Protein–RNA interactions for Protein: Q5U4C3

Scaf1, Splicing factor, arginine/serine-rich 19, mousemouse

Known RBP Predictions only

Length 1,256 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scaf1Q5U4C3 Tpi1-205ENSMUST00000172132 1607 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Scaf1Q5U4C3 Hnrnpa2b1-201ENSMUST00000069949 1647 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Scaf1Q5U4C3 Rnf13-205ENSMUST00000198214 2027 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Scaf1Q5U4C3 Fam46a-202ENSMUST00000187711 5648 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
Scaf1Q5U4C3 Stk39-201ENSMUST00000102715 3536 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Scaf1Q5U4C3 Rd3-203ENSMUST00000181512 1760 ntTSL 5 BASIC20.44■□□□□ 0.86
Scaf1Q5U4C3 1700022A21Rik-202ENSMUST00000182910 1448 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Scaf1Q5U4C3 Ina-201ENSMUST00000037636 3240 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Scaf1Q5U4C3 Nr1d2-201ENSMUST00000090543 4663 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Scaf1Q5U4C3 Mkrn3-201ENSMUST00000094340 2547 ntAPPRIS P1 BASIC20.44■□□□□ 0.86
Scaf1Q5U4C3 Rimbp3-201ENSMUST00000169803 5787 ntAPPRIS P1 BASIC20.44■□□□□ 0.86
Scaf1Q5U4C3 Gm45244-201ENSMUST00000211328 2200 ntBASIC20.43■□□□□ 0.86
Scaf1Q5U4C3 Dlg3-204ENSMUST00000113736 4940 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
Scaf1Q5U4C3 Gm27198-201ENSMUST00000184172 1517 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
Scaf1Q5U4C3 Matk-203ENSMUST00000119547 1916 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
Scaf1Q5U4C3 Ercc6l2-203ENSMUST00000067821 2743 ntAPPRIS P1 TSL 5 BASIC20.43■□□□□ 0.86
Scaf1Q5U4C3 Poglut1-201ENSMUST00000036210 2758 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Scaf1Q5U4C3 Ankle2-201ENSMUST00000031474 5215 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
Scaf1Q5U4C3 Nploc4-202ENSMUST00000103017 4025 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
Scaf1Q5U4C3 Pdzd11-201ENSMUST00000015812 1626 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Scaf1Q5U4C3 Ccdc149-201ENSMUST00000059428 3295 ntAPPRIS P1 TSL 5 BASIC20.43■□□□□ 0.86
Scaf1Q5U4C3 Asph-204ENSMUST00000084915 2884 ntTSL 5 BASIC20.43■□□□□ 0.86
Scaf1Q5U4C3 Gm25287-201ENSMUST00000103846 110 ntBASIC20.43■□□□□ 0.86
Scaf1Q5U4C3 Gm22918-201ENSMUST00000103855 110 ntBASIC20.43■□□□□ 0.86
Scaf1Q5U4C3 Tmsb10-203ENSMUST00000114050 570 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Scaf1Q5U4C3 Gm10244-202ENSMUST00000156905 474 ntTSL 3 BASIC20.43■□□□□ 0.86
Scaf1Q5U4C3 Hoxb8-203ENSMUST00000168043 1141 ntAPPRIS P1 TSL 5 BASIC20.43■□□□□ 0.86
Scaf1Q5U4C3 Gm29520-201ENSMUST00000191209 1067 ntTSL 5 BASIC20.43■□□□□ 0.86
Scaf1Q5U4C3 Gm29202-201ENSMUST00000191263 422 ntTSL 5 BASIC20.43■□□□□ 0.86
Scaf1Q5U4C3 Gm18057-201ENSMUST00000208220 503 ntBASIC20.43■□□□□ 0.86
Scaf1Q5U4C3 AC158804.1-201ENSMUST00000219046 541 ntTSL 3 BASIC20.43■□□□□ 0.86
Scaf1Q5U4C3 Ftl1-ps1-202ENSMUST00000222435 938 ntAPPRIS P1 BASIC20.43■□□□□ 0.86
