Protein–RNA interactions for Protein: Q5I043

Usp28, Ubiquitin carboxyl-terminal hydrolase 28, mousemouse

Predictions only

Length 1,051 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp28Q5I043 Asf1b-201ENSMUST00000005607 1788 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Usp28Q5I043 Celf3-204ENSMUST00000197558 2414 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
Usp28Q5I043 Gata4-202ENSMUST00000118022 3374 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.45
Usp28Q5I043 Otol1-201ENSMUST00000053013 2161 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Usp28Q5I043 Slc25a22-201ENSMUST00000019226 2811 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Usp28Q5I043 Cgn-203ENSMUST00000153263 2210 ntTSL 2 BASIC17.89■□□□□ 0.45
Usp28Q5I043 Cnksr2-201ENSMUST00000026750 5738 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Usp28Q5I043 Spint2-202ENSMUST00000108236 1211 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
Usp28Q5I043 Fbxo9-203ENSMUST00000159099 1201 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
Usp28Q5I043 Hint3-203ENSMUST00000161074 875 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Usp28Q5I043 Pthlh-202ENSMUST00000204197 1281 ntAPPRIS P1 TSL 5 BASIC17.89■□□□□ 0.45
Usp28Q5I043 Il17a-201ENSMUST00000027061 1171 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Usp28Q5I043 Hist1h1a-201ENSMUST00000055770 741 ntAPPRIS P1 BASIC17.89■□□□□ 0.45
Usp28Q5I043 Actn3-201ENSMUST00000006626 2880 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Usp28Q5I043 Mbd6-201ENSMUST00000026476 4165 ntAPPRIS P3 TSL 5 BASIC17.89■□□□□ 0.45
Usp28Q5I043 Arhgef11-201ENSMUST00000039476 6776 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Usp28Q5I043 Nhlh2-202ENSMUST00000196324 2647 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Usp28Q5I043 Sec24a-203ENSMUST00000109092 2094 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
Usp28Q5I043 Ccdc71l-201ENSMUST00000172332 4240 ntAPPRIS P1 BASIC17.89■□□□□ 0.45
Usp28Q5I043 P3h1-203ENSMUST00000102662 2977 ntAPPRIS P3 TSL 5 BASIC17.88■□□□□ 0.45
Usp28Q5I043 Vav1-204ENSMUST00000169220 2810 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
Usp28Q5I043 Lonrf3-201ENSMUST00000016383 2911 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Usp28Q5I043 Trmt112-202ENSMUST00000116551 985 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Usp28Q5I043 Zfp629-206ENSMUST00000132524 215 ntTSL 5 BASIC17.88■□□□□ 0.45
Usp28Q5I043 Mgarp-203ENSMUST00000141156 1246 ntAPPRIS ALT2 TSL 2 BASIC17.88■□□□□ 0.45
Usp28Q5I043 Gjb6-201ENSMUST00000039380 2105 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Usp28Q5I043 Gm7367-201ENSMUST00000057611 492 ntBASIC17.88■□□□□ 0.45
Usp28Q5I043 Znhit1-202ENSMUST00000085941 740 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Usp28Q5I043 Fthl17f-201ENSMUST00000097029 847 ntAPPRIS P1 BASIC17.88■□□□□ 0.45
Usp28Q5I043 Letmd1-201ENSMUST00000037001 2579 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Usp28Q5I043 Stox2-208ENSMUST00000211737 4573 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
Usp28Q5I043 Arrb2-203ENSMUST00000102563 1352 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Usp28Q5I043 Ppt1-201ENSMUST00000030412 2381 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Usp28Q5I043 Ppif-201ENSMUST00000022419 1549 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Usp28Q5I043 Plppr5-201ENSMUST00000039564 4670 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Usp28Q5I043 Barhl1-201ENSMUST00000050776 3666 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Usp28Q5I043 Acd-201ENSMUST00000042608 3154 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Usp28Q5I043 Gda-201ENSMUST00000087600 5428 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Usp28Q5I043 Kazn-201ENSMUST00000036476 3843 ntAPPRIS P2 TSL 1 (best) BASIC17.87■□□□□ 0.45
Usp28Q5I043 B020017C02Rik-201ENSMUST00000197444 1688 ntBASIC17.87■□□□□ 0.45
Usp28Q5I043 Rbfox3-203ENSMUST00000103023 2809 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
Usp28Q5I043 1600014C10Rik-208ENSMUST00000179525 2326 ntTSL 2 BASIC17.87■□□□□ 0.45
Usp28Q5I043 Slc41a3-202ENSMUST00000044019 2412 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
Usp28Q5I043 Zswim8-201ENSMUST00000022358 6073 ntAPPRIS P2 TSL 1 (best) BASIC17.87■□□□□ 0.45
Usp28Q5I043 Gm15234-201ENSMUST00000141485 1058 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
Usp28Q5I043 Gm25406-201ENSMUST00000157599 105 ntBASIC17.87■□□□□ 0.45
Usp28Q5I043 Tppp3-202ENSMUST00000176419 719 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Usp28Q5I043 Gm44965-201ENSMUST00000204121 360 ntAPPRIS P1 TSL 3 BASIC17.87■□□□□ 0.45
Usp28Q5I043 Gm45328-201ENSMUST00000210942 917 ntBASIC17.87■□□□□ 0.45
