Protein–RNA interactions for Protein: F7BJK1

Pcdh1, Protocadherin 1 (Fragment), mousemouse

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdh1F7BJK1 Lhx3-201ENSMUST00000028302 2223 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Pcdh1F7BJK1 Faap20-201ENSMUST00000097747 1479 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
Pcdh1F7BJK1 Gm10564-201ENSMUST00000097750 3113 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Pcdh1F7BJK1 Coro1c-201ENSMUST00000004646 3491 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Pcdh1F7BJK1 Atp6v1g2-203ENSMUST00000130992 524 ntTSL 2 BASIC14.21□□□□□ -0.13
Pcdh1F7BJK1 Prlh-201ENSMUST00000166281 276 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Pcdh1F7BJK1 AC159205.6-201ENSMUST00000224935 887 ntBASIC14.21□□□□□ -0.13
Pcdh1F7BJK1 Sox6os-201ENSMUST00000032900 420 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Pcdh1F7BJK1 Prok1-201ENSMUST00000049852 813 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Pcdh1F7BJK1 Epb41l1-204ENSMUST00000103137 6490 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Pcdh1F7BJK1 Sybu-201ENSMUST00000090057 3230 ntAPPRIS P4 TSL 1 (best) BASIC14.21□□□□□ -0.13
Pcdh1F7BJK1 Disc1-205ENSMUST00000117658 2671 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.13
Pcdh1F7BJK1 Borcs5-201ENSMUST00000062755 1764 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Pcdh1F7BJK1 Mcm9-201ENSMUST00000075540 4882 ntAPPRIS P1 TSL 2 BASIC14.21□□□□□ -0.14
Pcdh1F7BJK1 Tnxb-202ENSMUST00000168533 9381 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
Pcdh1F7BJK1 Foxg1-204ENSMUST00000179669 3973 ntAPPRIS P1 BASIC14.21□□□□□ -0.14
Pcdh1F7BJK1 Cobl-203ENSMUST00000109651 5541 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.14
Pcdh1F7BJK1 Cep19-202ENSMUST00000115168 1718 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
Pcdh1F7BJK1 Nanos1-201ENSMUST00000088237 3927 ntAPPRIS P1 BASIC14.21□□□□□ -0.14
Pcdh1F7BJK1 Dclk2-201ENSMUST00000029719 4012 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
Pcdh1F7BJK1 Lrrc56-201ENSMUST00000047093 2197 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
Pcdh1F7BJK1 Ttc14-202ENSMUST00000108210 2684 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
Pcdh1F7BJK1 Gm13034-201ENSMUST00000121342 3177 ntBASIC14.2□□□□□ -0.14
Pcdh1F7BJK1 Slc25a22-201ENSMUST00000019226 2811 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Pcdh1F7BJK1 Mrps27-201ENSMUST00000052249 1849 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Pcdh1F7BJK1 Unc5a-201ENSMUST00000026994 3995 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
Pcdh1F7BJK1 D630044L22Rik-201ENSMUST00000181174 2964 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Pcdh1F7BJK1 Efcab14-204ENSMUST00000106525 2792 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Pcdh1F7BJK1 6030419C18Rik-202ENSMUST00000216294 1601 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Pcdh1F7BJK1 Hsph1-209ENSMUST00000202089 3054 ntTSL 5 BASIC14.2□□□□□ -0.14
Pcdh1F7BJK1 Bhlhe41-202ENSMUST00000111703 744 ntTSL 3 BASIC14.2□□□□□ -0.14
Pcdh1F7BJK1 Rapgef3os1-201ENSMUST00000149373 483 ntTSL 3 BASIC14.2□□□□□ -0.14
Pcdh1F7BJK1 4933427E11Rik-201ENSMUST00000056711 1214 ntBASIC14.2□□□□□ -0.14
Pcdh1F7BJK1 Nnat-201ENSMUST00000088484 458 ntTSL 2 BASIC14.2□□□□□ -0.14
Pcdh1F7BJK1 Shank3-201ENSMUST00000039074 7131 ntAPPRIS P2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Pcdh1F7BJK1 Ptprt-202ENSMUST00000109442 7719 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
Pcdh1F7BJK1 Bri3bp-201ENSMUST00000049040 6473 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Pcdh1F7BJK1 March4-201ENSMUST00000047786 4553 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Pcdh1F7BJK1 Apol8-201ENSMUST00000070911 1838 ntAPPRIS P2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Pcdh1F7BJK1 Sppl2b-201ENSMUST00000035597 2869 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Pcdh1F7BJK1 Map3k3-201ENSMUST00000002044 3450 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Pcdh1F7BJK1 Chst11-201ENSMUST00000040110 5527 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Pcdh1F7BJK1 Entpd6-201ENSMUST00000094467 2540 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Pcdh1F7BJK1 Tmem116-204ENSMUST00000111795 2221 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
Pcdh1F7BJK1 A330040F15Rik-202ENSMUST00000224046 1918 ntBASIC14.19□□□□□ -0.14
Pcdh1F7BJK1 Uxs1-202ENSMUST00000126008 4620 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Pcdh1F7BJK1 Idh2-201ENSMUST00000107384 1745 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Pcdh1F7BJK1 Mark2-209ENSMUST00000165965 2874 ntAPPRIS P4 TSL 1 (best) BASIC14.19□□□□□ -0.14
Pcdh1F7BJK1 Wnt10b-206ENSMUST00000228546 2709 ntBASIC14.19□□□□□ -0.14