Scaf1Q5U4C3 Pold4-201ENSMUST00000025773 910 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Scaf1Q5U4C3 Smim4-202ENSMUST00000064032 791 ntTSL 3 BASIC20.43■□□□□ 0.86
Scaf1Q5U4C3 G0s2-201ENSMUST00000009777 871 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Scaf1Q5U4C3 Tmub1-201ENSMUST00000030799 1333 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Scaf1Q5U4C3 Sri-205ENSMUST00000148633 2251 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Scaf1Q5U4C3 Evx2-201ENSMUST00000001867 4191 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
Scaf1Q5U4C3 Alkbh5-201ENSMUST00000044250 5730 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Scaf1Q5U4C3 Exoc3l2-202ENSMUST00000137613 4016 ntAPPRIS P1 TSL 5 BASIC20.43■□□□□ 0.86
Scaf1Q5U4C3 Rhd-201ENSMUST00000030627 1514 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Scaf1Q5U4C3 Zfp326-201ENSMUST00000031227 2667 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Scaf1Q5U4C3 Rab35-201ENSMUST00000031492 2820 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Scaf1Q5U4C3 Uts2r-201ENSMUST00000039044 1703 ntAPPRIS P1 BASIC20.42■□□□□ 0.86
Scaf1Q5U4C3 AC025913.2-201ENSMUST00000220136 1766 ntBASIC20.42■□□□□ 0.86
Scaf1Q5U4C3 Atp2c1-205ENSMUST00000163879 2408 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
Scaf1Q5U4C3 Fiz1-201ENSMUST00000077385 2546 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Scaf1Q5U4C3 App-201ENSMUST00000005406 3176 ntAPPRIS P2 TSL 1 (best) BASIC20.42■□□□□ 0.86
Scaf1Q5U4C3 Acvr1c-203ENSMUST00000112607 1266 ntTSL 5 BASIC20.42■□□□□ 0.86
Scaf1Q5U4C3 Taf3-202ENSMUST00000114906 583 ntTSL 2 BASIC20.42■□□□□ 0.86
Scaf1Q5U4C3 Mmab-203ENSMUST00000123256 1277 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
Scaf1Q5U4C3 Gm18889-201ENSMUST00000174284 929 ntBASIC20.42■□□□□ 0.86
Scaf1Q5U4C3 1190007I07Rik-204ENSMUST00000183416 637 ntTSL 2 BASIC20.42■□□□□ 0.86
Scaf1Q5U4C3 Trip6-203ENSMUST00000199121 366 ntTSL 3 BASIC20.42■□□□□ 0.86
Scaf1Q5U4C3 Krt84-201ENSMUST00000023720 2570 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Scaf1Q5U4C3 Psmd12-203ENSMUST00000106752 1955 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
Scaf1Q5U4C3 Akp-ps1-202ENSMUST00000212812 1959 ntTSL 5 BASIC20.42■□□□□ 0.86
Scaf1Q5U4C3 Zic3-202ENSMUST00000088629 1951 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
Scaf1Q5U4C3 Fam221a-201ENSMUST00000060561 2730 ntAPPRIS P3 TSL 1 (best) BASIC20.42■□□□□ 0.86
Scaf1Q5U4C3 Nr1i3-203ENSMUST00000111328 1359 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
Scaf1Q5U4C3 Mark2-209ENSMUST00000165965 2874 ntAPPRIS P4 TSL 1 (best) BASIC20.42■□□□□ 0.86
Scaf1Q5U4C3 Stk11-202ENSMUST00000105370 1474 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
Scaf1Q5U4C3 Tspan32-204ENSMUST00000105923 1499 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
Scaf1Q5U4C3 Nudt18-203ENSMUST00000228768 1578 ntBASIC20.42■□□□□ 0.86
Scaf1Q5U4C3 Pde4d-208ENSMUST00000120671 2455 ntTSL 5 BASIC20.42■□□□□ 0.86
Scaf1Q5U4C3 Arhgap23-203ENSMUST00000121799 5816 ntAPPRIS P1 TSL 5 BASIC20.42■□□□□ 0.86