Usp28Q5I043 Icam4-202ENSMUST00000215077 1028 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
Usp28Q5I043 AC156832.2-201ENSMUST00000216217 1295 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
Usp28Q5I043 Snx12-201ENSMUST00000077876 1002 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
Usp28Q5I043 Romo1-201ENSMUST00000088610 569 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Usp28Q5I043 Trmt1-201ENSMUST00000001974 2567 ntAPPRIS P3 TSL 1 (best) BASIC17.87■□□□□ 0.45
Usp28Q5I043 Exo5-204ENSMUST00000177880 1969 ntAPPRIS P1 TSL 2 BASIC17.87■□□□□ 0.45
Usp28Q5I043 Exo5-201ENSMUST00000030375 1996 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Usp28Q5I043 Fam120c-201ENSMUST00000073364 5463 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Usp28Q5I043 Dffb-201ENSMUST00000030893 2093 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Usp28Q5I043 Ssfa2-201ENSMUST00000111784 4999 ntAPPRIS ALT2 TSL 5 BASIC17.87■□□□□ 0.45
Usp28Q5I043 Myrf-202ENSMUST00000186056 3636 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
Usp28Q5I043 Col18a1-202ENSMUST00000081654 5063 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
Usp28Q5I043 Cstf2-203ENSMUST00000113287 3661 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
Usp28Q5I043 Rbm42-202ENSMUST00000108141 1526 ntAPPRIS ALT2 TSL 5 BASIC17.87■□□□□ 0.45
Usp28Q5I043 Psmd8-203ENSMUST00000186182 1512 ntAPPRIS P2 TSL 1 (best) BASIC17.87■□□□□ 0.45
Usp28Q5I043 Cdk16-201ENSMUST00000033380 3120 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Usp28Q5I043 Ghrhr-201ENSMUST00000063578 1550 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Usp28Q5I043 Fam219a-201ENSMUST00000108049 3296 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
Usp28Q5I043 Zfp202-203ENSMUST00000168832 3329 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
Usp28Q5I043 Samm50-201ENSMUST00000023071 1673 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Usp28Q5I043 Pde4d-207ENSMUST00000120664 4207 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
Usp28Q5I043 Cstf2-201ENSMUST00000033609 4502 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Usp28Q5I043 Gm26669-201ENSMUST00000181323 1808 ntTSL 5 BASIC17.86■□□□□ 0.45
Usp28Q5I043 Tubg1-201ENSMUST00000043680 1802 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Usp28Q5I043 Agfg1-201ENSMUST00000063380 2896 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
Usp28Q5I043 9630013D21Rik-204ENSMUST00000156790 3096 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
Usp28Q5I043 Vldlr-202ENSMUST00000047645 3260 ntTSL 5 BASIC17.86■□□□□ 0.45
Usp28Q5I043 Cpxm1-201ENSMUST00000028897 2366 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Usp28Q5I043 Sbno2-204ENSMUST00000217972 2462 ntTSL 2 BASIC17.86■□□□□ 0.45
Usp28Q5I043 2310009B15Rik-201ENSMUST00000112025 565 ntAPPRIS P1 TSL 2 BASIC17.86■□□□□ 0.45
Usp28Q5I043 Tmsb10-202ENSMUST00000114049 690 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Usp28Q5I043 Gm13312-201ENSMUST00000119631 718 ntBASIC17.86■□□□□ 0.45
Usp28Q5I043 Gm1818-201ENSMUST00000169406 1184 ntBASIC17.86■□□□□ 0.45
Usp28Q5I043 Eloc-203ENSMUST00000185771 742 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
Usp28Q5I043 Msh3-205ENSMUST00000187424 666 ntTSL 2 BASIC17.86■□□□□ 0.45
Usp28Q5I043 Hint1-201ENSMUST00000020504 636 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Usp28Q5I043 Lmo1-203ENSMUST00000208136 772 ntTSL 2 BASIC17.86■□□□□ 0.45
Usp28Q5I043 Gmnn-201ENSMUST00000006898 1127 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Usp28Q5I043 C1qbp-201ENSMUST00000078528 1175 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Usp28Q5I043 Bnipl-201ENSMUST00000098871 1414 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
Usp28Q5I043 Sigirr-203ENSMUST00000209294 1612 ntAPPRIS P2 TSL 1 (best) BASIC17.86■□□□□ 0.45
Usp28Q5I043 Dhx16-201ENSMUST00000025292 3351 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Usp28Q5I043 6430573F11Rik-205ENSMUST00000171777 1825 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Usp28Q5I043 Zscan2-201ENSMUST00000044115 2310 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Usp28Q5I043 Ube2d3-212ENSMUST00000197859 3833 ntAPPRIS P2 TSL 1 (best) BASIC17.85■□□□□ 0.45
Usp28Q5I043 Dclk2-201ENSMUST00000029719 4012 ntAPPRIS P3 TSL 1 (best) BASIC17.85■□□□□ 0.45
Usp28Q5I043 Tmem132c-201ENSMUST00000119026 5134 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Usp28Q5I043 Cldn7-203ENSMUST00000108596 664 ntTSL 3 BASIC17.85■□□□□ 0.45
Usp28Q5I043 Fbln1-202ENSMUST00000109432 2273 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
Usp28Q5I043 Ints10-203ENSMUST00000110241 2322 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
Usp28Q5I043 Gm11729-201ENSMUST00000124901 713 ntTSL 3 BASIC17.85■□□□□ 0.45
Retrieved 100 of 76,532 protein–RNA pairs in 51.4 ms