Protein–RNA interactions for Protein: Q5QNQ9

Col27a1, Collagen alpha-1(XXVII) chain, mousemouse

Predictions only

Length 1,845 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col27a1Q5QNQ9 Pdlim7-203ENSMUST00000069968 1006 ntTSL 1 (best) BASIC15.05■□□□□ -0
Col27a1Q5QNQ9 Agfg2-202ENSMUST00000100544 2858 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ -0
Col27a1Q5QNQ9 Mlxip-202ENSMUST00000111596 2653 ntTSL 1 (best) BASIC15.05■□□□□ -0
Col27a1Q5QNQ9 Hpcal4-202ENSMUST00000106246 1627 ntAPPRIS P1 TSL 5 BASIC15.05■□□□□ -0
Col27a1Q5QNQ9 Eepd1-201ENSMUST00000040677 2723 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Col27a1Q5QNQ9 Nptx2-201ENSMUST00000071782 2536 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Col27a1Q5QNQ9 Fam241b-204ENSMUST00000125704 1769 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Col27a1Q5QNQ9 Usp13-202ENSMUST00000108228 2767 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -0
Col27a1Q5QNQ9 Usp48-205ENSMUST00000105840 5741 ntAPPRIS P1 TSL 5 BASIC15.04■□□□□ -0
Col27a1Q5QNQ9 Lhfp-203ENSMUST00000147139 1932 ntAPPRIS P1 TSL 5 BASIC15.04■□□□□ -0
Col27a1Q5QNQ9 Stap2-201ENSMUST00000043785 1491 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Col27a1Q5QNQ9 Gdpd2-202ENSMUST00000113744 2427 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Col27a1Q5QNQ9 Pebp1-202ENSMUST00000111973 779 ntTSL 3 BASIC15.04■□□□□ -0
Col27a1Q5QNQ9 Gm11478-201ENSMUST00000117851 599 ntBASIC15.04■□□□□ -0
Col27a1Q5QNQ9 1600025M17Rik-202ENSMUST00000151426 547 ntTSL 1 (best) BASIC15.04■□□□□ -0
Col27a1Q5QNQ9 Gm8597-201ENSMUST00000191525 1109 ntBASIC15.04■□□□□ -0
Col27a1Q5QNQ9 Gm42612-201ENSMUST00000197986 623 ntBASIC15.04■□□□□ -0
Col27a1Q5QNQ9 Gm6745-201ENSMUST00000199216 526 ntBASIC15.04■□□□□ -0
Col27a1Q5QNQ9 Gm43170-201ENSMUST00000199827 612 ntBASIC15.04■□□□□ -0
Col27a1Q5QNQ9 Prok2-204ENSMUST00000203738 695 ntTSL 1 (best) BASIC15.04■□□□□ -0
Col27a1Q5QNQ9 Snx24-201ENSMUST00000025417 994 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Col27a1Q5QNQ9 Nudt17-201ENSMUST00000029742 1039 ntTSL 1 (best) BASIC15.04■□□□□ -0
Col27a1Q5QNQ9 Rpl13a-ps1-201ENSMUST00000071866 612 ntAPPRIS P1 BASIC15.04■□□□□ -0
Col27a1Q5QNQ9 Pqlc1-202ENSMUST00000091798 1989 ntAPPRIS P3 TSL 5 BASIC15.04■□□□□ -0
Col27a1Q5QNQ9 Dlx4os-201ENSMUST00000156477 1664 ntTSL 1 (best) BASIC15.04■□□□□ -0
Col27a1Q5QNQ9 Ccdc181-201ENSMUST00000027867 1909 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Col27a1Q5QNQ9 Arhgap23-202ENSMUST00000107601 5450 ntTSL 5 BASIC15.04■□□□□ -0
Col27a1Q5QNQ9 Adamtsl1-201ENSMUST00000048885 1842 ntTSL 5 BASIC15.04■□□□□ -0
Col27a1Q5QNQ9 Dnase2a-201ENSMUST00000003910 1715 ntAPPRIS P2 TSL 1 (best) BASIC15.04■□□□□ -0
Col27a1Q5QNQ9 Pde7b-206ENSMUST00000170265 1380 ntAPPRIS ALT2 TSL 5 BASIC15.04■□□□□ -0
Col27a1Q5QNQ9 Cep83-201ENSMUST00000020212 3639 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Col27a1Q5QNQ9 Snrnp27-202ENSMUST00000113683 1005 ntTSL 1 (best) BASIC15.03■□□□□ -0
Col27a1Q5QNQ9 Lrcol1-202ENSMUST00000185691 764 ntAPPRIS P2 TSL 1 (best) BASIC15.03■□□□□ -0
