casq1-201ENSMUST00000003554 1847 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Usf1Q61069 Pcdh1-203ENSMUST00000160721 5416 ntTSL 5 BASIC14.27□□□□□ -0.12
Usf1Q61069 Lmnb2-202ENSMUST00000105332 1643 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
Usf1Q61069 Gtf2e2-201ENSMUST00000167264 1566 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Usf1Q61069 AC122301.2-201ENSMUST00000219020 1474 ntTSL 5 BASIC14.27□□□□□ -0.12
Usf1Q61069 Csnk1e-201ENSMUST00000117786 2694 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Usf1Q61069 Folr1-204ENSMUST00000106985 1313 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.12
Usf1Q61069 Gm26728-202ENSMUST00000203423 1333 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
Usf1Q61069 Plcxd1-201ENSMUST00000086687 1346 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Usf1Q61069 0610010K14Rik-204ENSMUST00000102569 778 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.13
Usf1Q61069 Rerg-203ENSMUST00000119610 890 ntTSL 3 BASIC14.27□□□□□ -0.13
Usf1Q61069 Cmc2-202ENSMUST00000128304 394 ntTSL 5 BASIC14.27□□□□□ -0.13
Usf1Q61069 Gm22175-201ENSMUST00000175007 78 ntBASIC14.27□□□□□ -0.13
Usf1Q61069 Gm35911-201ENSMUST00000198837 677 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.13
Usf1Q61069 Gpr146-202ENSMUST00000053120 1040 ntBASIC14.27□□□□□ -0.13
Usf1Q61069 Hist1h3g-201ENSMUST00000080859 530 ntAPPRIS P1 BASIC14.27□□□□□ -0.13
Usf1Q61069 Rara-204ENSMUST00000107475 2469 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Usf1Q61069 Pde5a-204ENSMUST00000200389 7603 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.13
Usf1Q61069 Ube2w-201ENSMUST00000117146 2181 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Usf1Q61069 Pkn2-201ENSMUST00000043812 6207 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Usf1Q61069 Ppp2r5e-201ENSMUST00000021447 4810 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Usf1Q61069 H6pd-201ENSMUST00000030830 4745 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.13
Usf1Q61069 Fam57b-207ENSMUST00000207020 1777 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Usf1Q61069 Sirt6-202ENSMUST00000119324 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Usf1Q61069 Tmco1-204ENSMUST00000195015 1573 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Usf1Q61069 Tsc22d2-203ENSMUST00000199164 4659 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Usf1Q61069 Ndufs2-202ENSMUST00000111318 1545 ntTSL 5 BASIC14.26□□□□□ -0.13
Usf1Q61069 Dnlz-201ENSMUST00000028295 2916 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Usf1Q61069 Arl1-202ENSMUST00000116234 2080 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Usf1Q61069 Psmb10-201ENSMUST00000034369 1311 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Usf1Q61069 Cep104-201ENSMUST00000047497 5151 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Usf1Q61069 Mafg-203ENSMUST00000106181 840 ntAPPRIS P1 TSL 3 BASIC14.26□□□□□ -0.13
Usf1Q61069 Gm11505-201ENSMUST00000130442 737 ntTSL 3 BASIC14.26□□□□□ -0.13
Retrieved 100 of 76,532 protein–RNA pairs in 54.9 ms