Protein–RNA interactions for Protein: P43241

Cdx2, Homeobox protein CDX-2, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx2P43241 Bean1-204ENSMUST00000171018 3386 ntAPPRIS P4 TSL 1 (best) BASIC14.91□□□□□ -0.02
Cdx2P43241 Umad1-202ENSMUST00000159335 2615 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
Cdx2P43241 Ppp2r5e-201ENSMUST00000021447 4810 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Cdx2P43241 Dvl2-201ENSMUST00000019362 2968 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Cdx2P43241 Prr14-201ENSMUST00000033095 2402 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Cdx2P43241 Cux1-206ENSMUST00000176172 4882 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
Cdx2P43241 Naif1-201ENSMUST00000048431 4650 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Cdx2P43241 Rab34-203ENSMUST00000108322 1685 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Cdx2P43241 Gm43294-201ENSMUST00000202850 2490 ntBASIC14.9□□□□□ -0.02
Cdx2P43241 Fam221a-201ENSMUST00000060561 2730 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
Cdx2P43241 Pld5-202ENSMUST00000111166 1370 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Cdx2P43241 Fbxo33-201ENSMUST00000043204 3688 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Cdx2P43241 Pak4-202ENSMUST00000108283 2899 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Cdx2P43241 Nespas-202ENSMUST00000150276 1262 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Cdx2P43241 Gm10244-202ENSMUST00000156905 474 ntTSL 3 BASIC14.9□□□□□ -0.02
Cdx2P43241 Gm27321-201ENSMUST00000185021 205 ntBASIC14.9□□□□□ -0.02
Cdx2P43241 Gm40123-201ENSMUST00000198175 1027 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Cdx2P43241 Nmur1-202ENSMUST00000212058 1287 ntAPPRIS P3 TSL 5 BASIC14.9□□□□□ -0.02
Cdx2P43241 Aga-201ENSMUST00000033920 1181 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
Cdx2P43241 Lmna-202ENSMUST00000036252 1536 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Cdx2P43241 Gusb-203ENSMUST00000111308 2038 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Cdx2P43241 Ush1c-208ENSMUST00000177212 1696 ntAPPRIS ALT2 TSL 5 BASIC14.9□□□□□ -0.02
Cdx2P43241 Phyhd1-204ENSMUST00000113645 1325 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Cdx2P43241 Sec11a-201ENSMUST00000026818 1345 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Cdx2P43241 Lpar5-203ENSMUST00000171989 1458 ntAPPRIS P1 TSL 2 BASIC14.89□□□□□ -0.03
Cdx2P43241 Cep104-201ENSMUST00000047497 5151 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Cdx2P43241 Atp6v0d1-201ENSMUST00000013304 1629 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Cdx2P43241 Rgma-204ENSMUST00000139780 3371 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
Cdx2P43241 Gm34016-201ENSMUST00000222678 1384 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Cdx2P43241 Sirt5-211ENSMUST00000223194 1398 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Cdx2P43241 Snai3-201ENSMUST00000006762 1628 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Cdx2P43241 Appl2-201ENSMUST00000020500 3020 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Cdx2P43241 Gm29361-201ENSMUST00000183323 2000 ntBASIC14.89□□□□□ -0.03
Cdx2P43241 Mtcl1-201ENSMUST00000086693 7221 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
Cdx2P43241 1700010B13Rik-202ENSMUST00000189435 1549 ntTSL 3 BASIC14.89□□□□□ -0.03
Cdx2P43241 Cd164-201ENSMUST00000019962 2922 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Cdx2P43241 Lyrm1-203ENSMUST00000106517 1279 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Cdx2P43241 Trem2-202ENSMUST00000113237 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
Cdx2P43241 Erdr1-202ENSMUST00000177671 708 ntAPPRIS ALT2 TSL 5 BASIC14.89□□□□□ -0.03
Cdx2P43241 Mir6990-201ENSMUST00000183724 91 ntBASIC14.89□□□□□ -0.03
Cdx2P43241 Gm20553-201ENSMUST00000204205 844 ntBASIC14.89□□□□□ -0.03
Cdx2P43241 AC127302.2-201ENSMUST00000215212 268 ntBASIC14.89□□□□□ -0.03
Cdx2P43241 Alkbh7-201ENSMUST00000002737 917 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Cdx2P43241 AC154231.1-201ENSMUST00000220564 2175 ntBASIC14.89□□□□□ -0.03
Cdx2P43241 9230020A06Rik-203ENSMUST00000214621 1682 ntTSL 5 BASIC14.89□□□□□ -0.03
Cdx2P43241 Susd3-202ENSMUST00000058196 1418 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
Cdx2P43241 Lins1-203ENSMUST00000121777 2729 ntAPPRIS P3 TSL 2 BASIC14.89□□□□□ -0.03
Cdx2P43241 Rb1-201ENSMUST00000022701 4656 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Cdx2P43241 Fjx1-201ENSMUST00000099678 3134 ntAPPRIS P1 BASIC14.89□□□□□ -0.03
