Protein–RNA interactions for Protein: Q07563

Col17a1, Collagen alpha-1(XVII) chain, mousemouse

Predictions only

Length 1,470 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col17a1Q07563 Gpr31b-201ENSMUST00000091648 960 ntAPPRIS P1 BASIC24.02■■□□□ 1.44
Col17a1Q07563 Mtmr14-201ENSMUST00000113146 2676 ntAPPRIS P2 TSL 1 (best) BASIC24.02■■□□□ 1.44
Col17a1Q07563 C1ql3-201ENSMUST00000061545 2535 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
Col17a1Q07563 A730089K16Rik-201ENSMUST00000194526 2427 ntBASIC24.02■■□□□ 1.44
Col17a1Q07563 Larp6-201ENSMUST00000038407 2440 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
Col17a1Q07563 Slfnl1-201ENSMUST00000062990 1762 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
Col17a1Q07563 Smarcd2-201ENSMUST00000021052 2747 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
Col17a1Q07563 Slc16a10-202ENSMUST00000213488 2325 ntTSL 1 (best) BASIC24.01■■□□□ 1.43
Col17a1Q07563 Nectin3-201ENSMUST00000023334 3062 ntAPPRIS P4 TSL 1 (best) BASIC24.01■■□□□ 1.43
Col17a1Q07563 Htr2c-203ENSMUST00000112831 809 ntTSL 3 BASIC24.01■■□□□ 1.43
Col17a1Q07563 Gm11682-201ENSMUST00000144689 516 ntTSL 3 BASIC24.01■■□□□ 1.43
Col17a1Q07563 Ly6g5b-202ENSMUST00000172854 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC24.01■■□□□ 1.43
Col17a1Q07563 Hspb9-201ENSMUST00000017976 652 ntAPPRIS ALT2 BASIC24.01■■□□□ 1.43
Col17a1Q07563 Lsmem2-201ENSMUST00000191791 369 ntTSL 3 BASIC24.01■■□□□ 1.43
Col17a1Q07563 Dupd1-202ENSMUST00000224735 548 ntBASIC24.01■■□□□ 1.43
Col17a1Q07563 Gspt1-201ENSMUST00000080030 2898 ntAPPRIS P3 TSL 1 (best) BASIC24.01■■□□□ 1.43
Col17a1Q07563 Fn3k-202ENSMUST00000092302 1803 ntTSL 1 (best) BASIC24.01■■□□□ 1.43
Col17a1Q07563 AL691505.1-201ENSMUST00000219965 1618 ntTSL 5 BASIC24.01■■□□□ 1.43
Col17a1Q07563 Rasgrp2-224ENSMUST00000167240 2192 ntAPPRIS P1 TSL 5 BASIC24.01■■□□□ 1.43
Col17a1Q07563 Fam69a-201ENSMUST00000031198 2721 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
Col17a1Q07563 Ttll3-206ENSMUST00000204026 1472 ntTSL 1 (best) BASIC24.01■■□□□ 1.43
Col17a1Q07563 Tnfsf14-201ENSMUST00000005976 1859 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
Col17a1Q07563 Lgi2-201ENSMUST00000039750 6456 ntAPPRIS P3 TSL 1 (best) BASIC24■■□□□ 1.43
Col17a1Q07563 Fuom-203ENSMUST00000121115 872 ntTSL 1 (best) BASIC24■■□□□ 1.43
Col17a1Q07563 Slc2a9-207ENSMUST00000143758 1296 ntTSL 1 (best) BASIC24■■□□□ 1.43
Col17a1Q07563 Nudt17-202ENSMUST00000171249 1110 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
Col17a1Q07563 Gm5108-201ENSMUST00000177891 543 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
Col17a1Q07563 Cox6b2-204ENSMUST00000182173 391 ntTSL 2 BASIC24■■□□□ 1.43
Col17a1Q07563 Gm27243-201ENSMUST00000183964 521 ntBASIC24■■□□□ 1.43
Col17a1Q07563 Spag7-201ENSMUST00000018431 1159 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
Col17a1Q07563 Gm36634-201ENSMUST00000218356 1259 ntTSL 3 BASIC24■■□□□ 1.43
Col17a1Q07563 Tmem86b-201ENSMUST00000055085 1222 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
