Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 Gm45351-201ENSMUST00000210683 2545 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
Rfx1P48377 Gm43598-201ENSMUST00000202482 2479 ntBASIC18.85■□□□□ 0.61
Rfx1P48377 6430573F11Rik-205ENSMUST00000171777 1825 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Rfx1P48377 Celf3-204ENSMUST00000197558 2414 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
Rfx1P48377 Vav1-204ENSMUST00000169220 2810 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
Rfx1P48377 Gm45133-201ENSMUST00000207548 2773 ntBASIC18.85■□□□□ 0.61
Rfx1P48377 AC174678.1-201ENSMUST00000228007 2749 ntBASIC18.85■□□□□ 0.61
Rfx1P48377 Vill-207ENSMUST00000141185 1645 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
Rfx1P48377 E530011L22Rik-201ENSMUST00000181325 5282 ntBASIC18.85■□□□□ 0.61
Rfx1P48377 Cyp21a1-201ENSMUST00000025223 2058 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Rfx1P48377 Nlrx1-203ENSMUST00000169651 3621 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Rfx1P48377 Pcbp4-201ENSMUST00000024260 2035 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Rfx1P48377 Evpl-201ENSMUST00000037007 6384 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
Rfx1P48377 Slc35e2-201ENSMUST00000043829 2910 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Rfx1P48377 Flywch1-202ENSMUST00000086325 2443 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Rfx1P48377 Pdlim7-206ENSMUST00000131306 1915 ntTSL 2 BASIC18.84■□□□□ 0.61
Rfx1P48377 Muc3a-201ENSMUST00000179412 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
Rfx1P48377 Gm31774-201ENSMUST00000212910 1366 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Rfx1P48377 Tbx3-202ENSMUST00000079719 4982 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Rfx1P48377 Sox17-201ENSMUST00000027035 3127 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Rfx1P48377 Fzd6-202ENSMUST00000179165 4325 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Rfx1P48377 Myh14-204ENSMUST00000207775 6499 ntAPPRIS ALT2 TSL 5 BASIC18.84■□□□□ 0.61
Rfx1P48377 Sytl1-202ENSMUST00000105908 1730 ntTSL 5 BASIC18.84■□□□□ 0.61
Rfx1P48377 Snx11-201ENSMUST00000021246 2551 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Rfx1P48377 Ern1-203ENSMUST00000106800 654 ntTSL 3 BASIC18.84■□□□□ 0.61
Rfx1P48377 Gm26039-201ENSMUST00000158152 144 ntBASIC18.84■□□□□ 0.61
Rfx1P48377 D330020A13Rik-201ENSMUST00000181956 1069 ntAPPRIS P1 BASIC18.84■□□□□ 0.61
Rfx1P48377 Gm45894-202ENSMUST00000212728 1097 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Rfx1P48377 Lce1m-201ENSMUST00000029520 874 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Rfx1P48377 Sox6os-201ENSMUST00000032900 420 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Rfx1P48377 Akip1-201ENSMUST00000033335 1028 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Rfx1P48377 Zfp422-203ENSMUST00000112880 2523 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Rfx1P48377 Atg9a-208ENSMUST00000189702 4110 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
Rfx1P48377 Fam219a-201ENSMUST00000108049 3296 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Rfx1P48377 Tada3-201ENSMUST00000032410 2848 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Rfx1P48377 Ccdc154-202ENSMUST00000182292 1989 ntAPPRIS ALT2 TSL 5 BASIC18.84■□□□□ 0.61
Rfx1P48377 Rfx5-207ENSMUST00000137088 4333 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
Rfx1P48377 Neto1-201ENSMUST00000058829 3531 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Rfx1P48377 Nxnl1-202ENSMUST00000163659 2730 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
Rfx1P48377 Fscn1-201ENSMUST00000031565 2675 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Rfx1P48377 Gm42743-201ENSMUST00000051089 1511 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Rfx1P48377 Chd1l-201ENSMUST00000029730 3008 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Rfx1P48377 Tbcb-201ENSMUST00000006254 1416 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Rfx1P48377 Haghl-201ENSMUST00000077938 1405 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Rfx1P48377 Senp1-204ENSMUST00000180657 3806 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.61
Rfx1P48377 Cnot10-206ENSMUST00000216785 1723 ntTSL 5 BASIC18.83■□□□□ 0.61
Rfx1P48377 Slc6a11-201ENSMUST00000032451 4132 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Rfx1P48377 Fndc11-201ENSMUST00000050026 1387 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
Rfx1P48377 Psme2-208ENSMUST00000161807 962 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Rfx1P48377 Znhit2-201ENSMUST00000162726 1281 ntAPPRIS P1 BASIC18.83■□□□□ 0.6