Col27a1Q5QNQ9 AY702102-202ENSMUST00000194651 1173 ntBASIC15.03■□□□□ -0
Col27a1Q5QNQ9 Oser1-202ENSMUST00000104954 1702 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Col27a1Q5QNQ9 Gpaa1-201ENSMUST00000023221 2107 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Col27a1Q5QNQ9 Cspp1-203ENSMUST00000118263 2162 ntTSL 1 (best) BASIC15.03■□□□□ -0
Col27a1Q5QNQ9 Hnrnpa1-202ENSMUST00000087351 1759 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Col27a1Q5QNQ9 Sctr-202ENSMUST00000189037 1819 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
Col27a1Q5QNQ9 Crem-234ENSMUST00000154470 1996 ntTSL 5 BASIC15.03■□□□□ -0
Col27a1Q5QNQ9 Rps13-ps4-201ENSMUST00000117927 456 ntBASIC15.03■□□□□ -0
Col27a1Q5QNQ9 Rps13-ps5-201ENSMUST00000117939 456 ntBASIC15.03■□□□□ -0
Col27a1Q5QNQ9 Gm15483-201ENSMUST00000120338 456 ntBASIC15.03■□□□□ -0
Col27a1Q5QNQ9 Mcfd2-202ENSMUST00000129616 813 ntAPPRIS P1 TSL 3 BASIC15.03■□□□□ -0
Col27a1Q5QNQ9 Gm13994-201ENSMUST00000137397 513 ntTSL 5 BASIC15.03■□□□□ -0
Col27a1Q5QNQ9 Gm11682-201ENSMUST00000144689 516 ntTSL 3 BASIC15.03■□□□□ -0
Col27a1Q5QNQ9 Mir1938-201ENSMUST00000158746 100 ntBASIC15.03■□□□□ -0
Col27a1Q5QNQ9 Gm18766-201ENSMUST00000189811 808 ntBASIC15.03■□□□□ -0
Col27a1Q5QNQ9 Gm36979-201ENSMUST00000193616 539 ntTSL 5 BASIC15.03■□□□□ -0
Col27a1Q5QNQ9 2610008E11Rik-204ENSMUST00000220220 799 ntTSL 2 BASIC15.03■□□□□ -0
Col27a1Q5QNQ9 Caly-201ENSMUST00000026541 1220 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Col27a1Q5QNQ9 Pabpn1l-201ENSMUST00000093059 1148 ntAPPRIS P2 TSL 1 (best) BASIC15.03■□□□□ -0
Col27a1Q5QNQ9 Pacs2-202ENSMUST00000220541 3101 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
Col27a1Q5QNQ9 Sirt1-201ENSMUST00000020257 3905 ntAPPRIS P3 TSL 1 (best) BASIC15.03■□□□□ -0
Col27a1Q5QNQ9 Umad1-202ENSMUST00000159335 2615 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
Col27a1Q5QNQ9 Gne-202ENSMUST00000102936 2920 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Col27a1Q5QNQ9 Pou3f1-201ENSMUST00000053491 3849 ntAPPRIS P1 BASIC15.03■□□□□ -0
Col27a1Q5QNQ9 Gm6263-201ENSMUST00000120029 1342 ntBASIC15.03■□□□□ -0
Col27a1Q5QNQ9 Coq8b-202ENSMUST00000108378 2276 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Col27a1Q5QNQ9 Nr2f1-201ENSMUST00000091458 3207 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Col27a1Q5QNQ9 Rnf128-201ENSMUST00000113026 2750 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Col27a1Q5QNQ9 Gm16835-201ENSMUST00000140488 2809 ntTSL 1 (best) BASIC15.02■□□□□ -0
Col27a1Q5QNQ9 Slc22a18-202ENSMUST00000105917 1552 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Col27a1Q5QNQ9 Cmss1-201ENSMUST00000114371 930 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Col27a1Q5QNQ9 Mkl2-203ENSMUST00000115809 667 ntTSL 2 BASIC15.02■□□□□ -0
Col27a1Q5QNQ9 Gm9719-201ENSMUST00000162765 543 ntBASIC15.02■□□□□ -0
Col27a1Q5QNQ9 Gm42722-201ENSMUST00000198855 940 ntTSL 3 BASIC15.02■□□□□ -0
Col27a1Q5QNQ9 Klk2-ps-201ENSMUST00000205342 571 ntBASIC15.02■□□□□ -0
