Protein–RNA interactions for Protein: Q99K46

Usp11, Ubiquitin carboxyl-terminal hydrolase 11, mousemouse

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp11Q99K46 Sec61b-201ENSMUST00000065678 564 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Usp11Q99K46 Mast3-201ENSMUST00000166004 5305 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
Usp11Q99K46 Prrx1-202ENSMUST00000075805 4986 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Usp11Q99K46 Tcf3-209ENSMUST00000105345 2950 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
Usp11Q99K46 Stradb-201ENSMUST00000027185 2960 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Usp11Q99K46 Fam214b-204ENSMUST00000107958 3280 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Usp11Q99K46 Adgrl1-210ENSMUST00000152978 5734 ntTSL 5 BASIC16.67■□□□□ 0.26
Usp11Q99K46 Rhbg-201ENSMUST00000171887 1937 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Usp11Q99K46 Ambra1-205ENSMUST00000111317 4929 ntTSL 5 BASIC16.66■□□□□ 0.26
Usp11Q99K46 Tead4-201ENSMUST00000006311 3076 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Usp11Q99K46 Shcbp1l-201ENSMUST00000042373 2092 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Usp11Q99K46 Fhl1-201ENSMUST00000023854 2356 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Usp11Q99K46 Nxpe3-201ENSMUST00000099705 6430 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Usp11Q99K46 Tcta-201ENSMUST00000044725 1668 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Usp11Q99K46 Dtx3-202ENSMUST00000116229 1994 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Usp11Q99K46 Pnpo-201ENSMUST00000018803 1994 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Usp11Q99K46 4931440P22Rik-202ENSMUST00000147424 2430 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Usp11Q99K46 Kri1-201ENSMUST00000038671 2598 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
Usp11Q99K46 Tbc1d30-201ENSMUST00000064107 5695 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Usp11Q99K46 Pde4b-208ENSMUST00000106911 3020 ntAPPRIS ALT1 TSL 5 BASIC16.66■□□□□ 0.26
Usp11Q99K46 Strn4-202ENSMUST00000108495 3082 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
Usp11Q99K46 Znhit1-203ENSMUST00000111090 698 ntTSL 2 BASIC16.66■□□□□ 0.26
Usp11Q99K46 Mdfi-203ENSMUST00000113280 1281 ntTSL 5 BASIC16.66■□□□□ 0.26
Usp11Q99K46 H2-DMb1-201ENSMUST00000114232 1404 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Usp11Q99K46 Gm7284-201ENSMUST00000131667 944 ntBASIC16.66■□□□□ 0.26
Usp11Q99K46 A730015C16Rik-201ENSMUST00000164855 1221 ntAPPRIS P1 BASIC16.66■□□□□ 0.26
Usp11Q99K46 Gm19345-201ENSMUST00000172815 993 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Usp11Q99K46 Gm27704-201ENSMUST00000185094 107 ntBASIC16.66■□□□□ 0.26
Usp11Q99K46 Tmem50b-201ENSMUST00000023686 2347 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Usp11Q99K46 Gdf5-201ENSMUST00000040162 2320 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Usp11Q99K46 Mrps6-201ENSMUST00000047429 846 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Usp11Q99K46 Mapk8ip1-201ENSMUST00000050312 2930 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
Usp11Q99K46 Dclk2-201ENSMUST00000029719 4012 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
Usp11Q99K46 Camkv-201ENSMUST00000035700 3277 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Usp11Q99K46 Col13a1-203ENSMUST00000105452 3037 ntAPPRIS ALT2 TSL 5 BASIC16.66■□□□□ 0.26
Usp11Q99K46 Sike1-201ENSMUST00000029447 7375 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Usp11Q99K46 Magix-201ENSMUST00000115695 1342 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Usp11Q99K46 Gnb3-201ENSMUST00000024206 1846 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Usp11Q99K46 Stxbp5l-202ENSMUST00000114775 1691 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Usp11Q99K46 Anks1b-219ENSMUST00000182600 1697 ntTSL 5 BASIC16.65■□□□□ 0.26
Usp11Q99K46 Shox2-202ENSMUST00000162060 1537 ntTSL 3 BASIC16.65■□□□□ 0.26
Usp11Q99K46 Fam84b-201ENSMUST00000100635 5565 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Usp11Q99K46 Rnf170-209ENSMUST00000209300 1881 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Usp11Q99K46 Bnc1-201ENSMUST00000026096 4646 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Usp11Q99K46 Bend6-204ENSMUST00000129464 1750 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Usp11Q99K46 Atp6v1g2-203ENSMUST00000130992 524 ntTSL 2 BASIC16.65■□□□□ 0.26
Usp11Q99K46 Gm38186-201ENSMUST00000192574 449 ntTSL 3 BASIC16.65■□□□□ 0.26
Usp11Q99K46 Prm2-201ENSMUST00000037996 621 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Usp11Q99K46 Rpl36al-201ENSMUST00000054544 526 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Usp11Q99K46 Prima1-201ENSMUST00000074416 909 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Usp11Q99K46 Gm29340-201ENSMUST00000188763 3854 ntBASIC16.65■□□□□ 0.26