Col17a1Q07563 Zic4-209ENSMUST00000173933 1764 ntAPPRIS P1 TSL 5 BASIC24■■□□□ 1.43
Col17a1Q07563 Tulp1-202ENSMUST00000114794 1738 ntTSL 1 (best) BASIC24■■□□□ 1.43
Col17a1Q07563 Gm16897-201ENSMUST00000180780 2492 ntTSL 1 (best) BASIC24■■□□□ 1.43
Col17a1Q07563 Snrpa-202ENSMUST00000122202 1336 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
Col17a1Q07563 Lsm12-202ENSMUST00000107156 2015 ntTSL 5 BASIC24■■□□□ 1.43
Col17a1Q07563 Rhox2g-201ENSMUST00000115169 795 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
Col17a1Q07563 Gm5566-201ENSMUST00000116118 459 ntBASIC24■■□□□ 1.43
Col17a1Q07563 Tmem205-202ENSMUST00000178988 862 ntAPPRIS P1 TSL 2 BASIC24■■□□□ 1.43
Col17a1Q07563 Gm27920-201ENSMUST00000183953 96 ntBASIC24■■□□□ 1.43
Col17a1Q07563 Gm28198-201ENSMUST00000190938 471 ntTSL 3 BASIC24■■□□□ 1.43
Col17a1Q07563 Gm18753-201ENSMUST00000201000 566 ntBASIC24■■□□□ 1.43
Col17a1Q07563 Hist1h3f-201ENSMUST00000075558 1261 ntAPPRIS P1 BASIC24■■□□□ 1.43
Col17a1Q07563 Tial1-201ENSMUST00000033135 1580 ntAPPRIS ALT1 TSL 1 (best) BASIC23.99■■□□□ 1.43
Col17a1Q07563 Hdgfl3-201ENSMUST00000026094 2865 ntAPPRIS ALT1 TSL 1 (best) BASIC23.99■■□□□ 1.43
Col17a1Q07563 Ssc4d-203ENSMUST00000111152 2745 ntAPPRIS P1 TSL 5 BASIC23.99■■□□□ 1.43
Col17a1Q07563 Nr1i3-203ENSMUST00000111328 1359 ntAPPRIS ALT2 TSL 1 (best) BASIC23.99■■□□□ 1.43
Col17a1Q07563 Tpm2-201ENSMUST00000030184 2175 ntTSL 5 BASIC23.99■■□□□ 1.43
Col17a1Q07563 Mrps10-202ENSMUST00000119841 1113 ntTSL 1 (best) BASIC23.99■■□□□ 1.43
Col17a1Q07563 Gm28760-201ENSMUST00000185995 736 ntBASIC23.99■■□□□ 1.43
Col17a1Q07563 H2-Bl-210ENSMUST00000195833 829 ntTSL 1 (best) BASIC23.99■■□□□ 1.43
Col17a1Q07563 Gm42196-201ENSMUST00000209618 730 ntTSL 5 BASIC23.99■■□□□ 1.43
Col17a1Q07563 Rad51d-202ENSMUST00000021033 1201 ntTSL 1 (best) BASIC23.99■■□□□ 1.43
Col17a1Q07563 AC144543.1-201ENSMUST00000221840 1064 ntTSL 1 (best) BASIC23.99■■□□□ 1.43
Col17a1Q07563 Oit1-201ENSMUST00000022269 1253 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
Col17a1Q07563 Olfr373-201ENSMUST00000074540 945 ntAPPRIS P1 BASIC23.99■■□□□ 1.43
Col17a1Q07563 Stra8-201ENSMUST00000031876 1803 ntAPPRIS P2 TSL 1 (best) BASIC23.99■■□□□ 1.43
Col17a1Q07563 Kcnip2-209ENSMUST00000162528 2395 ntTSL 1 (best) BASIC23.99■■□□□ 1.43
Col17a1Q07563 Fam109a-201ENSMUST00000056654 2368 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
Col17a1Q07563 Gm5828-201ENSMUST00000071842 1860 ntBASIC23.98■■□□□ 1.43
Col17a1Q07563 Med14-201ENSMUST00000076016 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC23.98■■□□□ 1.43
Col17a1Q07563 Tyw5-209ENSMUST00000162686 1847 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
Col17a1Q07563 C330018A13Rik-201ENSMUST00000127792 1599 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
Col17a1Q07563 Cnn2-201ENSMUST00000004784 2460 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
Col17a1Q07563 Lrrc57-202ENSMUST00000102497 1962 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
