Protein–RNA interactions for Protein: P48381

Rfx3, Transcription factor RFX3, mousemouse

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx3P48381 Cltb-201ENSMUST00000049575 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Rfx3P48381 Hist1h2ad-201ENSMUST00000090776 572 ntAPPRIS P1 BASIC14.26□□□□□ -0.13
Rfx3P48381 D430001F17Rik-201ENSMUST00000141344 1858 ntTSL 5 BASIC14.26□□□□□ -0.13
Rfx3P48381 AC163637.1-201ENSMUST00000215491 1894 ntBASIC14.26□□□□□ -0.13
Rfx3P48381 Eda-206ENSMUST00000113779 4955 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
Rfx3P48381 Lmnb1-201ENSMUST00000025486 2843 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Rfx3P48381 Gypc-203ENSMUST00000174459 2180 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
Rfx3P48381 Cdcp1-201ENSMUST00000039229 5310 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Rfx3P48381 Rassf7-208ENSMUST00000209500 1560 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
Rfx3P48381 Akirin1-201ENSMUST00000102636 3052 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Rfx3P48381 Hykk-201ENSMUST00000039742 5110 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Rfx3P48381 Plpp7-201ENSMUST00000057423 1947 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Rfx3P48381 Zfp689-202ENSMUST00000106299 1417 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Rfx3P48381 Idh1-201ENSMUST00000097709 2302 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Rfx3P48381 Tssc4-206ENSMUST00000177841 1364 ntAPPRIS P1 TSL 2 BASIC14.25□□□□□ -0.13
Rfx3P48381 Lrrc32-203ENSMUST00000205956 4576 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
Rfx3P48381 Kdm7a-201ENSMUST00000002305 9566 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Rfx3P48381 B3galt6-201ENSMUST00000052185 3184 ntAPPRIS P1 BASIC14.25□□□□□ -0.13
Rfx3P48381 Xpo6-201ENSMUST00000009344 4455 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
Rfx3P48381 Tmem248-202ENSMUST00000111298 3570 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Rfx3P48381 Sik2-201ENSMUST00000041375 3552 ntAPPRIS P2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Rfx3P48381 Gm10501-201ENSMUST00000151136 2200 ntTSL 2 BASIC14.25□□□□□ -0.13
Rfx3P48381 Pcdha7-201ENSMUST00000192631 5337 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Rfx3P48381 Phospho2-202ENSMUST00000112266 2194 ntAPPRIS P1 TSL 3 BASIC14.25□□□□□ -0.13
Rfx3P48381 Tom1l2-201ENSMUST00000064019 2151 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Rfx3P48381 Col13a1-203ENSMUST00000105452 3037 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
Rfx3P48381 Aldh3a1-201ENSMUST00000019246 1729 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Rfx3P48381 Ccnd3-ps-201ENSMUST00000117963 881 ntBASIC14.25□□□□□ -0.13
Rfx3P48381 Has3-202ENSMUST00000175987 1154 ntTSL 5 BASIC14.25□□□□□ -0.13
Rfx3P48381 Cenps-201ENSMUST00000030813 1110 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Rfx3P48381 Sftpb-201ENSMUST00000070437 1131 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
Rfx3P48381 Stat3-207ENSMUST00000138438 2506 ntTSL 5 BASIC14.25□□□□□ -0.13
Rfx3P48381 Smarca5-201ENSMUST00000043359 6113 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Rfx3P48381 Slc22a7-201ENSMUST00000087012 2007 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Rfx3P48381 Tfap2b-202ENSMUST00000064976 1946 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Rfx3P48381 Irf7-202ENSMUST00000097952 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Rfx3P48381 Arhgef10l-201ENSMUST00000039204 4493 ntAPPRIS P4 TSL 1 (best) BASIC14.24□□□□□ -0.13
Rfx3P48381 Gm9774-202ENSMUST00000192538 1392 ntAPPRIS P1 BASIC14.24□□□□□ -0.13
Rfx3P48381 Dnajc1-202ENSMUST00000091418 5070 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Rfx3P48381 Des-201ENSMUST00000027409 3028 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Rfx3P48381 Adam9-204ENSMUST00000208247 4044 ntAPPRIS P2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Rfx3P48381 Gm11860-201ENSMUST00000122346 1010 ntBASIC14.24□□□□□ -0.13
Rfx3P48381 Gm9013-201ENSMUST00000132939 882 ntBASIC14.24□□□□□ -0.13
Rfx3P48381 Gm19345-201ENSMUST00000172815 993 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Rfx3P48381 Gm38186-201ENSMUST00000192574 449 ntTSL 3 BASIC14.24□□□□□ -0.13
Rfx3P48381 Sec61b-201ENSMUST00000065678 564 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Rfx3P48381 Snx12-201ENSMUST00000077876 1002 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Rfx3P48381 Myoz1-201ENSMUST00000090469 1289 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Rfx3P48381 H2-K1-205ENSMUST00000172912 1570 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Rfx3P48381 Plekha4-207ENSMUST00000211227 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Rfx3P48381 Adgrd2-ps-201ENSMUST00000118797 2662 ntBASIC14.24□□□□□ -0.13