Rfx1P48377 Dleu2-210ENSMUST00000183054 722 ntTSL 5 BASIC18.83■□□□□ 0.6
Rfx1P48377 BC048679-203ENSMUST00000207871 567 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
Rfx1P48377 Gm19935-201ENSMUST00000209208 979 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Rfx1P48377 Iscu-201ENSMUST00000026937 957 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Rfx1P48377 Olfr317-201ENSMUST00000075607 1128 ntAPPRIS P1 BASIC18.83■□□□□ 0.6
Rfx1P48377 Itpripl1-201ENSMUST00000110386 1898 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Rfx1P48377 Fam69c-201ENSMUST00000052501 2153 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Rfx1P48377 Mmp28-203ENSMUST00000108137 2451 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
Rfx1P48377 Phkg2-202ENSMUST00000121004 1840 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.6
Rfx1P48377 Nr3c2-203ENSMUST00000109912 5675 ntAPPRIS P2 TSL 1 (best) BASIC18.83■□□□□ 0.6
Rfx1P48377 Fbxo30-202ENSMUST00000129456 5060 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Rfx1P48377 Olah-202ENSMUST00000115087 1479 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Rfx1P48377 Hps1-201ENSMUST00000026194 2647 ntAPPRIS P3 TSL 5 BASIC18.83■□□□□ 0.6
Rfx1P48377 Msl2-201ENSMUST00000085177 4889 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Rfx1P48377 Pofut2-201ENSMUST00000020493 2290 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Rfx1P48377 Pde4a-201ENSMUST00000003395 2524 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Rfx1P48377 Efcab14-204ENSMUST00000106525 2792 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
Rfx1P48377 Senp6-202ENSMUST00000164859 3853 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
Rfx1P48377 A330040F15Rik-202ENSMUST00000224046 1918 ntBASIC18.82■□□□□ 0.6
Rfx1P48377 Scara3-201ENSMUST00000042046 3597 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Rfx1P48377 Mamstr-201ENSMUST00000148532 1606 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Rfx1P48377 Plch2-212ENSMUST00000186598 2119 ntTSL 5 BASIC18.82■□□□□ 0.6
Rfx1P48377 Tbc1d1-203ENSMUST00000119756 4760 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
Rfx1P48377 Bdkrb1-202ENSMUST00000182899 1313 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
Rfx1P48377 Bdkrb1-201ENSMUST00000041229 1338 ntAPPRIS P1 BASIC18.82■□□□□ 0.6
Rfx1P48377 Gpr135-201ENSMUST00000050649 3150 ntAPPRIS P1 BASIC18.82■□□□□ 0.6
Rfx1P48377 Gm9889-202ENSMUST00000206983 1577 ntBASIC18.82■□□□□ 0.6
Rfx1P48377 Abl1-201ENSMUST00000028190 5794 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
Rfx1P48377 1600014C10Rik-208ENSMUST00000179525 2326 ntTSL 2 BASIC18.82■□□□□ 0.6
Rfx1P48377 Rpl18-ps2-201ENSMUST00000118863 567 ntBASIC18.82■□□□□ 0.6
Rfx1P48377 Gm13436-201ENSMUST00000120418 567 ntBASIC18.82■□□□□ 0.6
Rfx1P48377 2210408F21Rik-211ENSMUST00000151800 750 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Rfx1P48377 Fbxo6-208ENSMUST00000168503 1240 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
Rfx1P48377 Ly6h-202ENSMUST00000065417 985 ntAPPRIS ALT1 TSL 2 BASIC18.82■□□□□ 0.6
Rfx1P48377 Rpl27-201ENSMUST00000077856 614 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Rfx1P48377 Gm10812-201ENSMUST00000099864 546 ntBASIC18.82■□□□□ 0.6
Rfx1P48377 Rbm26-203ENSMUST00000163499 4212 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Rfx1P48377 Flrt2-202ENSMUST00000110117 3223 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Rfx1P48377 Sigirr-201ENSMUST00000097958 1990 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
Rfx1P48377 Pcbp3-206ENSMUST00000168465 1748 ntAPPRIS P3 TSL 5 BASIC18.82■□□□□ 0.6
Rfx1P48377 Gstm4-201ENSMUST00000029489 1707 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Rfx1P48377 Agfg1-201ENSMUST00000063380 2896 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Rfx1P48377 Gid8-201ENSMUST00000029090 1655 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Rfx1P48377 Micall2-201ENSMUST00000044642 3346 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Rfx1P48377 Dohh-201ENSMUST00000072751 1444 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Rfx1P48377 Cdkl3-201ENSMUST00000063303 2765 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
Rfx1P48377 4833422C13Rik-201ENSMUST00000099331 2083 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Rfx1P48377 Sept6-203ENSMUST00000115239 1845 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Rfx1P48377 Ubash3b-201ENSMUST00000044155 6354 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Rfx1P48377 Rrp15-201ENSMUST00000001339 1321 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Retrieved 100 of 76,532 protein–RNA pairs in 49.5 ms