Scaf1Q5U4C3 Gfm2-211ENSMUST00000161913 1829 ntTSL 2 BASIC20.41■□□□□ 0.86
Scaf1Q5U4C3 Cdc23-201ENSMUST00000025228 2084 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Scaf1Q5U4C3 Adcy2-201ENSMUST00000022013 4211 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Scaf1Q5U4C3 A930004D18Rik-201ENSMUST00000066163 3217 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Scaf1Q5U4C3 D16Ertd472e-203ENSMUST00000114220 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Scaf1Q5U4C3 Rerg-203ENSMUST00000119610 890 ntTSL 3 BASIC20.41■□□□□ 0.86
Scaf1Q5U4C3 1810062O18Rik-203ENSMUST00000129237 647 ntTSL 5 BASIC20.41■□□□□ 0.86
Scaf1Q5U4C3 6030443J06Rik-204ENSMUST00000195898 786 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Scaf1Q5U4C3 Nmur1-202ENSMUST00000212058 1287 ntAPPRIS P3 TSL 5 BASIC20.41■□□□□ 0.86
Scaf1Q5U4C3 Ccdc88c-204ENSMUST00000223097 1253 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Scaf1Q5U4C3 4933412A08Rik-201ENSMUST00000061046 1343 ntBASIC20.41■□□□□ 0.86
Scaf1Q5U4C3 Parp16-205ENSMUST00000216702 1643 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Scaf1Q5U4C3 Fam170b-201ENSMUST00000104926 1694 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
Scaf1Q5U4C3 Fam241b-204ENSMUST00000125704 1769 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Scaf1Q5U4C3 Rps6ka2-201ENSMUST00000024575 5404 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Scaf1Q5U4C3 Gps1-208ENSMUST00000208737 1843 ntAPPRIS ALT1 TSL 5 BASIC20.41■□□□□ 0.86
Scaf1Q5U4C3 Atp9a-203ENSMUST00000109176 3691 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Scaf1Q5U4C3 AC121598.2-201ENSMUST00000228376 2325 ntBASIC20.41■□□□□ 0.86
Scaf1Q5U4C3 Ube2d3-202ENSMUST00000166033 2504 ntAPPRIS P2 TSL 1 (best) BASIC20.41■□□□□ 0.86
Scaf1Q5U4C3 Ppfia1-201ENSMUST00000168134 5181 ntAPPRIS P3 TSL 1 (best) BASIC20.4■□□□□ 0.86
Scaf1Q5U4C3 Nkpd1-201ENSMUST00000078908 2753 ntAPPRIS P2 TSL 1 (best) BASIC20.4■□□□□ 0.86
Scaf1Q5U4C3 Scube2-202ENSMUST00000106728 2890 ntAPPRIS ALT2 TSL 5 BASIC20.4■□□□□ 0.86
Scaf1Q5U4C3 Hoga1-204ENSMUST00000172244 631 ntTSL 5 BASIC20.4■□□□□ 0.86
Scaf1Q5U4C3 Gm18737-201ENSMUST00000173594 937 ntBASIC20.4■□□□□ 0.86
Scaf1Q5U4C3 Gm26517-201ENSMUST00000181279 1172 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
Scaf1Q5U4C3 Arfgap1-213ENSMUST00000184394 1209 ntAPPRIS ALT2 TSL 5 BASIC20.4■□□□□ 0.86
Scaf1Q5U4C3 Gm42560-201ENSMUST00000201216 1023 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
Scaf1Q5U4C3 Atf5-203ENSMUST00000209072 595 ntTSL 5 BASIC20.4■□□□□ 0.86
Scaf1Q5U4C3 AL691505.1-201ENSMUST00000219965 1618 ntTSL 5 BASIC20.4■□□□□ 0.86
Scaf1Q5U4C3 Pfkfb4-201ENSMUST00000051873 3316 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
Scaf1Q5U4C3 Rxfp4-201ENSMUST00000063119 1245 ntAPPRIS P1 BASIC20.4■□□□□ 0.86
Scaf1Q5U4C3 Pcna-ps2-201ENSMUST00000088040 1257 ntAPPRIS P1 BASIC20.4■□□□□ 0.86
Scaf1Q5U4C3 Gm45774-201ENSMUST00000211992 2665 ntBASIC20.4■□□□□ 0.86
Scaf1Q5U4C3 Rab37-202ENSMUST00000067754 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
Retrieved 100 of 76,532 protein–RNA pairs in 49.8 ms