Rfx3P48381 Sike1-201ENSMUST00000029447 7375 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Rfx3P48381 E330009J07Rik-202ENSMUST00000101492 6742 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Rfx3P48381 Fbxo31-201ENSMUST00000059018 4358 ntAPPRIS P2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Rfx3P48381 Gm13446-201ENSMUST00000124555 2033 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Rfx3P48381 Fam178b-202ENSMUST00000170295 2286 ntAPPRIS ALT2 TSL 5 BASIC14.24□□□□□ -0.13
Rfx3P48381 App-207ENSMUST00000227737 2827 ntBASIC14.23□□□□□ -0.13
Rfx3P48381 Anks1b-202ENSMUST00000099366 2549 ntTSL 5 BASIC14.23□□□□□ -0.13
Rfx3P48381 Mon1b-201ENSMUST00000035777 4998 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Rfx3P48381 Pde4b-208ENSMUST00000106911 3020 ntAPPRIS ALT1 TSL 5 BASIC14.23□□□□□ -0.13
Rfx3P48381 Slc45a4-204ENSMUST00000132607 2457 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Rfx3P48381 Smox-203ENSMUST00000110180 1617 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Rfx3P48381 Tnip2-203ENSMUST00000114359 1642 ntTSL 5 BASIC14.23□□□□□ -0.13
Rfx3P48381 Clec16a-204ENSMUST00000115824 6244 ntAPPRIS ALT2 TSL 5 BASIC14.23□□□□□ -0.13
Rfx3P48381 Clec16a-202ENSMUST00000066345 6244 ntAPPRIS P3 TSL 5 BASIC14.23□□□□□ -0.13
Rfx3P48381 Six4-201ENSMUST00000043208 6402 ntAPPRIS P2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Rfx3P48381 Kdm6b-201ENSMUST00000094077 6654 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
Rfx3P48381 Nagpa-201ENSMUST00000023911 2143 ntAPPRIS P2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Rfx3P48381 Derl3-201ENSMUST00000009236 1321 ntAPPRIS P2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Rfx3P48381 Smpd5-202ENSMUST00000163991 1823 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Rfx3P48381 Gm10052-201ENSMUST00000168019 960 ntBASIC14.23□□□□□ -0.13
Rfx3P48381 Gm26644-201ENSMUST00000181365 958 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Rfx3P48381 4930505N22Rik-201ENSMUST00000181820 945 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Rfx3P48381 4732471J01Rik-202ENSMUST00000205787 991 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Rfx3P48381 Wdr74-202ENSMUST00000210512 1078 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Rfx3P48381 Gm7729-201ENSMUST00000050143 801 ntBASIC14.23□□□□□ -0.13
Rfx3P48381 Nt5c1a-201ENSMUST00000068262 1220 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Rfx3P48381 Ewsr1-204ENSMUST00000093365 1290 ntTSL 5 BASIC14.23□□□□□ -0.13
Rfx3P48381 Matn1-201ENSMUST00000102576 2001 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Rfx3P48381 Kif12-201ENSMUST00000030042 2250 ntAPPRIS P2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Rfx3P48381 Trpc3-201ENSMUST00000029271 3694 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Rfx3P48381 Rubcn-201ENSMUST00000040986 5257 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
Rfx3P48381 Ppp1r37-201ENSMUST00000058444 3816 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Rfx3P48381 Arpp19-201ENSMUST00000007800 4046 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Rfx3P48381 Cpeb3-212ENSMUST00000154376 5671 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
Rfx3P48381 Tpcn1-201ENSMUST00000046426 4712 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Rfx3P48381 Tor1aip2-205ENSMUST00000111757 6118 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Rfx3P48381 Siglece-201ENSMUST00000032667 1849 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Rfx3P48381 Trim11-201ENSMUST00000093061 2251 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Rfx3P48381 Men1-204ENSMUST00000113500 2742 ntAPPRIS P2 TSL 5 BASIC14.22□□□□□ -0.13
Rfx3P48381 Btbd3-202ENSMUST00000091556 4657 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Rfx3P48381 Isoc2a-201ENSMUST00000125249 2244 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Rfx3P48381 Slc39a1-201ENSMUST00000015467 2364 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Rfx3P48381 Atf4-201ENSMUST00000109605 1724 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Rfx3P48381 Cidec-202ENSMUST00000113089 1720 ntAPPRIS P2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Rfx3P48381 Mir770-201ENSMUST00000103252 94 ntBASIC14.22□□□□□ -0.13
Rfx3P48381 Tlcd2-202ENSMUST00000108435 1112 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Rfx3P48381 Smim1-205ENSMUST00000131325 842 ntTSL 5 BASIC14.22□□□□□ -0.13
Rfx3P48381 Gm20422-202ENSMUST00000149782 956 ntTSL 2 BASIC14.22□□□□□ -0.13
Rfx3P48381 Kiss1r-202ENSMUST00000219745 979 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Retrieved 100 of 76,532 protein–RNA pairs in 25.1 ms