Col17a1Q07563 Ldha-ps-201ENSMUST00000119390 995 ntBASIC23.98■■□□□ 1.43
Col17a1Q07563 Pdlim2-204ENSMUST00000127836 920 ntTSL 5 BASIC23.98■■□□□ 1.43
Col17a1Q07563 Gm11791-201ENSMUST00000139327 336 ntTSL 3 BASIC23.98■■□□□ 1.43
Col17a1Q07563 Gm3436-201ENSMUST00000179930 840 ntBASIC23.98■■□□□ 1.43
Col17a1Q07563 Ccs-201ENSMUST00000037246 1057 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
Col17a1Q07563 A930012L18Rik-201ENSMUST00000181094 2364 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
Col17a1Q07563 Snip1-201ENSMUST00000052183 2345 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
Col17a1Q07563 Gm13112-201ENSMUST00000138795 1258 ntTSL 1 (best) BASIC23.97■■□□□ 1.43
Col17a1Q07563 Gm28911-201ENSMUST00000188837 117 ntBASIC23.97■■□□□ 1.43
Col17a1Q07563 Gm37714-201ENSMUST00000194742 342 ntBASIC23.97■■□□□ 1.43
Col17a1Q07563 Ppp3ca-202ENSMUST00000070198 4758 ntTSL 1 (best) BASIC23.97■■□□□ 1.43
Col17a1Q07563 Mrps27-201ENSMUST00000052249 1849 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
Col17a1Q07563 Krt74-201ENSMUST00000088018 1648 ntAPPRIS P1 TSL 2 BASIC23.97■■□□□ 1.43
Col17a1Q07563 Cfap69-205ENSMUST00000135252 2188 ntAPPRIS ALT2 TSL 1 (best) BASIC23.97■■□□□ 1.43
Col17a1Q07563 Cbx6-201ENSMUST00000109623 996 ntTSL 5 BASIC23.96■■□□□ 1.43
Col17a1Q07563 Gm4857-201ENSMUST00000192718 785 ntBASIC23.96■■□□□ 1.43
Col17a1Q07563 AC158529.1-201ENSMUST00000223618 239 ntBASIC23.96■■□□□ 1.43
Col17a1Q07563 Vps25-202ENSMUST00000042477 1106 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
Col17a1Q07563 Chtf8-206ENSMUST00000177068 2931 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
Col17a1Q07563 Mzt1-201ENSMUST00000042662 2240 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
Col17a1Q07563 Relb-201ENSMUST00000049912 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC23.96■■□□□ 1.43
Col17a1Q07563 Spi1-201ENSMUST00000002180 2034 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
Col17a1Q07563 Ube2w-201ENSMUST00000117146 2181 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
Col17a1Q07563 Pmvk-202ENSMUST00000107410 652 ntTSL 5 BASIC23.95■■□□□ 1.42
Col17a1Q07563 Leng8-202ENSMUST00000117274 874 ntTSL 1 (best) BASIC23.95■■□□□ 1.42
Col17a1Q07563 Gm12199-201ENSMUST00000137567 517 ntTSL 3 BASIC23.95■■□□□ 1.42
Col17a1Q07563 Dleu2-205ENSMUST00000182325 463 ntTSL 1 (best) BASIC23.95■■□□□ 1.42
Col17a1Q07563 Dleu2-208ENSMUST00000182768 1442 ntTSL 1 (best) BASIC23.95■■□□□ 1.42
Col17a1Q07563 Dleu2-212ENSMUST00000183079 535 ntTSL 3 BASIC23.95■■□□□ 1.42
Col17a1Q07563 1700113H08Rik-202ENSMUST00000189456 974 ntTSL 5 BASIC23.95■■□□□ 1.42
Col17a1Q07563 AC131104.1-201ENSMUST00000222118 1739 ntTSL 5 BASIC23.95■■□□□ 1.42
Col17a1Q07563 AC090659.2-201ENSMUST00000225378 1186 ntBASIC23.95■■□□□ 1.42
Col17a1Q07563 Gm9797-201ENSMUST00000052902 613 ntBASIC23.95■■□□□ 1.42
Col17a1Q07563 Olfr1412-201ENSMUST00000062964 966 ntAPPRIS P1 BASIC23.95■■□□□ 1.42
Retrieved 100 of 76,532 protein–RNA pairs in 82.5 ms