Protein–RNA interactions for Protein: Q8CEC0

Nup88, Nuclear pore complex protein Nup88, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nup88Q8CEC0 Ggnbp1-201ENSMUST00000053683 1525 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
Nup88Q8CEC0 Gmnn-202ENSMUST00000110382 963 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Nup88Q8CEC0 Gm13884-201ENSMUST00000118103 829 ntBASIC18.61■□□□□ 0.57
Nup88Q8CEC0 Zfp133-ps-202ENSMUST00000124788 1079 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Nup88Q8CEC0 Scpep1os-201ENSMUST00000139592 811 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Nup88Q8CEC0 2210408F21Rik-212ENSMUST00000152157 490 ntTSL 2 BASIC18.61■□□□□ 0.57
Nup88Q8CEC0 Gm5091-201ENSMUST00000181658 1179 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Nup88Q8CEC0 Tal1-201ENSMUST00000030489 4213 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Nup88Q8CEC0 Sdc1-205ENSMUST00000171158 2311 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Nup88Q8CEC0 Rcn2-201ENSMUST00000114276 2024 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Nup88Q8CEC0 Fgf2-208ENSMUST00000200585 5973 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
Nup88Q8CEC0 Inhbc-201ENSMUST00000026472 1859 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Nup88Q8CEC0 Pmpca-201ENSMUST00000076431 3135 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Nup88Q8CEC0 1700025L06Rik-203ENSMUST00000211477 1623 ntTSL 5 BASIC18.6■□□□□ 0.57
Nup88Q8CEC0 Esr1-203ENSMUST00000105589 2612 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Nup88Q8CEC0 Tmx4-203ENSMUST00000110120 2602 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
Nup88Q8CEC0 Kctd20-208ENSMUST00000168507 2400 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Nup88Q8CEC0 Rnf14-203ENSMUST00000171461 3351 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Nup88Q8CEC0 Capn15-205ENSMUST00000212520 5216 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
Nup88Q8CEC0 Tmem87b-201ENSMUST00000110325 4807 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Nup88Q8CEC0 Mansc4-201ENSMUST00000100780 1125 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
Nup88Q8CEC0 Uqcc2-203ENSMUST00000119227 452 ntTSL 3 BASIC18.6■□□□□ 0.57
Nup88Q8CEC0 Gm12536-201ENSMUST00000129102 358 ntTSL 2 BASIC18.6■□□□□ 0.57
Nup88Q8CEC0 Npcd-201ENSMUST00000023060 1162 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
Nup88Q8CEC0 Flt1-203ENSMUST00000110529 6292 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Nup88Q8CEC0 Bicd2-203ENSMUST00000110085 4588 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
Nup88Q8CEC0 Matn1-201ENSMUST00000102576 2001 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Nup88Q8CEC0 App-207ENSMUST00000227737 2827 ntBASIC18.6■□□□□ 0.57
Nup88Q8CEC0 Fzd10-201ENSMUST00000117102 3250 ntAPPRIS P1 BASIC18.6■□□□□ 0.57
Nup88Q8CEC0 Ldha-201ENSMUST00000005051 1766 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Nup88Q8CEC0 Ltbp1-201ENSMUST00000001927 6671 ntTSL 5 BASIC18.6■□□□□ 0.57
Nup88Q8CEC0 Gm17501-201ENSMUST00000181247 1700 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Nup88Q8CEC0 Kpna4-203ENSMUST00000194558 3726 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Nup88Q8CEC0 Antxr2-201ENSMUST00000031281 5656 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
Nup88Q8CEC0 Tbc1d10b-201ENSMUST00000120705 3614 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Nup88Q8CEC0 Ankrd44-210ENSMUST00000179030 6140 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
Nup88Q8CEC0 Ctnna2-205ENSMUST00000161846 4018 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Nup88Q8CEC0 Plcl1-201ENSMUST00000042986 6580 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Nup88Q8CEC0 Crhr2-203ENSMUST00000114374 1440 ntAPPRIS ALT1 TSL 5 BASIC18.59■□□□□ 0.57
Nup88Q8CEC0 Prmt6-203ENSMUST00000190378 3051 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Nup88Q8CEC0 Rbm26-202ENSMUST00000100327 3634 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Nup88Q8CEC0 Fam222b-202ENSMUST00000100782 2473 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Nup88Q8CEC0 Tmem248-202ENSMUST00000111298 3570 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Nup88Q8CEC0 Hexb-201ENSMUST00000022169 1905 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Nup88Q8CEC0 Smarcc1-204ENSMUST00000197984 3538 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
Nup88Q8CEC0 Cd2bp2-201ENSMUST00000035771 1309 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Nup88Q8CEC0 Klc4-201ENSMUST00000003642 2322 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Nup88Q8CEC0 Ubqln4-201ENSMUST00000008748 3330 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Nup88Q8CEC0 Speg-202ENSMUST00000113587 1254 ntTSL 5 BASIC18.59■□□□□ 0.57
Nup88Q8CEC0 Gm13312-201ENSMUST00000119631 718 ntBASIC18.59■□□□□ 0.57
