Protein–RNA interactions for Protein: Q5R1I8

Trav3-1, T cell receptor alpha variable 3-1 (Fragment), mousemouse

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav3-1Q5R1I8 Ctdspl2-201ENSMUST00000036647 5053 ntAPPRIS P3 TSL 1 (best) BASIC10.67□□□□□ -0.7
Trav3-1Q5R1I8 Sox17-206ENSMUST00000192650 3242 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
Trav3-1Q5R1I8 Nsd3-204ENSMUST00000139966 5261 ntAPPRIS ALT2 TSL 5 BASIC10.67□□□□□ -0.7
Trav3-1Q5R1I8 Gpr35-205ENSMUST00000186298 2647 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
Trav3-1Q5R1I8 Gm17200-201ENSMUST00000170214 2022 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
Trav3-1Q5R1I8 Alx1-205ENSMUST00000218282 2012 ntAPPRIS P1 TSL 5 BASIC10.67□□□□□ -0.7
Trav3-1Q5R1I8 Tcf19-202ENSMUST00000160885 1732 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
Trav3-1Q5R1I8 Zdhhc1-201ENSMUST00000044286 1737 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
Trav3-1Q5R1I8 Gm26507-201ENSMUST00000181838 1410 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
Trav3-1Q5R1I8 4930524O07Rik-203ENSMUST00000193135 2289 ntBASIC10.67□□□□□ -0.7
Trav3-1Q5R1I8 Gm35339-201ENSMUST00000208833 5090 ntAPPRIS P1 TSL 5 BASIC10.66□□□□□ -0.7
Trav3-1Q5R1I8 Mbp-205ENSMUST00000091789 4797 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
Trav3-1Q5R1I8 Lmbr1l-202ENSMUST00000109127 2548 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
Trav3-1Q5R1I8 Samm50-201ENSMUST00000023071 1673 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Trav3-1Q5R1I8 Nudt21-201ENSMUST00000034204 5010 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Trav3-1Q5R1I8 R74862-202ENSMUST00000133630 2482 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
Trav3-1Q5R1I8 Rarg-201ENSMUST00000043172 2953 ntAPPRIS P3 TSL 1 (best) BASIC10.66□□□□□ -0.7
Trav3-1Q5R1I8 Caprin2-201ENSMUST00000072324 2952 ntAPPRIS ALT2 TSL 5 BASIC10.66□□□□□ -0.7
Trav3-1Q5R1I8 Strip2-201ENSMUST00000046028 5370 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Trav3-1Q5R1I8 Isl2-201ENSMUST00000034869 1854 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Trav3-1Q5R1I8 Olfm1-202ENSMUST00000100244 2686 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
Trav3-1Q5R1I8 Cdkn2aip-201ENSMUST00000038738 3464 ntAPPRIS ALT2 TSL 1 (best) BASIC10.66□□□□□ -0.7
Trav3-1Q5R1I8 Zfp382-201ENSMUST00000098596 2117 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Trav3-1Q5R1I8 Fam50b-202ENSMUST00000221037 1345 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Trav3-1Q5R1I8 Rbm7-202ENSMUST00000213276 2629 ntTSL 2 BASIC10.66□□□□□ -0.7
Trav3-1Q5R1I8 Hist1h1c-201ENSMUST00000040914 1560 ntAPPRIS P1 BASIC10.66□□□□□ -0.7
Trav3-1Q5R1I8 Slc8b1-201ENSMUST00000068326 2898 ntAPPRIS P2 TSL 1 (best) BASIC10.66□□□□□ -0.7
Trav3-1Q5R1I8 Lzts1-201ENSMUST00000037049 1800 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Trav3-1Q5R1I8 Gm26777-201ENSMUST00000181852 2573 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
Trav3-1Q5R1I8 Ubqln2-201ENSMUST00000060714 3344 ntAPPRIS P1 BASIC10.66□□□□□ -0.7
Trav3-1Q5R1I8 Gm16049-201ENSMUST00000155166 616 ntTSL 3 BASIC10.66□□□□□ -0.7