Usp11Q99K46 4932702P03Rik-201ENSMUST00000138447 1482 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Usp11Q99K46 AC115863.1-201ENSMUST00000214815 1813 ntBASIC16.65■□□□□ 0.26
Usp11Q99K46 Runx2-202ENSMUST00000113571 5898 ntAPPRIS P3 TSL 5 BASIC16.65■□□□□ 0.26
Usp11Q99K46 Degs1-201ENSMUST00000035295 2048 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Usp11Q99K46 BC037032-201ENSMUST00000140003 3974 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Usp11Q99K46 Pwwp2a-201ENSMUST00000061070 3277 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
Usp11Q99K46 Rint1-205ENSMUST00000120869 1886 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Usp11Q99K46 Fancm-201ENSMUST00000058889 7775 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Usp11Q99K46 Rflnb-201ENSMUST00000021207 3512 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Usp11Q99K46 BC024978-204ENSMUST00000179391 1748 ntAPPRIS P3 TSL 5 BASIC16.65■□□□□ 0.26
Usp11Q99K46 Adck1-204ENSMUST00000222695 2253 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Usp11Q99K46 Papd5-202ENSMUST00000118952 4597 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Usp11Q99K46 Raxos1-201ENSMUST00000181100 2547 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Usp11Q99K46 Gpc5-202ENSMUST00000175665 2187 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Usp11Q99K46 Mex3c-201ENSMUST00000091852 3738 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Usp11Q99K46 Bag4-201ENSMUST00000038498 4876 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Usp11Q99K46 Ruvbl2-201ENSMUST00000107771 1834 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Usp11Q99K46 Gm14859-201ENSMUST00000117752 357 ntBASIC16.64■□□□□ 0.25
Usp11Q99K46 Hotairm1-202ENSMUST00000132559 713 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Usp11Q99K46 Mrps12-204ENSMUST00000171183 883 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
Usp11Q99K46 Gm21362-201ENSMUST00000194272 928 ntBASIC16.64■□□□□ 0.25
Usp11Q99K46 D030044L04Rik-201ENSMUST00000204220 1291 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Usp11Q99K46 Ak6-201ENSMUST00000022135 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Usp11Q99K46 Tmem128-201ENSMUST00000087511 1291 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Usp11Q99K46 Gm13285-201ENSMUST00000179725 1462 ntAPPRIS P1 BASIC16.64■□□□□ 0.25
Usp11Q99K46 Sirt6-201ENSMUST00000042923 1891 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
Usp11Q99K46 Vps51-201ENSMUST00000025711 2489 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Usp11Q99K46 Npr3-201ENSMUST00000066529 6892 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
Usp11Q99K46 A4galt-202ENSMUST00000164614 2128 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Usp11Q99K46 Otub1-202ENSMUST00000123594 1728 ntTSL 5 BASIC16.64■□□□□ 0.25
Usp11Q99K46 Gpd1l-204ENSMUST00000146623 4391 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Usp11Q99K46 Kirrel-202ENSMUST00000107618 7278 ntAPPRIS P2 TSL 5 BASIC16.64■□□□□ 0.25
Usp11Q99K46 Atxn7l2-203ENSMUST00000117784 2387 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
Usp11Q99K46 Tuba1c-201ENSMUST00000058914 1977 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Usp11Q99K46 Usp35-201ENSMUST00000139582 4262 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
Usp11Q99K46 Tcf3-204ENSMUST00000105340 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
Usp11Q99K46 Tcf3-202ENSMUST00000020379 2829 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
Usp11Q99K46 Pdzrn3-201ENSMUST00000075994 4104 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Usp11Q99K46 Dpagt1-201ENSMUST00000054708 2205 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Usp11Q99K46 Asic4-202ENSMUST00000113577 2667 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
Usp11Q99K46 Fam221a-201ENSMUST00000060561 2730 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
Usp11Q99K46 Jph4-202ENSMUST00000124493 3200 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Usp11Q99K46 Sdf4-203ENSMUST00000105578 1654 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Usp11Q99K46 Pde1c-203ENSMUST00000164037 3068 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Usp11Q99K46 Zkscan3-203ENSMUST00000116434 2600 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Usp11Q99K46 2010007H06Rik-202ENSMUST00000186025 4934 ntTSL 2 BASIC16.63■□□□□ 0.25
Usp11Q99K46 Usp38-201ENSMUST00000042724 4707 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Usp11Q99K46 Srpx-202ENSMUST00000115543 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
Usp11Q99K46 Tekt5-202ENSMUST00000115831 1277 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
Retrieved 100 of 76,532 protein–RNA pairs in 66 ms