Pcdh1F7BJK1 Flywch1-202ENSMUST00000086325 2443 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Pcdh1F7BJK1 Polr3gl-201ENSMUST00000091924 1427 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Pcdh1F7BJK1 Pofut2-201ENSMUST00000020493 2290 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Pcdh1F7BJK1 Cdc34-202ENSMUST00000166603 1078 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Pcdh1F7BJK1 Gm19610-201ENSMUST00000202894 408 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Pcdh1F7BJK1 Gm10252-201ENSMUST00000209541 832 ntBASIC14.19□□□□□ -0.14
Pcdh1F7BJK1 Srrd-201ENSMUST00000031289 1110 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Pcdh1F7BJK1 Bax-201ENSMUST00000033093 867 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Pcdh1F7BJK1 Olfr317-201ENSMUST00000075607 1128 ntAPPRIS P1 BASIC14.19□□□□□ -0.14
Pcdh1F7BJK1 Odf1-201ENSMUST00000081966 1105 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Pcdh1F7BJK1 Fbxo36-201ENSMUST00000097672 901 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Pcdh1F7BJK1 Grwd1-202ENSMUST00000131384 1974 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Pcdh1F7BJK1 Sigirr-201ENSMUST00000097958 1990 ntAPPRIS P2 TSL 1 (best) BASIC14.19□□□□□ -0.14
Pcdh1F7BJK1 Usp30-201ENSMUST00000031588 4604 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Pcdh1F7BJK1 Git2-204ENSMUST00000112185 5032 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Pcdh1F7BJK1 Snn-201ENSMUST00000089011 2902 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Pcdh1F7BJK1 Ier5-201ENSMUST00000055322 3276 ntAPPRIS P1 BASIC14.19□□□□□ -0.14
Pcdh1F7BJK1 Sgms1-201ENSMUST00000099514 3665 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Pcdh1F7BJK1 Poli-201ENSMUST00000043286 2591 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Pcdh1F7BJK1 Ggnbp2-213ENSMUST00000172405 2950 ntAPPRIS P2 TSL 1 (best) BASIC14.19□□□□□ -0.14
Pcdh1F7BJK1 Dhx16-201ENSMUST00000025292 3351 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Pcdh1F7BJK1 Eif2b1-201ENSMUST00000031334 2013 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Pcdh1F7BJK1 Slc4a5-203ENSMUST00000113900 3630 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
Pcdh1F7BJK1 Kcng4-202ENSMUST00000164382 1875 ntAPPRIS P1 TSL 5 BASIC14.18□□□□□ -0.14
Pcdh1F7BJK1 Fastk-203ENSMUST00000115043 3056 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Pcdh1F7BJK1 Agbl3-205ENSMUST00000115017 3719 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
Pcdh1F7BJK1 Zyx-205ENSMUST00000203401 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Pcdh1F7BJK1 Nfat5-211ENSMUST00000151114 4982 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
Pcdh1F7BJK1 Pptc7-202ENSMUST00000119015 2233 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Pcdh1F7BJK1 Six3os1-212ENSMUST00000177220 5601 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Pcdh1F7BJK1 Smyd4-201ENSMUST00000044530 3517 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Pcdh1F7BJK1 Trip10-202ENSMUST00000224152 1812 ntAPPRIS ALT2 BASIC14.18□□□□□ -0.14
Pcdh1F7BJK1 Zfp444-201ENSMUST00000054680 2467 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Pcdh1F7BJK1 Gm12999-201ENSMUST00000124471 485 ntTSL 2 BASIC14.18□□□□□ -0.14
Pcdh1F7BJK1 Cxxc4-201ENSMUST00000166288 1290 ntAPPRIS ALT2 TSL 5 BASIC14.18□□□□□ -0.14
Pcdh1F7BJK1 Gm26643-201ENSMUST00000180854 1274 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Pcdh1F7BJK1 Mir6982-201ENSMUST00000184354 68 ntBASIC14.18□□□□□ -0.14
Pcdh1F7BJK1 Pabpn1l-202ENSMUST00000212966 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Pcdh1F7BJK1 4932443I19Rik-204ENSMUST00000214337 1212 ntAPPRIS ALT2 TSL 5 BASIC14.18□□□□□ -0.14
Pcdh1F7BJK1 AC122351.1-201ENSMUST00000220467 126 ntBASIC14.18□□□□□ -0.14
Pcdh1F7BJK1 Fam92a-201ENSMUST00000087052 1292 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Pcdh1F7BJK1 Lonrf3-201ENSMUST00000016383 2911 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Pcdh1F7BJK1 Prtg-201ENSMUST00000055535 9148 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Pcdh1F7BJK1 A430035B10Rik-204ENSMUST00000148063 2010 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Pcdh1F7BJK1 Ablim2-202ENSMUST00000101280 3042 ntTSL 5 BASIC14.18□□□□□ -0.14
Pcdh1F7BJK1 Hspa1a-201ENSMUST00000087328 2967 ntAPPRIS P1 BASIC14.18□□□□□ -0.14
Pcdh1F7BJK1 Chmp4c-201ENSMUST00000029049 6188 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Pcdh1F7BJK1 Ppp4r3a-202ENSMUST00000163095 4083 ntTSL 5 BASIC14.18□□□□□ -0.14
Pcdh1F7BJK1 9630013D21Rik-204ENSMUST00000156790 3096 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Pcdh1F7BJK1 Adam23-204ENSMUST00000114103 2655 ntAPPRIS ALT2 TSL 5 BASIC14.18□□□□□ -0.14
Pcdh1F7BJK1 Rnf114-202ENSMUST00000109214 3001 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Retrieved 100 of 76,532 protein–RNA pairs in 28 ms