Cdx2P43241 Tsc22d3-203ENSMUST00000112996 1552 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Cdx2P43241 Ckap4-202ENSMUST00000167671 2606 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Cdx2P43241 Gm5069-201ENSMUST00000050581 1328 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Cdx2P43241 Spag16-201ENSMUST00000065425 2126 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Cdx2P43241 Pomgnt2-206ENSMUST00000216669 2504 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Cdx2P43241 Wt1-205ENSMUST00000143043 3090 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
Cdx2P43241 D930048G16Rik-201ENSMUST00000180975 2266 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Cdx2P43241 Gm19439-201ENSMUST00000198195 2273 ntBASIC14.89□□□□□ -0.03
Cdx2P43241 Ctdsp2-202ENSMUST00000105256 4817 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Cdx2P43241 Dcun1d3-203ENSMUST00000106519 1475 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
Cdx2P43241 Arpc1a-201ENSMUST00000031625 1632 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Cdx2P43241 Pigz-201ENSMUST00000052174 2184 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Cdx2P43241 Ermp1-203ENSMUST00000159692 7058 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Cdx2P43241 Map3k10-201ENSMUST00000036453 3682 ntAPPRIS P2 TSL 1 (best) BASIC14.88□□□□□ -0.03
Cdx2P43241 Klk10-201ENSMUST00000014058 1373 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Cdx2P43241 Pgm3-202ENSMUST00000072585 1920 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Cdx2P43241 Clvs2-203ENSMUST00000160299 2610 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Cdx2P43241 Gm27198-201ENSMUST00000184172 1517 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Cdx2P43241 Neurl1a-202ENSMUST00000111808 4157 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
Cdx2P43241 Chst8-201ENSMUST00000078686 2372 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Cdx2P43241 Fkrp-201ENSMUST00000061390 2827 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Cdx2P43241 Tspan5-203ENSMUST00000121826 1114 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Cdx2P43241 Zfp511-201ENSMUST00000168194 1076 ntAPPRIS P1 TSL 2 BASIC14.88□□□□□ -0.03
Cdx2P43241 1700086L19Rik-202ENSMUST00000185822 1028 ntTSL 3 BASIC14.88□□□□□ -0.03
Cdx2P43241 Gm43474-201ENSMUST00000196415 774 ntBASIC14.88□□□□□ -0.03
Cdx2P43241 Cdipt-205ENSMUST00000206450 951 ntTSL 5 BASIC14.88□□□□□ -0.03
Cdx2P43241 Gm20949-201ENSMUST00000206478 952 ntBASIC14.88□□□□□ -0.03
Cdx2P43241 Smdt1-201ENSMUST00000023086 705 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Cdx2P43241 Rnf157-202ENSMUST00000106398 4553 ntAPPRIS ALT2 TSL 5 BASIC14.88□□□□□ -0.03
Cdx2P43241 Gm17200-201ENSMUST00000170214 2022 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Cdx2P43241 Denr-201ENSMUST00000023869 2339 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Cdx2P43241 Fgf17-202ENSMUST00000227123 1336 ntBASIC14.88□□□□□ -0.03
Cdx2P43241 Tmem37-201ENSMUST00000056089 1311 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Cdx2P43241 Mtg2-201ENSMUST00000087563 1346 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
Cdx2P43241 Stxbp3-205ENSMUST00000138552 1789 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Cdx2P43241 Ntn1-202ENSMUST00000108674 5874 ntAPPRIS P1 TSL 5 BASIC14.87□□□□□ -0.03
Cdx2P43241 Lrrc57-202ENSMUST00000102497 1962 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Cdx2P43241 Gm13127-201ENSMUST00000118978 1389 ntBASIC14.87□□□□□ -0.03
Cdx2P43241 Cbarp-201ENSMUST00000105369 3121 ntAPPRIS P2 TSL 5 BASIC14.87□□□□□ -0.03
Cdx2P43241 Tmem163-203ENSMUST00000160616 2657 ntAPPRIS P1 TSL 2 BASIC14.87□□□□□ -0.03
Cdx2P43241 9130204K15Rik-201ENSMUST00000131441 867 ntTSL 5 BASIC14.87□□□□□ -0.03
Cdx2P43241 Rprl2-201ENSMUST00000157150 290 ntBASIC14.87□□□□□ -0.03
Cdx2P43241 Gm15758-201ENSMUST00000161681 695 ntTSL 5 BASIC14.87□□□□□ -0.03
Cdx2P43241 Gm29683-202ENSMUST00000208511 720 ntTSL 3 BASIC14.87□□□□□ -0.03
Cdx2P43241 AC121788.1-202ENSMUST00000218801 871 ntTSL 5 BASIC14.87□□□□□ -0.03
Cdx2P43241 Gm5628-201ENSMUST00000222318 1049 ntBASIC14.87□□□□□ -0.03
Cdx2P43241 Trem2-201ENSMUST00000024791 1088 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
Cdx2P43241 Smim4-202ENSMUST00000064032 791 ntTSL 3 BASIC14.87□□□□□ -0.03
Cdx2P43241 Haglr-201ENSMUST00000100000 2085 ntBASIC14.87□□□□□ -0.03
Cdx2P43241 Parp6-201ENSMUST00000026267 2709 ntAPPRIS P1 TSL 5 BASIC14.87□□□□□ -0.03
Cdx2P43241 Tspoap1-202ENSMUST00000100644 7390 ntAPPRIS ALT2 TSL 5 BASIC14.87□□□□□ -0.03
Retrieved 100 of 76,532 protein–RNA pairs in 42.3 ms