Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Naa10-204ENSMUST00000114389 1031 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
Smc1aQ9CU62 Platr15-201ENSMUST00000147128 768 ntTSL 5 BASIC17.64■□□□□ 0.41
Smc1aQ9CU62 Gm38119-201ENSMUST00000192027 755 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
Smc1aQ9CU62 Hikeshi-207ENSMUST00000207309 835 ntTSL 5 BASIC17.64■□□□□ 0.41
Smc1aQ9CU62 Bpifa3-201ENSMUST00000028984 1107 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
Smc1aQ9CU62 Rad51d-203ENSMUST00000092844 1228 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Smc1aQ9CU62 Trim14-202ENSMUST00000102924 1582 ntTSL 2 BASIC17.64■□□□□ 0.41
Smc1aQ9CU62 Gata4-202ENSMUST00000118022 3374 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
Smc1aQ9CU62 Cdk16-201ENSMUST00000033380 3120 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Smc1aQ9CU62 Cnot11-203ENSMUST00000161515 3482 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Smc1aQ9CU62 Phf7-203ENSMUST00000226565 1971 ntBASIC17.64■□□□□ 0.41
Smc1aQ9CU62 Ptch1-201ENSMUST00000021921 7725 ntAPPRIS P2 TSL 1 (best) BASIC17.64■□□□□ 0.41
Smc1aQ9CU62 Sh3glb1-205ENSMUST00000199854 1416 ntTSL 5 BASIC17.64■□□□□ 0.41
Smc1aQ9CU62 Dffb-201ENSMUST00000030893 2093 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Smc1aQ9CU62 Nodal-201ENSMUST00000049339 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Smc1aQ9CU62 Sfrp4-201ENSMUST00000002883 1764 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Smc1aQ9CU62 Cyb561d2-201ENSMUST00000041459 1786 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Smc1aQ9CU62 Ccdc166-202ENSMUST00000183130 1563 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
Smc1aQ9CU62 Phax-201ENSMUST00000008445 1942 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
Smc1aQ9CU62 Klc4-201ENSMUST00000003642 2322 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Smc1aQ9CU62 Pi4k2a-201ENSMUST00000066778 3771 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Smc1aQ9CU62 Ascl2-201ENSMUST00000009392 1605 ntAPPRIS P2 TSL 1 (best) BASIC17.63■□□□□ 0.41
Smc1aQ9CU62 Wipf3-204ENSMUST00000132855 4516 ntAPPRIS P4 TSL 5 BASIC17.63■□□□□ 0.41
Smc1aQ9CU62 Gm10052-201ENSMUST00000168019 960 ntBASIC17.63■□□□□ 0.41
Smc1aQ9CU62 4930519L02Rik-201ENSMUST00000197683 619 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Smc1aQ9CU62 Gm2270-201ENSMUST00000222858 797 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Smc1aQ9CU62 Nmu-201ENSMUST00000031146 828 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Smc1aQ9CU62 Cklf-201ENSMUST00000034342 667 ntAPPRIS P4 TSL 1 (best) BASIC17.63■□□□□ 0.41
Smc1aQ9CU62 Gm7729-201ENSMUST00000050143 801 ntBASIC17.63■□□□□ 0.41
Smc1aQ9CU62 Gzme-201ENSMUST00000089549 916 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Smc1aQ9CU62 Fhl1-201ENSMUST00000023854 2356 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Smc1aQ9CU62 Exoc8-201ENSMUST00000098312 4598 ntAPPRIS P1 BASIC17.63■□□□□ 0.41
Smc1aQ9CU62 Rcn2-201ENSMUST00000114276 2024 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Smc1aQ9CU62 Rmdn1-201ENSMUST00000029888 1734 ntAPPRIS P2 TSL 1 (best) BASIC17.63■□□□□ 0.41
Smc1aQ9CU62 Gdf3-201ENSMUST00000032211 2125 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Smc1aQ9CU62 Tpm4-201ENSMUST00000003575 2128 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Smc1aQ9CU62 Grk6-202ENSMUST00000099482 2169 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
Smc1aQ9CU62 Plxnc1-201ENSMUST00000099337 7302 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Smc1aQ9CU62 Gps1-202ENSMUST00000116305 1827 ntAPPRIS P2 TSL 1 (best) BASIC17.63■□□□□ 0.41
Smc1aQ9CU62 Fbxl21-201ENSMUST00000045428 1965 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Smc1aQ9CU62 Sass6-205ENSMUST00000198311 2404 ntAPPRIS P2 TSL 1 (best) BASIC17.62■□□□□ 0.41
Smc1aQ9CU62 Gm26892-201ENSMUST00000181695 1636 ntTSL 5 BASIC17.62■□□□□ 0.41
Smc1aQ9CU62 Akirin1-201ENSMUST00000102636 3052 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Smc1aQ9CU62 Tead4-201ENSMUST00000006311 3076 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Smc1aQ9CU62 Adgrd2-ps-201ENSMUST00000118797 2662 ntBASIC17.62■□□□□ 0.41
Smc1aQ9CU62 Dyrk3-201ENSMUST00000016670 3164 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Smc1aQ9CU62 Gm44443-201ENSMUST00000204396 5633 ntBASIC17.62■□□□□ 0.41
Smc1aQ9CU62 Bend6-204ENSMUST00000129464 1750 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Smc1aQ9CU62 Dok5-201ENSMUST00000029075 1768 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Smc1aQ9CU62 Gmnn-202ENSMUST00000110382 963 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Smc1aQ9CU62 4930458A03Rik-201ENSMUST00000198197 961 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Smc1aQ9CU62 Npw-202ENSMUST00000213213 531 ntAPPRIS P2 TSL 1 (best) BASIC17.62■□□□□ 0.41