Trav3-1Q5R1I8 4930539J05Rik-202ENSMUST00000182865 511 ntTSL 2 BASIC10.66□□□□□ -0.7
Trav3-1Q5R1I8 Zcchc13-201ENSMUST00000033692 1085 ntAPPRIS P1 BASIC10.66□□□□□ -0.7
Trav3-1Q5R1I8 Trir-201ENSMUST00000047281 902 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Trav3-1Q5R1I8 Wipf1-202ENSMUST00000102679 2039 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Trav3-1Q5R1I8 Cfap97-202ENSMUST00000110376 2043 ntAPPRIS ALT2 TSL 5 BASIC10.66□□□□□ -0.7
Trav3-1Q5R1I8 Tmem184a-201ENSMUST00000044002 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC10.66□□□□□ -0.7
Trav3-1Q5R1I8 Lmbr1-204ENSMUST00000198105 2274 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
Trav3-1Q5R1I8 Pid1-207ENSMUST00000177458 2521 ntTSL 2 BASIC10.66□□□□□ -0.7
Trav3-1Q5R1I8 Kdm2a-201ENSMUST00000047898 8578 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Trav3-1Q5R1I8 Rgs12-202ENSMUST00000087684 4713 ntAPPRIS ALT2 TSL 5 BASIC10.66□□□□□ -0.7
Trav3-1Q5R1I8 Mrpl3-201ENSMUST00000035177 3972 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Trav3-1Q5R1I8 Pgghg-201ENSMUST00000079403 2981 ntAPPRIS P2 TSL 1 (best) BASIC10.66□□□□□ -0.7
Trav3-1Q5R1I8 Gm26513-201ENSMUST00000181802 2489 ntBASIC10.66□□□□□ -0.7
Trav3-1Q5R1I8 Os9-201ENSMUST00000080975 2458 ntAPPRIS P3 TSL 1 (best) BASIC10.66□□□□□ -0.7
Trav3-1Q5R1I8 Tmem55b-209ENSMUST00000162957 1465 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
Trav3-1Q5R1I8 Slc33a1-201ENSMUST00000029402 3150 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Trav3-1Q5R1I8 Dlgap3-202ENSMUST00000106092 2901 ntTSL 5 BASIC10.66□□□□□ -0.7
Trav3-1Q5R1I8 Dennd6b-201ENSMUST00000078953 4607 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Trav3-1Q5R1I8 Fam69c-201ENSMUST00000052501 2153 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Trav3-1Q5R1I8 Nckipsd-201ENSMUST00000035218 3360 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Trav3-1Q5R1I8 Colgalt2-201ENSMUST00000044311 4093 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Trav3-1Q5R1I8 Scarf1-201ENSMUST00000042808 2887 ntAPPRIS P2 TSL 1 (best) BASIC10.66□□□□□ -0.7
Trav3-1Q5R1I8 Sstr4-201ENSMUST00000109962 1424 ntAPPRIS P1 BASIC10.66□□□□□ -0.7
Trav3-1Q5R1I8 Ankrd9-207ENSMUST00000148765 1431 ntAPPRIS P2 TSL 2 BASIC10.66□□□□□ -0.7
Trav3-1Q5R1I8 Nat14-204ENSMUST00000207687 1415 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Trav3-1Q5R1I8 Tex13b-201ENSMUST00000044179 2116 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Trav3-1Q5R1I8 Usp1-202ENSMUST00000091358 3527 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Trav3-1Q5R1I8 Pla2g15-204ENSMUST00000212963 2578 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
Trav3-1Q5R1I8 Zfp444-203ENSMUST00000108566 1648 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Trav3-1Q5R1I8 Gnb2-204ENSMUST00000111027 1610 ntTSL 5 BASIC10.66□□□□□ -0.7
Trav3-1Q5R1I8 Il15ra-201ENSMUST00000078834 1600 ntAPPRIS P3 TSL 5 BASIC10.66□□□□□ -0.7
Trav3-1Q5R1I8 Usp33-201ENSMUST00000026507 4153 ntAPPRIS ALT2 TSL 1 (best) BASIC10.66□□□□□ -0.7
Trav3-1Q5R1I8 Gpsm1-203ENSMUST00000078616 3127 ntTSL 1 (best) BASIC10.65□□□□□ -0.7
Trav3-1Q5R1I8 Nup205-204ENSMUST00000201374 6411 ntAPPRIS ALT2 TSL 1 (best) BASIC10.65□□□□□ -0.7