Col27a1Q5QNQ9 Isca2-201ENSMUST00000021667 883 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Col27a1Q5QNQ9 Rassf8-202ENSMUST00000058538 1131 ntBASIC15.02■□□□□ -0
Col27a1Q5QNQ9 Ppme1-201ENSMUST00000032963 2772 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
Col27a1Q5QNQ9 Grin2c-202ENSMUST00000106554 4895 ntAPPRIS P1 TSL 5 BASIC15.02□□□□□ -0.01
Col27a1Q5QNQ9 Dlg3-201ENSMUST00000000901 4885 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
Col27a1Q5QNQ9 Klhdc8b-201ENSMUST00000035232 1897 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
Col27a1Q5QNQ9 Zfp691-204ENSMUST00000179290 1721 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
Col27a1Q5QNQ9 Acot1-201ENSMUST00000168120 2272 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
Col27a1Q5QNQ9 Cog2-201ENSMUST00000034460 2825 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
Col27a1Q5QNQ9 Gm14026-201ENSMUST00000120625 1789 ntBASIC15.01□□□□□ -0.01
Col27a1Q5QNQ9 Asf1b-201ENSMUST00000005607 1788 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Col27a1Q5QNQ9 Abhd16b-201ENSMUST00000069649 1775 ntAPPRIS P1 BASIC15.01□□□□□ -0.01
Col27a1Q5QNQ9 E130201H02Rik-201ENSMUST00000123576 851 ntBASIC15.01□□□□□ -0.01
Col27a1Q5QNQ9 Gm15420-201ENSMUST00000133274 382 ntTSL 3 BASIC15.01□□□□□ -0.01
Col27a1Q5QNQ9 2310061I04Rik-204ENSMUST00000148721 1293 ntAPPRIS P1 TSL 5 BASIC15.01□□□□□ -0.01
Col27a1Q5QNQ9 Tnfrsf12a-202ENSMUST00000167059 858 ntTSL 2 BASIC15.01□□□□□ -0.01
Col27a1Q5QNQ9 Gm29542-201ENSMUST00000186876 704 ntTSL 3 BASIC15.01□□□□□ -0.01
Col27a1Q5QNQ9 Tnfrsf12a-201ENSMUST00000024698 963 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Col27a1Q5QNQ9 Calml4-201ENSMUST00000034777 864 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Col27a1Q5QNQ9 Gm36858-201ENSMUST00000194501 2391 ntBASIC15.01□□□□□ -0.01
Col27a1Q5QNQ9 Pi4k2b-201ENSMUST00000031081 3139 ntAPPRIS P3 TSL 1 (best) BASIC15.01□□□□□ -0.01
Col27a1Q5QNQ9 Dhodh-201ENSMUST00000123605 2039 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Col27a1Q5QNQ9 Plppr2-202ENSMUST00000188468 1480 ntAPPRIS ALT2 TSL 5 BASIC15.01□□□□□ -0.01
Col27a1Q5QNQ9 Gm37811-201ENSMUST00000192416 2601 ntBASIC15.01□□□□□ -0.01
Col27a1Q5QNQ9 Hsf5-201ENSMUST00000093956 4158 ntAPPRIS P1 TSL 5 BASIC15.01□□□□□ -0.01
Col27a1Q5QNQ9 Pdgfrl-201ENSMUST00000034004 1548 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Col27a1Q5QNQ9 Ddit4l-201ENSMUST00000053855 2722 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Col27a1Q5QNQ9 Insm1-201ENSMUST00000089257 3100 ntAPPRIS P1 BASIC15.01□□□□□ -0.01
Col27a1Q5QNQ9 Zbtb24-201ENSMUST00000080771 2844 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Col27a1Q5QNQ9 Gm26858-201ENSMUST00000180608 2040 ntTSL 5 BASIC15.01□□□□□ -0.01
Col27a1Q5QNQ9 Gm20482-201ENSMUST00000172746 1644 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
Col27a1Q5QNQ9 Mmd-201ENSMUST00000004050 2677 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Retrieved 100 of 76,532 protein–RNA pairs in 27.5 ms