Smc1aQ9CU62 Tead2-203ENSMUST00000107801 3396 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
Smc1aQ9CU62 Chd3-201ENSMUST00000092971 6066 ntAPPRIS ALT2 TSL 5 BASIC17.62■□□□□ 0.41
Smc1aQ9CU62 5830415G21Rik-201ENSMUST00000192543 1332 ntBASIC17.62■□□□□ 0.41
Smc1aQ9CU62 Tef-201ENSMUST00000023024 4079 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Smc1aQ9CU62 Ager-201ENSMUST00000015596 1370 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
Smc1aQ9CU62 Bcap29-201ENSMUST00000020979 1949 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Smc1aQ9CU62 Serf2-204ENSMUST00000139253 3056 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Smc1aQ9CU62 Gm9821-201ENSMUST00000178895 1953 ntAPPRIS P1 BASIC17.62■□□□□ 0.41
Smc1aQ9CU62 Ano8-201ENSMUST00000093450 3653 ntAPPRIS P2 TSL 1 (best) BASIC17.62■□□□□ 0.41
Smc1aQ9CU62 Patz1-205ENSMUST00000110043 3702 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
Smc1aQ9CU62 Cdc23-201ENSMUST00000025228 2084 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Smc1aQ9CU62 Hhat-201ENSMUST00000044190 2839 ntAPPRIS P2 TSL 1 (best) BASIC17.62■□□□□ 0.41
Smc1aQ9CU62 Anks1b-214ENSMUST00000182356 7561 ntTSL 5 BASIC17.61■□□□□ 0.41
Smc1aQ9CU62 Irak2-203ENSMUST00000089023 1734 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Smc1aQ9CU62 Gnb1-203ENSMUST00000165335 3143 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Smc1aQ9CU62 Ppp1r37-201ENSMUST00000058444 3816 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Smc1aQ9CU62 Gm45723-201ENSMUST00000212135 1783 ntTSL 5 BASIC17.61■□□□□ 0.41
Smc1aQ9CU62 Adam9-204ENSMUST00000208247 4044 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
Smc1aQ9CU62 Wipi1-201ENSMUST00000047186 3338 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Smc1aQ9CU62 Bclaf3-202ENSMUST00000112464 3366 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
Smc1aQ9CU62 Gm16279-201ENSMUST00000149452 2945 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Smc1aQ9CU62 Klk12-202ENSMUST00000107970 1115 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
Smc1aQ9CU62 Gm15372-201ENSMUST00000120729 834 ntBASIC17.61■□□□□ 0.41
Smc1aQ9CU62 Syne4-208ENSMUST00000176304 1006 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
Smc1aQ9CU62 Tnnt2-205ENSMUST00000178204 1172 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
Smc1aQ9CU62 Gm21887-202ENSMUST00000179760 483 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
Smc1aQ9CU62 Tnnt2-207ENSMUST00000179863 1097 ntAPPRIS P4 TSL 5 BASIC17.61■□□□□ 0.41
Smc1aQ9CU62 Tnnt2-209ENSMUST00000188028 1200 ntAPPRIS P4 TSL 5 BASIC17.61■□□□□ 0.41
Smc1aQ9CU62 Ank1-201ENSMUST00000033947 1030 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Smc1aQ9CU62 Slc25a43-201ENSMUST00000047655 1111 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Smc1aQ9CU62 Sucla2-203ENSMUST00000160507 2229 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Smc1aQ9CU62 I0C0044D17Rik-201ENSMUST00000097964 2264 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Smc1aQ9CU62 Gm6190-201ENSMUST00000220683 1374 ntBASIC17.61■□□□□ 0.41
Smc1aQ9CU62 Rfesd-203ENSMUST00000179078 1436 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Smc1aQ9CU62 Zbtb7c-201ENSMUST00000058997 4569 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Smc1aQ9CU62 Pcolce-202ENSMUST00000054564 1585 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
Smc1aQ9CU62 Adam23-204ENSMUST00000114103 2655 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
Smc1aQ9CU62 Btaf1-201ENSMUST00000099494 7204 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Smc1aQ9CU62 Lonp2-201ENSMUST00000034141 2860 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Smc1aQ9CU62 Rnf170-209ENSMUST00000209300 1881 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Smc1aQ9CU62 Sybu-207ENSMUST00000227305 3124 ntAPPRIS ALT2 BASIC17.61■□□□□ 0.41
Smc1aQ9CU62 Pcsk6-201ENSMUST00000055576 4405 ntAPPRIS P3 TSL 5 BASIC17.61■□□□□ 0.41
Smc1aQ9CU62 Ppp2r2d-207ENSMUST00000155672 1938 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Smc1aQ9CU62 Rusc1-203ENSMUST00000166687 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
Smc1aQ9CU62 B4galt3-201ENSMUST00000064272 1998 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Smc1aQ9CU62 Skor1-202ENSMUST00000116613 3591 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
Smc1aQ9CU62 Myrf-202ENSMUST00000186056 3636 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
Smc1aQ9CU62 Sbk2-202ENSMUST00000182214 2236 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
Retrieved 100 of 76,532 protein–RNA pairs in 33 ms