Nup88Q8CEC0 Platr15-201ENSMUST00000147128 768 ntTSL 5 BASIC18.59■□□□□ 0.57
Nup88Q8CEC0 Gm19345-201ENSMUST00000172815 993 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Nup88Q8CEC0 Rhoc-201ENSMUST00000002303 1202 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Nup88Q8CEC0 Nmu-201ENSMUST00000031146 828 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Nup88Q8CEC0 Olfr571-201ENSMUST00000061738 969 ntAPPRIS P1 BASIC18.59■□□□□ 0.57
Nup88Q8CEC0 Tmem5-205ENSMUST00000140299 4793 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Nup88Q8CEC0 Eif4a2-201ENSMUST00000023599 2208 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
Nup88Q8CEC0 Acadvl-202ENSMUST00000102574 2168 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
Nup88Q8CEC0 Fyn-201ENSMUST00000063091 3562 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Nup88Q8CEC0 Myo16-204ENSMUST00000208309 2462 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Nup88Q8CEC0 Ogfod2-201ENSMUST00000024470 1596 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Nup88Q8CEC0 Cd40-202ENSMUST00000073707 1596 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
Nup88Q8CEC0 Mau2-204ENSMUST00000212308 2887 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
Nup88Q8CEC0 Npdc1-202ENSMUST00000071442 1485 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.57
Nup88Q8CEC0 Usp35-202ENSMUST00000168435 3982 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.57
Nup88Q8CEC0 Chuk-202ENSMUST00000119591 3481 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
Nup88Q8CEC0 Madcam1-201ENSMUST00000020554 1436 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.57
Nup88Q8CEC0 Tcf3-209ENSMUST00000105345 2950 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.57
Nup88Q8CEC0 Grk6-202ENSMUST00000099482 2169 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.57
Nup88Q8CEC0 5730480H06Rik-205ENSMUST00000196950 3300 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Nup88Q8CEC0 Paxbp1-202ENSMUST00000118522 3973 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Nup88Q8CEC0 Cdkl3-209ENSMUST00000120374 2770 ntAPPRIS ALT2 TSL 5 BASIC18.58■□□□□ 0.56
Nup88Q8CEC0 Nup98-205ENSMUST00000211022 3132 ntTSL 2 BASIC18.58■□□□□ 0.56
Nup88Q8CEC0 Hint3-203ENSMUST00000161074 875 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Nup88Q8CEC0 AC153794.1-201ENSMUST00000169148 126 ntBASIC18.58■□□□□ 0.56
Nup88Q8CEC0 Gm20675-201ENSMUST00000175861 338 ntTSL 3 BASIC18.58■□□□□ 0.56
Nup88Q8CEC0 Gm36967-201ENSMUST00000193814 266 ntBASIC18.58■□□□□ 0.56
Nup88Q8CEC0 4930458A03Rik-201ENSMUST00000198197 961 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
Nup88Q8CEC0 AC153556.1-201ENSMUST00000215135 794 ntTSL 5 BASIC18.58■□□□□ 0.56
Nup88Q8CEC0 Nudt16l1-201ENSMUST00000050881 1269 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Nup88Q8CEC0 Npm1-201ENSMUST00000075641 1633 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Nup88Q8CEC0 Chst14-202ENSMUST00000110837 1991 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
Nup88Q8CEC0 Wdr26-207ENSMUST00000162819 6619 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.56
Nup88Q8CEC0 Bnip2-202ENSMUST00000085393 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
Nup88Q8CEC0 Ugcg-201ENSMUST00000030074 4012 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Nup88Q8CEC0 Lbp-201ENSMUST00000016168 2525 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Nup88Q8CEC0 Casq1-201ENSMUST00000003554 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Nup88Q8CEC0 Mettl16-201ENSMUST00000010698 2073 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
Nup88Q8CEC0 Golph3-201ENSMUST00000059680 2652 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Nup88Q8CEC0 Kdf1-201ENSMUST00000042919 1708 ntAPPRIS P2 TSL 1 (best) BASIC18.57■□□□□ 0.56
Nup88Q8CEC0 Ppp1r37-201ENSMUST00000058444 3816 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Nup88Q8CEC0 Smarcd1-201ENSMUST00000023759 3153 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Nup88Q8CEC0 Clcn3-203ENSMUST00000093490 5518 ntAPPRIS ALT1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Nup88Q8CEC0 Tfap2b-202ENSMUST00000064976 1946 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
Nup88Q8CEC0 Syt3-202ENSMUST00000118962 2494 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
Nup88Q8CEC0 Macrod2-201ENSMUST00000043836 3552 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
Nup88Q8CEC0 Nes-201ENSMUST00000090973 6126 ntAPPRIS P2 TSL 1 (best) BASIC18.57■□□□□ 0.56
Nup88Q8CEC0 Chchd2-ps-201ENSMUST00000117487 462 ntBASIC18.57■□□□□ 0.56
Nup88Q8CEC0 Wnt5b-202ENSMUST00000118120 2115 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
Nup88Q8CEC0 Atp6v1g2-203ENSMUST00000130992 524 ntTSL 2 BASIC18.57■□□□□ 0.56
Retrieved 100 of 76,532 protein–RNA pairs in 44.4 ms