Trav3-1Q5R1I8 Mfsd3-201ENSMUST00000019224 2169 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.7
Trav3-1Q5R1I8 Zfp784-201ENSMUST00000062428 2153 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.7
Trav3-1Q5R1I8 Ube3a-216ENSMUST00000202945 3889 ntTSL 1 (best) BASIC10.65□□□□□ -0.7
Trav3-1Q5R1I8 Cacna2d2-208ENSMUST00000170737 5332 ntAPPRIS ALT2 TSL 1 (best) BASIC10.65□□□□□ -0.7
Trav3-1Q5R1I8 Rps14-202ENSMUST00000118551 602 ntAPPRIS P1 TSL 2 BASIC10.65□□□□□ -0.7
Trav3-1Q5R1I8 Gm25927-201ENSMUST00000175058 117 ntBASIC10.65□□□□□ -0.7
Trav3-1Q5R1I8 Mir8112-201ENSMUST00000184382 131 ntBASIC10.65□□□□□ -0.7
Trav3-1Q5R1I8 Gm10657-201ENSMUST00000193528 1031 ntBASIC10.65□□□□□ -0.7
Trav3-1Q5R1I8 Gm38094-201ENSMUST00000195864 2978 ntBASIC10.65□□□□□ -0.7
Trav3-1Q5R1I8 4930527J03Rik-201ENSMUST00000094270 543 ntBASIC10.65□□□□□ -0.7
Trav3-1Q5R1I8 AC166491.1-201ENSMUST00000227053 2308 ntBASIC10.65□□□□□ -0.7
Trav3-1Q5R1I8 Rnf34-201ENSMUST00000031434 4440 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.7
Trav3-1Q5R1I8 Gm37240-203ENSMUST00000154148 2913 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.7
Trav3-1Q5R1I8 Rnf185-201ENSMUST00000064364 2906 ntTSL 1 (best) BASIC10.65□□□□□ -0.7
Trav3-1Q5R1I8 Agfg1-205ENSMUST00000187899 2078 ntTSL 5 BASIC10.65□□□□□ -0.7
Trav3-1Q5R1I8 Lingo1-202ENSMUST00000114247 2287 ntTSL 1 (best) BASIC10.65□□□□□ -0.7
Trav3-1Q5R1I8 C530008M17Rik-211ENSMUST00000163347 6835 ntAPPRIS P2 TSL 1 (best) BASIC10.65□□□□□ -0.7
Trav3-1Q5R1I8 Xndc1-201ENSMUST00000094130 2298 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.7
Trav3-1Q5R1I8 Nupl1-207ENSMUST00000225311 2475 ntBASIC10.65□□□□□ -0.7
Trav3-1Q5R1I8 Lrwd1-201ENSMUST00000006301 2473 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.7
Trav3-1Q5R1I8 R3hdm2-212ENSMUST00000166820 4281 ntAPPRIS P2 TSL 5 BASIC10.65□□□□□ -0.7
Trav3-1Q5R1I8 Rnf40-202ENSMUST00000205694 5279 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.7
Trav3-1Q5R1I8 Gm4780-202ENSMUST00000215200 2644 ntBASIC10.65□□□□□ -0.71
Trav3-1Q5R1I8 Ddx4-202ENSMUST00000099166 3012 ntAPPRIS ALT2 TSL 1 (best) BASIC10.65□□□□□ -0.71
Trav3-1Q5R1I8 Fgfr2-207ENSMUST00000117872 4223 ntAPPRIS ALT2 TSL 1 (best) BASIC10.65□□□□□ -0.71
Trav3-1Q5R1I8 Epha5-204ENSMUST00000113401 5158 ntTSL 1 (best) BASIC10.65□□□□□ -0.71
Trav3-1Q5R1I8 Kmt5b-205ENSMUST00000113972 4159 ntAPPRIS ALT2 TSL 5 BASIC10.65□□□□□ -0.71
Trav3-1Q5R1I8 Kmt5b-207ENSMUST00000113974 4150 ntAPPRIS P3 TSL 5 BASIC10.65□□□□□ -0.71
Trav3-1Q5R1I8 Ece2-201ENSMUST00000003898 3152 ntAPPRIS P3 TSL 1 (best) BASIC10.65□□□□□ -0.71
Trav3-1Q5R1I8 Tfe3-202ENSMUST00000079542 3163 ntTSL 1 (best) BASIC10.65□□□□□ -0.71
Trav3-1Q5R1I8 Tmem220-201ENSMUST00000061786 1597 ntAPPRIS ALT2 TSL 1 (best) BASIC10.65□□□□□ -0.71
Trav3-1Q5R1I8 Gtf2ird1-229ENSMUST00000202554 3514 ntAPPRIS ALT2 TSL 1 (best) BASIC10.64□□□□□ -0.71
Trav3-1Q5R1I8 Slc13a5-201ENSMUST00000021161 3329 ntAPPRIS P2 TSL 1 (best) BASIC10.64□□□□□ -0.71
Trav3-1Q5R1I8 Mob1b-201ENSMUST00000006424 2705 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
Trav3-1Q5R1I8 Cacna1b-205ENSMUST00000114447 6987 ntAPPRIS ALT2 TSL 5 BASIC10.64□□□□□ -0.71
Retrieved 100 of 76,532 protein–RNA pairs in 27.7 ms